RNA–Protein interactions for RNA: ENST00000543093.1

CSF1R-209, Transcript of colony stimulating factor 1 receptor, humanhuman

TSL 1 (best) BASIC

Gene CSF1R, Length 921 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSF1R-209ENST00000543093 NISCHQ9Y2I1 1504 aa38.97■■■■□ 3.83
CSF1R-209ENST00000543093 ABCC9O60706 1549 aa35.1■■■■□ 3.21
CSF1R-209ENST00000543093 CCDC180Q9P1Z9 1646 aa35.04■■■■□ 3.2
CSF1R-209ENST00000543093 RB1CC1Q8TDY2 1594 aa33.38■■■□□ 2.93
CSF1R-209ENST00000543093 NACADO15069 1562 aa33.11■■■□□ 2.89
CSF1R-209ENST00000543093 DNAJC5BQ9UF47 199 aa32.96■■■□□ 2.87
CSF1R-209ENST00000543093 DCAF8L2P0C7V8 631 aa32.93■■■□□ 2.86
CSF1R-209ENST00000543093 UNC13AQ9UPW8 1703 aa32.68■■■□□ 2.82
CSF1R-209ENST00000543093 PABPN1Q86U42 306 aaKnown RBP eCLIP32.64■■■□□ 2.82
CSF1R-209ENST00000543093 MYO15BQ96JP2 1530 aa32.6■■■□□ 2.81
CSF1R-209ENST00000543093 BICRAQ9NZM4 1560 aa32.41■■■□□ 2.78
CSF1R-209ENST00000543093 ZCCHC6Q5VYS8 1495 aaKnown RBP32.29■■■□□ 2.76
CSF1R-209ENST00000543093 DCAF1Q9Y4B6 1507 aa32.17■■■□□ 2.74
CSF1R-209ENST00000543093 SCRIBQ14160 1630 aa31.93■■■□□ 2.7
CSF1R-209ENST00000543093 SHROOM4Q9ULL8 1493 aa31.92■■■□□ 2.7
CSF1R-209ENST00000543093 CC2D2AQ9P2K1 1620 aa31.71■■■□□ 2.67
CSF1R-209ENST00000543093 EIF4G1Q04637 1599 aaKnown RBP31.61■■■□□ 2.65
CSF1R-209ENST00000543093 CECR2Q9BXF3 1484 aa31.61■■■□□ 2.65
CSF1R-209ENST00000543093 NCAPD3P42695 1498 aa30.55■■■□□ 2.48
CSF1R-209ENST00000543093 ATAD2BQ9ULI0 1458 aa30.45■■■□□ 2.47
CSF1R-209ENST00000543093 SMARCA4P51532 1647 aa30.44■■■□□ 2.46
CSF1R-209ENST00000543093 SMARCA2P51531 1590 aa30.38■■■□□ 2.45
CSF1R-209ENST00000543093 HMGXB3Q12766 1538 aa30.33■■■□□ 2.45
CSF1R-209ENST00000543093 DNAJC5Q9H3Z4 198 aa30.31■■■□□ 2.44
CSF1R-209ENST00000543093 ERCC6Q03468 1493 aa30.31■■■□□ 2.44
CSF1R-209ENST00000543093 BAZ1AQ9NRL2 1556 aaPredicted RBP30.26■■■□□ 2.43
CSF1R-209ENST00000543093 CUX2O14529 1486 aa30.25■■■□□ 2.43
CSF1R-209ENST00000543093 BAZ1BQ9UIG0 1483 aaKnown RBP30.17■■■□□ 2.42
CSF1R-209ENST00000543093 NESP48681 1621 aa30.13■■■□□ 2.41
CSF1R-209ENST00000543093 PEG3Q9GZU2 1588 aa30.12■■■□□ 2.41
CSF1R-209ENST00000543093 MROH2BQ7Z745 1585 aa30.04■■■□□ 2.4
CSF1R-209ENST00000543093 LAMC3Q9Y6N6 1575 aa29.9■■■□□ 2.38
CSF1R-209ENST00000543093 THOC2Q8NI27 1593 aaKnown RBP29.86■■■□□ 2.37
CSF1R-209ENST00000543093 KIF21AQ7Z4S6 1674 aa29.79■■■□□ 2.36
CSF1R-209ENST00000543093 WIZO95785 1651 aa29.71■■■□□ 2.35
CSF1R-209ENST00000543093 PDS5BQ9NTI5 1447 aa29.71■■■□□ 2.35
CSF1R-209ENST00000543093 CADPSQ9ULU8 1353 aa29.61■■■□□ 2.33
CSF1R-209ENST00000543093 MRC2Q9UBG0 1479 aa29.48■■■□□ 2.31
CSF1R-209ENST00000543093 WDR62O43379 1518 aa29.41■■■□□ 2.3
CSF1R-209ENST00000543093 RSF1Q96T23 1441 aaPredicted RBP29.37■■■□□ 2.29
CSF1R-209ENST00000543093 CEP164Q9UPV0 1460 aa29.35■■■□□ 2.29
CSF1R-209ENST00000543093 TOP2AP11388 1531 aaKnown RBP29.3■■■□□ 2.28
CSF1R-209ENST00000543093 FANCD2Q9BXW9 1451 aa29.3■■■□□ 2.28
CSF1R-209ENST00000543093 CFTRP13569 1480 aa29.27■■■□□ 2.28
CSF1R-209ENST00000543093 URB2Q14146 1524 aaKnown RBP29.08■■■□□ 2.25
CSF1R-209ENST00000543093 PRDM2Q13029 1718 aa29.06■■■□□ 2.24
CSF1R-209ENST00000543093 TRIM41Q8WV44 630 aa28.99■■■□□ 2.23
CSF1R-209ENST00000543093 CCDC88BA6NC98 1476 aa28.96■■■□□ 2.23
CSF1R-209ENST00000543093 OSCARQ8IYS5 282 aa28.84■■■□□ 2.21
CSF1R-209ENST00000543093 IFT140Q96RY7 1462 aa28.75■■■□□ 2.19
CSF1R-209ENST00000543093 TOPBP1Q92547 1522 aa28.74■■■□□ 2.19
CSF1R-209ENST00000543093 ZNF608Q9ULD9 1512 aaPredicted RBP28.73■■■□□ 2.19
CSF1R-209ENST00000543093 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
CSF1R-209ENST00000543093 DNMBPQ6XZF7 1577 aa28.64■■■□□ 2.18
CSF1R-209ENST00000543093 EIF4G3O43432 1585 aaKnown RBP28.6■■■□□ 2.17
CSF1R-209ENST00000543093 RIMBP3CA6NJZ7 1639 aa28.54■■■□□ 2.16
CSF1R-209ENST00000543093 RIMBP3BA6NNM3 1639 aa28.54■■■□□ 2.16
CSF1R-209ENST00000543093 RIMBP3Q9UFD9 1639 aa28.54■■■□□ 2.16
CSF1R-209ENST00000543093 TARBP1Q13395 1621 aaKnown RBP28.51■■■□□ 2.15
CSF1R-209ENST00000543093 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.14
CSF1R-209ENST00000543093 POLA1P09884 1462 aaPredicted RBP28.44■■■□□ 2.14
CSF1R-209ENST00000543093 CHD1O14646 1710 aa28.43■■■□□ 2.14
CSF1R-209ENST00000543093 ARHGEF11O15085 1522 aa28.42■■■□□ 2.14
CSF1R-209ENST00000543093 RAD54L2Q9Y4B4 1467 aa28.35■■■□□ 2.13
CSF1R-209ENST00000543093 SOGA1O94964 1423 aa28.3■■■□□ 2.12
CSF1R-209ENST00000543093 FBLN2P98095 1184 aa28.28■■■□□ 2.12
CSF1R-209ENST00000543093 FGD5Q6ZNL6 1462 aa28.27■■■□□ 2.12
CSF1R-209ENST00000543093 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.12
CSF1R-209ENST00000543093 CUX1P39880 1505 aa28.23■■■□□ 2.11
CSF1R-209ENST00000543093 WDR97A6NE52 1622 aa28.2■■■□□ 2.1
CSF1R-209ENST00000543093 CYB5RLQ6IPT4 315 aa28.19■■■□□ 2.1
CSF1R-209ENST00000543093 SNAPC4Q5SXM2 1469 aa28.17■■■□□ 2.1
CSF1R-209ENST00000543093 ARAP1Q96P48 1450 aa28.13■■■□□ 2.09
CSF1R-209ENST00000543093 MAGI1Q96QZ7 1491 aaPredicted RBP28.08■■■□□ 2.09
CSF1R-209ENST00000543093 GRIN2BQ13224 1484 aa28.07■■■□□ 2.08
CSF1R-209ENST00000543093 CLASP1Q7Z460 1538 aa28.05■■■□□ 2.08
CSF1R-209ENST00000543093 CHMP7Q8WUX9 453 aaPredicted RBP28.05■■■□□ 2.08
CSF1R-209ENST00000543093 SYNJ1O43426 1573 aa28.03■■■□□ 2.08
CSF1R-209ENST00000543093 SUPT5HO00267 1087 aaKnown RBP28.03■■■□□ 2.08
CSF1R-209ENST00000543093 PBRM1Q86U86 1689 aa28.03■■■□□ 2.08
CSF1R-209ENST00000543093 SYNJ2O15056 1496 aa27.99■■■□□ 2.07
CSF1R-209ENST00000543093 GAPVD1Q14C86 1478 aa27.96■■■□□ 2.07
CSF1R-209ENST00000543093 TRHP20396 242 aaPredicted RBP27.92■■■□□ 2.06
CSF1R-209ENST00000543093 ABCA5Q8WWZ7 1642 aa27.92■■■□□ 2.06
CSF1R-209ENST00000543093 ABCA10Q8WWZ4 1543 aa27.92■■■□□ 2.06
CSF1R-209ENST00000543093 BIVM-ERCC5R4GMW8 1640 aa27.78■■■□□ 2.04
CSF1R-209ENST00000543093 WRNQ14191 1432 aaPredicted RBP eCLIP27.78■■■□□ 2.04
CSF1R-209ENST00000543093 TOP2BQ02880 1626 aa27.76■■■□□ 2.03
CSF1R-209ENST00000543093 GRIN2AQ12879 1464 aa27.72■■■□□ 2.03
CSF1R-209ENST00000543093 ADAMTS12P58397 1594 aa27.72■■■□□ 2.03
CSF1R-209ENST00000543093 CEP170Q5SW79 1584 aa27.65■■■□□ 2.02
CSF1R-209ENST00000543093 ERCC6L2Q5T890 1561 aa27.62■■■□□ 2.01
CSF1R-209ENST00000543093 NUP160Q12769 1436 aa27.61■■■□□ 2.01
CSF1R-209ENST00000543093 FHAD1B1AJZ9 1412 aa27.59■■■□□ 2.01
CSF1R-209ENST00000543093 ERICH3Q5RHP9 1530 aa27.57■■■□□ 2
CSF1R-209ENST00000543093 SHROOM2Q13796 1616 aa27.54■■■□□ 2
CSF1R-209ENST00000543093 PRG4Q92954 1404 aaPredicted RBP27.36■■□□□ 1.97
CSF1R-209ENST00000543093 RUSC2Q8N2Y8 1516 aa27.33■■□□□ 1.97
CSF1R-209ENST00000543093 JPH4Q96JJ6 628 aa27.31■■□□□ 1.96
CSF1R-209ENST00000543093 KIF13AQ9H1H9 1805 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms