RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, humanhuman

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC2-223ENST00000542552 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
ECHDC2-223ENST00000542552 CCDC180Q9P1Z9 1646 aa33.79■■■■□ 3
ECHDC2-223ENST00000542552 ABCC9O60706 1549 aa33.12■■■□□ 2.89
ECHDC2-223ENST00000542552 RB1CC1Q8TDY2 1594 aa31.83■■■□□ 2.69
ECHDC2-223ENST00000542552 NACADO15069 1562 aa31.79■■■□□ 2.68
ECHDC2-223ENST00000542552 DCAF8L2P0C7V8 631 aa31.62■■■□□ 2.65
ECHDC2-223ENST00000542552 MYO15BQ96JP2 1530 aa31.59■■■□□ 2.65
ECHDC2-223ENST00000542552 ZCCHC6Q5VYS8 1495 aaKnown RBP31.56■■■□□ 2.64
ECHDC2-223ENST00000542552 DCAF1Q9Y4B6 1507 aa31.4■■■□□ 2.62
ECHDC2-223ENST00000542552 UNC13AQ9UPW8 1703 aa31.15■■■□□ 2.58
ECHDC2-223ENST00000542552 BICRAQ9NZM4 1560 aa30.93■■■□□ 2.54
ECHDC2-223ENST00000542552 PABPN1Q86U42 306 aaKnown RBP eCLIP30.92■■■□□ 2.54
ECHDC2-223ENST00000542552 SCRIBQ14160 1630 aa30.76■■■□□ 2.51
ECHDC2-223ENST00000542552 DNAJC5BQ9UF47 199 aa30.58■■■□□ 2.49
ECHDC2-223ENST00000542552 SHROOM4Q9ULL8 1493 aa30.57■■■□□ 2.48
ECHDC2-223ENST00000542552 EIF4G1Q04637 1599 aaKnown RBP30.08■■■□□ 2.41
ECHDC2-223ENST00000542552 CC2D2AQ9P2K1 1620 aa29.99■■■□□ 2.39
ECHDC2-223ENST00000542552 CECR2Q9BXF3 1484 aa29.8■■■□□ 2.36
ECHDC2-223ENST00000542552 SMARCA4P51532 1647 aa29.45■■■□□ 2.3
ECHDC2-223ENST00000542552 BAZ1AQ9NRL2 1556 aaPredicted RBP29.39■■■□□ 2.29
ECHDC2-223ENST00000542552 NCAPD3P42695 1498 aa29.35■■■□□ 2.29
ECHDC2-223ENST00000542552 ATAD2BQ9ULI0 1458 aa29.32■■■□□ 2.28
ECHDC2-223ENST00000542552 SMARCA2P51531 1590 aa29.27■■■□□ 2.28
ECHDC2-223ENST00000542552 MROH2BQ7Z745 1585 aa29.22■■■□□ 2.27
ECHDC2-223ENST00000542552 PEG3Q9GZU2 1588 aa29.2■■■□□ 2.26
ECHDC2-223ENST00000542552 HMGXB3Q12766 1538 aa29.18■■■□□ 2.26
ECHDC2-223ENST00000542552 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
ECHDC2-223ENST00000542552 WIZO95785 1651 aa28.89■■■□□ 2.21
ECHDC2-223ENST00000542552 RSF1Q96T23 1441 aaPredicted RBP28.84■■■□□ 2.21
ECHDC2-223ENST00000542552 NESP48681 1621 aa28.65■■■□□ 2.18
ECHDC2-223ENST00000542552 TOP2AP11388 1531 aaKnown RBP28.57■■■□□ 2.16
ECHDC2-223ENST00000542552 LAMC3Q9Y6N6 1575 aa28.57■■■□□ 2.16
ECHDC2-223ENST00000542552 ERCC6Q03468 1493 aa28.53■■■□□ 2.16
ECHDC2-223ENST00000542552 CADPSQ9ULU8 1353 aa28.46■■■□□ 2.15
ECHDC2-223ENST00000542552 PDS5BQ9NTI5 1447 aa28.36■■■□□ 2.13
ECHDC2-223ENST00000542552 CUX2O14529 1486 aa28.34■■■□□ 2.13
ECHDC2-223ENST00000542552 KIF21AQ7Z4S6 1674 aa28.32■■■□□ 2.12
ECHDC2-223ENST00000542552 CFTRP13569 1480 aa28.27■■■□□ 2.12
ECHDC2-223ENST00000542552 THOC2Q8NI27 1593 aaKnown RBP28.27■■■□□ 2.12
ECHDC2-223ENST00000542552 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
ECHDC2-223ENST00000542552 FANCD2Q9BXW9 1451 aa28.11■■■□□ 2.09
ECHDC2-223ENST00000542552 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
ECHDC2-223ENST00000542552 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
ECHDC2-223ENST00000542552 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
ECHDC2-223ENST00000542552 WDR62O43379 1518 aa28.02■■■□□ 2.08
ECHDC2-223ENST00000542552 SUPT5HO00267 1087 aaKnown RBP27.91■■■□□ 2.06
ECHDC2-223ENST00000542552 URB2Q14146 1524 aaKnown RBP27.87■■■□□ 2.05
ECHDC2-223ENST00000542552 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
ECHDC2-223ENST00000542552 ABCC8Q09428 1581 aa27.66■■■□□ 2.02
ECHDC2-223ENST00000542552 DNAJC5Q9H3Z4 198 aa27.64■■■□□ 2.02
ECHDC2-223ENST00000542552 DNMBPQ6XZF7 1577 aa27.62■■■□□ 2.01
ECHDC2-223ENST00000542552 IFT140Q96RY7 1462 aa27.51■■■□□ 2
ECHDC2-223ENST00000542552 POLA1P09884 1462 aaPredicted RBP27.43■■□□□ 1.98
ECHDC2-223ENST00000542552 CUX1P39880 1505 aa27.41■■□□□ 1.98
ECHDC2-223ENST00000542552 ZNF608Q9ULD9 1512 aaPredicted RBP27.41■■□□□ 1.98
ECHDC2-223ENST00000542552 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
ECHDC2-223ENST00000542552 FGD5Q6ZNL6 1462 aa27.32■■□□□ 1.96
ECHDC2-223ENST00000542552 SOGA1O94964 1423 aa27.29■■□□□ 1.96
ECHDC2-223ENST00000542552 RAD54L2Q9Y4B4 1467 aa27.29■■□□□ 1.96
ECHDC2-223ENST00000542552 EIF4G3O43432 1585 aaKnown RBP27.29■■□□□ 1.96
ECHDC2-223ENST00000542552 AQRO60306 1485 aaKnown RBP eCLIP27.23■■□□□ 1.95
ECHDC2-223ENST00000542552 WDR97A6NE52 1622 aa27.17■■□□□ 1.94
ECHDC2-223ENST00000542552 WRNQ14191 1432 aaPredicted RBP eCLIP27.16■■□□□ 1.94
ECHDC2-223ENST00000542552 BIVM-ERCC5R4GMW8 1640 aa27.16■■□□□ 1.94
ECHDC2-223ENST00000542552 TDRD9Q8NDG6 1382 aaKnown RBP27.15■■□□□ 1.94
ECHDC2-223ENST00000542552 TOP2BQ02880 1626 aa27.15■■□□□ 1.94
ECHDC2-223ENST00000542552 SYNJ1O43426 1573 aa27.13■■□□□ 1.93
ECHDC2-223ENST00000542552 OSCARQ8IYS5 282 aa27.12■■□□□ 1.93
ECHDC2-223ENST00000542552 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
ECHDC2-223ENST00000542552 GRIN2BQ13224 1484 aa27■■□□□ 1.91
ECHDC2-223ENST00000542552 ABCA5Q8WWZ7 1642 aa26.98■■□□□ 1.91
ECHDC2-223ENST00000542552 CHD1O14646 1710 aa26.98■■□□□ 1.91
ECHDC2-223ENST00000542552 GAPVD1Q14C86 1478 aa26.98■■□□□ 1.91
ECHDC2-223ENST00000542552 SNAPC4Q5SXM2 1469 aa26.96■■□□□ 1.91
ECHDC2-223ENST00000542552 MAGI1Q96QZ7 1491 aaPredicted RBP26.94■■□□□ 1.9
ECHDC2-223ENST00000542552 PBRM1Q86U86 1689 aa26.94■■□□□ 1.9
ECHDC2-223ENST00000542552 FBLN2P98095 1184 aa26.86■■□□□ 1.89
ECHDC2-223ENST00000542552 SYNJ2O15056 1496 aa26.84■■□□□ 1.89
ECHDC2-223ENST00000542552 CHMP7Q8WUX9 453 aaPredicted RBP26.8■■□□□ 1.88
ECHDC2-223ENST00000542552 ERICH3Q5RHP9 1530 aa26.75■■□□□ 1.87
ECHDC2-223ENST00000542552 RIMBP3CA6NJZ7 1639 aa26.72■■□□□ 1.87
ECHDC2-223ENST00000542552 RIMBP3BA6NNM3 1639 aa26.72■■□□□ 1.87
ECHDC2-223ENST00000542552 RIMBP3Q9UFD9 1639 aa26.72■■□□□ 1.87
ECHDC2-223ENST00000542552 ADAMTS12P58397 1594 aa26.71■■□□□ 1.87
ECHDC2-223ENST00000542552 CLASP1Q7Z460 1538 aa26.7■■□□□ 1.87
ECHDC2-223ENST00000542552 ARHGEF11O15085 1522 aa26.7■■□□□ 1.86
ECHDC2-223ENST00000542552 FHAD1B1AJZ9 1412 aa26.66■■□□□ 1.86
ECHDC2-223ENST00000542552 GRIN2AQ12879 1464 aa26.65■■□□□ 1.86
ECHDC2-223ENST00000542552 KIF27Q86VH2 1401 aa26.6■■□□□ 1.85
ECHDC2-223ENST00000542552 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
ECHDC2-223ENST00000542552 IGF1RP08069 1367 aa26.56■■□□□ 1.84
ECHDC2-223ENST00000542552 NUP160Q12769 1436 aa26.56■■□□□ 1.84
ECHDC2-223ENST00000542552 CEP170Q5SW79 1584 aa26.53■■□□□ 1.84
ECHDC2-223ENST00000542552 ARAP1Q96P48 1450 aa26.48■■□□□ 1.83
ECHDC2-223ENST00000542552 CUL7Q14999 1698 aa26.47■■□□□ 1.83
ECHDC2-223ENST00000542552 CYB5RLQ6IPT4 315 aa26.42■■□□□ 1.82
ECHDC2-223ENST00000542552 SHROOM2Q13796 1616 aa26.39■■□□□ 1.81
ECHDC2-223ENST00000542552 CARMIL1Q5VZK9 1371 aa26.35■■□□□ 1.81
ECHDC2-223ENST00000542552 RUSC2Q8N2Y8 1516 aa26.34■■□□□ 1.81
ECHDC2-223ENST00000542552 ERCC6L2Q5T890 1561 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms