RNA–Protein interactions for RNA: ENST00000543794.5

LPCAT3-211, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 2

Gene LPCAT3, Length 1,099 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-211ENST00000543794 NISCHQ9Y2I1 1504 aa50.46■■■■■ 5.67
LPCAT3-211ENST00000543794 ABCC9O60706 1549 aa45.72■■■■■ 4.91
LPCAT3-211ENST00000543794 CCDC180Q9P1Z9 1646 aa45.3■■■■■ 4.84
LPCAT3-211ENST00000543794 RB1CC1Q8TDY2 1594 aa43.33■■■■■ 4.53
LPCAT3-211ENST00000543794 DNAJC5BQ9UF47 199 aa43.3■■■■■ 4.52
LPCAT3-211ENST00000543794 NACADO15069 1562 aa43■■■■■ 4.47
LPCAT3-211ENST00000543794 DCAF8L2P0C7V8 631 aa42.8■■■■■ 4.44
LPCAT3-211ENST00000543794 PABPN1Q86U42 306 aaKnown RBP eCLIP42.6■■■■■ 4.41
LPCAT3-211ENST00000543794 MYO15BQ96JP2 1530 aa42.35■■■■■ 4.37
LPCAT3-211ENST00000543794 UNC13AQ9UPW8 1703 aa42.23■■■■■ 4.35
LPCAT3-211ENST00000543794 BICRAQ9NZM4 1560 aa42.1■■■■■ 4.33
LPCAT3-211ENST00000543794 ZCCHC6Q5VYS8 1495 aaKnown RBP41.73■■■■■ 4.27
LPCAT3-211ENST00000543794 DCAF1Q9Y4B6 1507 aa41.67■■■■■ 4.26
LPCAT3-211ENST00000543794 SHROOM4Q9ULL8 1493 aa41.53■■■■■ 4.24
LPCAT3-211ENST00000543794 SCRIBQ14160 1630 aa41.27■■■■■ 4.2
LPCAT3-211ENST00000543794 CC2D2AQ9P2K1 1620 aa41.24■■■■■ 4.19
LPCAT3-211ENST00000543794 CECR2Q9BXF3 1484 aa41.23■■■■■ 4.19
LPCAT3-211ENST00000543794 EIF4G1Q04637 1599 aaKnown RBP41.09■■■■■ 4.17
LPCAT3-211ENST00000543794 DNAJC5Q9H3Z4 198 aa39.99■■■■□ 3.99
LPCAT3-211ENST00000543794 NCAPD3P42695 1498 aa39.78■■■■□ 3.96
LPCAT3-211ENST00000543794 ATAD2BQ9ULI0 1458 aa39.58■■■■□ 3.93
LPCAT3-211ENST00000543794 CUX2O14529 1486 aa39.55■■■■□ 3.92
LPCAT3-211ENST00000543794 ERCC6Q03468 1493 aa39.48■■■■□ 3.91
LPCAT3-211ENST00000543794 SMARCA2P51531 1590 aa39.39■■■■□ 3.9
LPCAT3-211ENST00000543794 SMARCA4P51532 1647 aa39.36■■■■□ 3.89
LPCAT3-211ENST00000543794 HMGXB3Q12766 1538 aa39.35■■■■□ 3.89
LPCAT3-211ENST00000543794 NESP48681 1621 aa39.18■■■■□ 3.86
LPCAT3-211ENST00000543794 BAZ1AQ9NRL2 1556 aaPredicted RBP39.16■■■■□ 3.86
LPCAT3-211ENST00000543794 BAZ1BQ9UIG0 1483 aaKnown RBP39.13■■■■□ 3.85
LPCAT3-211ENST00000543794 PEG3Q9GZU2 1588 aa39.03■■■■□ 3.84
LPCAT3-211ENST00000543794 MROH2BQ7Z745 1585 aa38.87■■■■□ 3.81
LPCAT3-211ENST00000543794 LAMC3Q9Y6N6 1575 aa38.82■■■■□ 3.81
LPCAT3-211ENST00000543794 THOC2Q8NI27 1593 aaKnown RBP38.77■■■■□ 3.8
LPCAT3-211ENST00000543794 PDS5BQ9NTI5 1447 aa38.7■■■■□ 3.79
LPCAT3-211ENST00000543794 CADPSQ9ULU8 1353 aa38.56■■■■□ 3.76
LPCAT3-211ENST00000543794 KIF21AQ7Z4S6 1674 aa38.54■■■■□ 3.76
LPCAT3-211ENST00000543794 MRC2Q9UBG0 1479 aa38.33■■■■□ 3.73
LPCAT3-211ENST00000543794 WIZO95785 1651 aa38.32■■■■□ 3.72
LPCAT3-211ENST00000543794 WDR62O43379 1518 aa38.22■■■■□ 3.71
LPCAT3-211ENST00000543794 CEP164Q9UPV0 1460 aa38.1■■■■□ 3.69
LPCAT3-211ENST00000543794 FANCD2Q9BXW9 1451 aa38.06■■■■□ 3.68
LPCAT3-211ENST00000543794 TRIM41Q8WV44 630 aa38.04■■■■□ 3.68
LPCAT3-211ENST00000543794 CFTRP13569 1480 aa38.03■■■■□ 3.68
LPCAT3-211ENST00000543794 RSF1Q96T23 1441 aaPredicted RBP38■■■■□ 3.67
LPCAT3-211ENST00000543794 TOP2AP11388 1531 aaKnown RBP37.85■■■■□ 3.65
LPCAT3-211ENST00000543794 OSCARQ8IYS5 282 aa37.78■■■■□ 3.64
LPCAT3-211ENST00000543794 URB2Q14146 1524 aaKnown RBP37.76■■■■□ 3.63
LPCAT3-211ENST00000543794 CCDC88BA6NC98 1476 aa37.49■■■■□ 3.59
LPCAT3-211ENST00000543794 IFT140Q96RY7 1462 aa37.39■■■■□ 3.58
LPCAT3-211ENST00000543794 PRDM2Q13029 1718 aa37.38■■■■□ 3.57
LPCAT3-211ENST00000543794 ZNF608Q9ULD9 1512 aaPredicted RBP37.36■■■■□ 3.57
LPCAT3-211ENST00000543794 TOPBP1Q92547 1522 aa37.3■■■■□ 3.56
LPCAT3-211ENST00000543794 ABCC8Q09428 1581 aa37.22■■■■□ 3.55
LPCAT3-211ENST00000543794 RIMBP3CA6NJZ7 1639 aa37.16■■■■□ 3.54
LPCAT3-211ENST00000543794 RIMBP3BA6NNM3 1639 aa37.16■■■■□ 3.54
LPCAT3-211ENST00000543794 RIMBP3Q9UFD9 1639 aa37.16■■■■□ 3.54
LPCAT3-211ENST00000543794 DNMBPQ6XZF7 1577 aa37.08■■■■□ 3.53
LPCAT3-211ENST00000543794 ARHGEF11O15085 1522 aa37.05■■■■□ 3.52
LPCAT3-211ENST00000543794 EIF4G3O43432 1585 aaKnown RBP37.03■■■■□ 3.52
LPCAT3-211ENST00000543794 AQRO60306 1485 aaKnown RBP eCLIP37.01■■■■□ 3.513e-6■■■■□ 23.3
LPCAT3-211ENST00000543794 TARBP1Q13395 1621 aaKnown RBP36.95■■■■□ 3.51
LPCAT3-211ENST00000543794 CYB5RLQ6IPT4 315 aa36.91■■■■□ 3.5
LPCAT3-211ENST00000543794 POLA1P09884 1462 aaPredicted RBP36.9■■■■□ 3.5
LPCAT3-211ENST00000543794 FBLN2P98095 1184 aa36.84■■■■□ 3.49
LPCAT3-211ENST00000543794 RAD54L2Q9Y4B4 1467 aa36.79■■■■□ 3.48
LPCAT3-211ENST00000543794 SOGA1O94964 1423 aa36.77■■■■□ 3.48
LPCAT3-211ENST00000543794 CHD1O14646 1710 aa36.76■■■■□ 3.48
LPCAT3-211ENST00000543794 TDRD9Q8NDG6 1382 aaKnown RBP36.75■■■■□ 3.47
LPCAT3-211ENST00000543794 ARAP1Q96P48 1450 aa36.69■■■■□ 3.46
LPCAT3-211ENST00000543794 FGD5Q6ZNL6 1462 aa36.61■■■■□ 3.45
LPCAT3-211ENST00000543794 TRHP20396 242 aaPredicted RBP36.57■■■■□ 3.44
LPCAT3-211ENST00000543794 SNAPC4Q5SXM2 1469 aa36.56■■■■□ 3.44
LPCAT3-211ENST00000543794 CHMP7Q8WUX9 453 aaPredicted RBP36.55■■■■□ 3.44
LPCAT3-211ENST00000543794 WDR97A6NE52 1622 aa36.54■■■■□ 3.44
LPCAT3-211ENST00000543794 CUX1P39880 1505 aa36.52■■■■□ 3.44
LPCAT3-211ENST00000543794 MAGI1Q96QZ7 1491 aaPredicted RBP36.48■■■■□ 3.43
LPCAT3-211ENST00000543794 GRIN2BQ13224 1484 aa36.46■■■■□ 3.43
LPCAT3-211ENST00000543794 CLASP1Q7Z460 1538 aa36.44■■■■□ 3.42
LPCAT3-211ENST00000543794 SYNJ1O43426 1573 aa36.38■■■■□ 3.41
LPCAT3-211ENST00000543794 SYNJ2O15056 1496 aa36.37■■■■□ 3.41
LPCAT3-211ENST00000543794 GAPVD1Q14C86 1478 aa36.29■■■■□ 3.4
LPCAT3-211ENST00000543794 ABCA10Q8WWZ4 1543 aa36.2■■■■□ 3.39
LPCAT3-211ENST00000543794 PBRM1Q86U86 1689 aa36.13■■■■□ 3.37
LPCAT3-211ENST00000543794 SUPT5HO00267 1087 aaKnown RBP36.1■■■■□ 3.37
LPCAT3-211ENST00000543794 ABCA5Q8WWZ7 1642 aa36.09■■■■□ 3.37
LPCAT3-211ENST00000543794 WRNQ14191 1432 aaPredicted RBP eCLIP36.02■■■■□ 3.36
LPCAT3-211ENST00000543794 GRIN2AQ12879 1464 aa35.97■■■■□ 3.35
LPCAT3-211ENST00000543794 NUP160Q12769 1436 aa35.9■■■■□ 3.34
LPCAT3-211ENST00000543794 ERCC6L2Q5T890 1561 aa35.85■■■■□ 3.33
LPCAT3-211ENST00000543794 ADAMTS12P58397 1594 aa35.84■■■■□ 3.33
LPCAT3-211ENST00000543794 FHAD1B1AJZ9 1412 aa35.83■■■■□ 3.33
LPCAT3-211ENST00000543794 TOP2BQ02880 1626 aa35.83■■■■□ 3.33
LPCAT3-211ENST00000543794 CEP170Q5SW79 1584 aa35.81■■■■□ 3.32
LPCAT3-211ENST00000543794 BIVM-ERCC5R4GMW8 1640 aa35.79■■■■□ 3.32
LPCAT3-211ENST00000543794 AEBP2Q6ZN18 517 aaPredicted RBP35.73■■■■□ 3.31
LPCAT3-211ENST00000543794 ERICH3Q5RHP9 1530 aa35.72■■■■□ 3.31
LPCAT3-211ENST00000543794 SHROOM2Q13796 1616 aa35.68■■■■□ 3.3
LPCAT3-211ENST00000543794 JPH4Q96JJ6 628 aa35.61■■■■□ 3.29
LPCAT3-211ENST00000543794 PRG4Q92954 1404 aaPredicted RBP35.57■■■■□ 3.29
LPCAT3-211ENST00000543794 RUSC2Q8N2Y8 1516 aa35.33■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms