RNA–Protein interactions for RNA: ENST00000543537.5

COPS7A-217, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 5

Gene COPS7A, Length 802 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-217ENST00000543537 NISCHQ9Y2I1 1504 aa27.71■■■□□ 2.03
COPS7A-217ENST00000543537 CCDC180Q9P1Z9 1646 aa24.77■■□□□ 1.56
COPS7A-217ENST00000543537 ABCC9O60706 1549 aa24.42■■□□□ 1.5
COPS7A-217ENST00000543537 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
COPS7A-217ENST00000543537 NACADO15069 1562 aa23.38■■□□□ 1.33
COPS7A-217ENST00000543537 MYO15BQ96JP2 1530 aa23.23■■□□□ 1.31
COPS7A-217ENST00000543537 DCAF8L2P0C7V8 631 aa23.08■■□□□ 1.29
COPS7A-217ENST00000543537 ZCCHC6Q5VYS8 1495 aaKnown RBP23.04■■□□□ 1.28
COPS7A-217ENST00000543537 DCAF1Q9Y4B6 1507 aa23■■□□□ 1.27
COPS7A-217ENST00000543537 UNC13AQ9UPW8 1703 aa22.84■■□□□ 1.25
COPS7A-217ENST00000543537 PABPN1Q86U42 306 aaKnown RBP eCLIP22.76■■□□□ 1.23
COPS7A-217ENST00000543537 BICRAQ9NZM4 1560 aa22.76■■□□□ 1.23
COPS7A-217ENST00000543537 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
COPS7A-217ENST00000543537 SHROOM4Q9ULL8 1493 aa22.59■■□□□ 1.21
COPS7A-217ENST00000543537 SCRIBQ14160 1630 aa22.46■■□□□ 1.19
COPS7A-217ENST00000543537 EIF4G1Q04637 1599 aaKnown RBP22.16■■□□□ 1.14
COPS7A-217ENST00000543537 CC2D2AQ9P2K1 1620 aa22.12■■□□□ 1.13
COPS7A-217ENST00000543537 CECR2Q9BXF3 1484 aa22.03■■□□□ 1.12
COPS7A-217ENST00000543537 NCAPD3P42695 1498 aa21.6■■□□□ 1.05
COPS7A-217ENST00000543537 SMARCA4P51532 1647 aa21.53■■□□□ 1.04
COPS7A-217ENST00000543537 ATAD2BQ9ULI0 1458 aa21.52■■□□□ 1.04
COPS7A-217ENST00000543537 SMARCA2P51531 1590 aa21.48■■□□□ 1.03
COPS7A-217ENST00000543537 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
COPS7A-217ENST00000543537 HMGXB3Q12766 1538 aa21.45■■□□□ 1.02
COPS7A-217ENST00000543537 PEG3Q9GZU2 1588 aa21.42■■□□□ 1.02
COPS7A-217ENST00000543537 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
COPS7A-217ENST00000543537 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
COPS7A-217ENST00000543537 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
COPS7A-217ENST00000543537 CUX2O14529 1486 aa21.07■□□□□ 0.96
COPS7A-217ENST00000543537 NESP48681 1621 aa21.06■□□□□ 0.96
COPS7A-217ENST00000543537 LAMC3Q9Y6N6 1575 aa21.04■□□□□ 0.96
COPS7A-217ENST00000543537 WIZO95785 1651 aa21.02■□□□□ 0.95
COPS7A-217ENST00000543537 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
COPS7A-217ENST00000543537 CADPSQ9ULU8 1353 aa20.92■□□□□ 0.94
COPS7A-217ENST00000543537 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
COPS7A-217ENST00000543537 THOC2Q8NI27 1593 aaKnown RBP20.85■□□□□ 0.93
COPS7A-217ENST00000543537 TOP2AP11388 1531 aaKnown RBP20.84■□□□□ 0.93
COPS7A-217ENST00000543537 KIF21AQ7Z4S6 1674 aa20.78■□□□□ 0.92
COPS7A-217ENST00000543537 DNAJC5Q9H3Z4 198 aa20.76■□□□□ 0.91
COPS7A-217ENST00000543537 CFTRP13569 1480 aa20.75■□□□□ 0.91
COPS7A-217ENST00000543537 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
COPS7A-217ENST00000543537 WDR62O43379 1518 aa20.65■□□□□ 0.9
COPS7A-217ENST00000543537 FANCD2Q9BXW9 1451 aa20.64■□□□□ 0.89
COPS7A-217ENST00000543537 CEP164Q9UPV0 1460 aa20.64■□□□□ 0.89
COPS7A-217ENST00000543537 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.89
COPS7A-217ENST00000543537 PRDM2Q13029 1718 aa20.49■□□□□ 0.87
COPS7A-217ENST00000543537 URB2Q14146 1524 aaKnown RBP20.46■□□□□ 0.87
COPS7A-217ENST00000543537 ABCC8Q09428 1581 aa20.31■□□□□ 0.84
COPS7A-217ENST00000543537 TOPBP1Q92547 1522 aa20.28■□□□□ 0.84
COPS7A-217ENST00000543537 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
COPS7A-217ENST00000543537 DNMBPQ6XZF7 1577 aa20.24■□□□□ 0.83
COPS7A-217ENST00000543537 ZNF608Q9ULD9 1512 aaPredicted RBP20.14■□□□□ 0.81
COPS7A-217ENST00000543537 POLA1P09884 1462 aaPredicted RBP20.1■□□□□ 0.81
COPS7A-217ENST00000543537 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
COPS7A-217ENST00000543537 OSCARQ8IYS5 282 aa20.09■□□□□ 0.81
COPS7A-217ENST00000543537 SUPT5HO00267 1087 aaKnown RBP20.07■□□□□ 0.8
COPS7A-217ENST00000543537 EIF4G3O43432 1585 aaKnown RBP20.04■□□□□ 0.8
COPS7A-217ENST00000543537 CUX1P39880 1505 aa20.02■□□□□ 0.79
COPS7A-217ENST00000543537 SOGA1O94964 1423 aa20■□□□□ 0.79
COPS7A-217ENST00000543537 WDR97A6NE52 1622 aa19.98■□□□□ 0.79
COPS7A-217ENST00000543537 AQRO60306 1485 aaKnown RBP eCLIP19.98■□□□□ 0.79
COPS7A-217ENST00000543537 FGD5Q6ZNL6 1462 aa19.98■□□□□ 0.79
COPS7A-217ENST00000543537 RAD54L2Q9Y4B4 1467 aa19.97■□□□□ 0.79
COPS7A-217ENST00000543537 TDRD9Q8NDG6 1382 aaKnown RBP19.89■□□□□ 0.77
COPS7A-217ENST00000543537 ABCA10Q8WWZ4 1543 aa19.82■□□□□ 0.76
COPS7A-217ENST00000543537 GRIN2BQ13224 1484 aa19.82■□□□□ 0.76
COPS7A-217ENST00000543537 MAGI1Q96QZ7 1491 aaPredicted RBP19.82■□□□□ 0.76
COPS7A-217ENST00000543537 CHD1O14646 1710 aa19.8■□□□□ 0.76
COPS7A-217ENST00000543537 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
COPS7A-217ENST00000543537 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
COPS7A-217ENST00000543537 WRNQ14191 1432 aaPredicted RBP eCLIP19.77■□□□□ 0.76
COPS7A-217ENST00000543537 TOP2BQ02880 1626 aa19.77■□□□□ 0.76
COPS7A-217ENST00000543537 ARHGEF11O15085 1522 aa19.76■□□□□ 0.75
COPS7A-217ENST00000543537 RIMBP3CA6NJZ7 1639 aa19.76■□□□□ 0.75
COPS7A-217ENST00000543537 RIMBP3BA6NNM3 1639 aa19.76■□□□□ 0.75
COPS7A-217ENST00000543537 RIMBP3Q9UFD9 1639 aa19.76■□□□□ 0.75
COPS7A-217ENST00000543537 BIVM-ERCC5R4GMW8 1640 aa19.76■□□□□ 0.75
COPS7A-217ENST00000543537 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
COPS7A-217ENST00000543537 ABCA5Q8WWZ7 1642 aa19.74■□□□□ 0.75
COPS7A-217ENST00000543537 SYNJ2O15056 1496 aa19.73■□□□□ 0.75
COPS7A-217ENST00000543537 SYNJ1O43426 1573 aa19.71■□□□□ 0.75
COPS7A-217ENST00000543537 FBLN2P98095 1184 aa19.71■□□□□ 0.75
COPS7A-217ENST00000543537 CHMP7Q8WUX9 453 aaPredicted RBP19.69■□□□□ 0.74
COPS7A-217ENST00000543537 PBRM1Q86U86 1689 aa19.68■□□□□ 0.74
COPS7A-217ENST00000543537 CLASP1Q7Z460 1538 aa19.68■□□□□ 0.74
COPS7A-217ENST00000543537 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
COPS7A-217ENST00000543537 ERICH3Q5RHP9 1530 aa19.58■□□□□ 0.73
COPS7A-217ENST00000543537 ADAMTS12P58397 1594 aa19.56■□□□□ 0.72
COPS7A-217ENST00000543537 GRIN2AQ12879 1464 aa19.55■□□□□ 0.72
COPS7A-217ENST00000543537 FHAD1B1AJZ9 1412 aa19.55■□□□□ 0.72
COPS7A-217ENST00000543537 CYB5RLQ6IPT4 315 aa19.55■□□□□ 0.72
COPS7A-217ENST00000543537 NUP160Q12769 1436 aa19.53■□□□□ 0.72
COPS7A-217ENST00000543537 CEP170Q5SW79 1584 aa19.44■□□□□ 0.7
COPS7A-217ENST00000543537 SHROOM2Q13796 1616 aa19.4■□□□□ 0.7
COPS7A-217ENST00000543537 KIF27Q86VH2 1401 aa19.39■□□□□ 0.69
COPS7A-217ENST00000543537 IGF1RP08069 1367 aa19.38■□□□□ 0.69
COPS7A-217ENST00000543537 ERCC6L2Q5T890 1561 aa19.32■□□□□ 0.68
COPS7A-217ENST00000543537 CUL7Q14999 1698 aa19.3■□□□□ 0.68
COPS7A-217ENST00000543537 JPH4Q96JJ6 628 aa19.28■□□□□ 0.68
COPS7A-217ENST00000543537 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms