RNA–Protein interactions for RNA: ENST00000542495.5

ATPAF1-212, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-212ENST00000542495 AEBP2Q6ZN18 517 aaPredicted RBP13.86□□□□□ -0.19
ATPAF1-212ENST00000542495 CHIC1Q5VXU3 224 aa12.79□□□□□ -0.36
ATPAF1-212ENST00000542495 SENP3Q9H4L4 574 aaPredicted RBP11.79□□□□□ -0.52
ATPAF1-212ENST00000542495 PHF23Q9BUL5 403 aaPredicted RBP11.59□□□□□ -0.55
ATPAF1-212ENST00000542495 POTEDQ86YR6 584 aa11.4□□□□□ -0.58
ATPAF1-212ENST00000542495 FOXD1Q16676 465 aa11.13□□□□□ -0.63
ATPAF1-212ENST00000542495 NISCHQ9Y2I1 1504 aa10.85□□□□□ -0.67
ATPAF1-212ENST00000542495 MSH5O43196 834 aa10.55□□□□□ -0.72
ATPAF1-212ENST00000542495 PIAS4Q8N2W9 510 aaPredicted RBP10.21□□□□□ -0.78
ATPAF1-212ENST00000542495 PLPPR3Q6T4P5 718 aa10.15□□□□□ -0.78
ATPAF1-212ENST00000542495 PPP6R1Q9UPN7 881 aa10□□□□□ -0.81
ATPAF1-212ENST00000542495 ADRA2BP18089 450 aa9.9□□□□□ -0.82
ATPAF1-212ENST00000542495 KCNA4P22459 653 aa9.46□□□□□ -0.9
ATPAF1-212ENST00000542495 EHMT2Q96KQ7 1210 aa9.45□□□□□ -0.9
ATPAF1-212ENST00000542495 CACNB1Q02641 598 aaPredicted RBP9.43□□□□□ -0.9
ATPAF1-212ENST00000542495 MAPK8IP2Q13387 824 aaPredicted RBP9.3□□□□□ -0.92
ATPAF1-212ENST00000542495 DMRT2Q9Y5R5 561 aa9.29□□□□□ -0.92
ATPAF1-212ENST00000542495 CCDC180Q9P1Z9 1646 aa9.27□□□□□ -0.93
ATPAF1-212ENST00000542495 ZCCHC6Q5VYS8 1495 aaKnown RBP9.2□□□□□ -0.94
ATPAF1-212ENST00000542495 ABCC9O60706 1549 aa9.18□□□□□ -0.94
ATPAF1-212ENST00000542495 CSRNP3Q8WYN3 585 aa9.11□□□□□ -0.95
ATPAF1-212ENST00000542495 SHROOM4Q9ULL8 1493 aa9.1□□□□□ -0.95
ATPAF1-212ENST00000542495 SLC4A1APQ9BWU0 796 aaKnown RBP9.07□□□□□ -0.96
ATPAF1-212ENST00000542495 PPP4R3CPQ6ZMV5 832 aa9.03□□□□□ -0.96
ATPAF1-212ENST00000542495 RNF39Q9H2S5 420 aa9.01□□□□□ -0.97
ATPAF1-212ENST00000542495 DCAF1Q9Y4B6 1507 aa8.98□□□□□ -0.97
ATPAF1-212ENST00000542495 SUPT5HO00267 1087 aaKnown RBP8.93□□□□□ -0.98
ATPAF1-212ENST00000542495 SCAF1Q9H7N4 1312 aaKnown RBP8.92□□□□□ -0.98
ATPAF1-212ENST00000542495 NCBP3Q53F19 620 aaKnown RBP8.9□□□□□ -0.98
ATPAF1-212ENST00000542495 DCAF8L1A6NGE4 600 aa8.89□□□□□ -0.99
ATPAF1-212ENST00000542495 NPM3O75607 178 aaKnown RBP8.84□□□□□ -1
ATPAF1-212ENST00000542495 C1QBPQ07021 282 aaKnown RBP8.79□□□□□ -1
ATPAF1-212ENST00000542495 DCAF8L2P0C7V8 631 aa8.78□□□□□ -1
ATPAF1-212ENST00000542495 POTEHQ6S545 545 aa8.78□□□□□ -1
ATPAF1-212ENST00000542495 MYO15BQ96JP2 1530 aa8.75□□□□□ -1.01
ATPAF1-212ENST00000542495 ZBTB22O15209 634 aa8.75□□□□□ -1.01
ATPAF1-212ENST00000542495 RB1CC1Q8TDY2 1594 aa8.73□□□□□ -1.01
ATPAF1-212ENST00000542495 HOXD11P31277 338 aaPredicted RBP8.73□□□□□ -1.01
ATPAF1-212ENST00000542495 NACADO15069 1562 aa8.66□□□□□ -1.02
ATPAF1-212ENST00000542495 DNAJC5BQ9UF47 199 aa8.66□□□□□ -1.02
ATPAF1-212ENST00000542495 CNKSR2Q8WXI2 1034 aa8.64□□□□□ -1.03
ATPAF1-212ENST00000542495 SCRIBQ14160 1630 aa8.58□□□□□ -1.04
ATPAF1-212ENST00000542495 RSF1Q96T23 1441 aaPredicted RBP8.57□□□□□ -1.04
ATPAF1-212ENST00000542495 HRCP23327 699 aa8.53□□□□□ -1.04
ATPAF1-212ENST00000542495 PABPN1Q86U42 306 aaKnown RBP eCLIP8.53□□□□□ -1.04
ATPAF1-212ENST00000542495 FOXD4L1Q9NU39 408 aa8.52□□□□□ -1.05
ATPAF1-212ENST00000542495 UNC13AQ9UPW8 1703 aa8.51□□□□□ -1.05
ATPAF1-212ENST00000542495 RNF216Q9NWF9 866 aaPredicted RBP8.47□□□□□ -1.05
ATPAF1-212ENST00000542495 BICRAQ9NZM4 1560 aa8.45□□□□□ -1.06
ATPAF1-212ENST00000542495 LOC105371045A0A1W2PR82 267 aa8.45□□□□□ -1.06
ATPAF1-212ENST00000542495 SLC24A1O60721 1099 aa8.45□□□□□ -1.06
ATPAF1-212ENST00000542495 PCGF6Q9BYE7 350 aa8.44□□□□□ -1.06
ATPAF1-212ENST00000542495 CECR2Q9BXF3 1484 aa8.42□□□□□ -1.06
ATPAF1-212ENST00000542495 RTN4Q9NQC3 1192 aaKnown RBP8.42□□□□□ -1.06
ATPAF1-212ENST00000542495 MROH2BQ7Z745 1585 aa8.41□□□□□ -1.06
ATPAF1-212ENST00000542495 AMER1Q5JTC6 1135 aaPredicted RBP8.37□□□□□ -1.07
ATPAF1-212ENST00000542495 TRIM41Q8WV44 630 aa8.36□□□□□ -1.07
ATPAF1-212ENST00000542495 BAZ1AQ9NRL2 1556 aaPredicted RBP8.36□□□□□ -1.07
ATPAF1-212ENST00000542495 WIZO95785 1651 aa8.35□□□□□ -1.07
ATPAF1-212ENST00000542495 TRIM26Q12899 539 aaPredicted RBP8.35□□□□□ -1.07
ATPAF1-212ENST00000542495 EIF4G1Q04637 1599 aaKnown RBP8.33□□□□□ -1.08
ATPAF1-212ENST00000542495 CC2D2AQ9P2K1 1620 aa8.29□□□□□ -1.08
ATPAF1-212ENST00000542495 PPARGC1BQ86YN6 1023 aaKnown RBP8.27□□□□□ -1.09
ATPAF1-212ENST00000542495 TOP2AP11388 1531 aaKnown RBP8.26□□□□□ -1.09
ATPAF1-212ENST00000542495 SMARCA4P51532 1647 aa8.26□□□□□ -1.09
ATPAF1-212ENST00000542495 DSG3P32926 999 aa8.25□□□□□ -1.09
ATPAF1-212ENST00000542495 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.25□□□□□ -1.09
ATPAF1-212ENST00000542495 SLC4A2P04920 1241 aa8.23□□□□□ -1.09
ATPAF1-212ENST00000542495 FAM9AQ8IZU1 332 aaPredicted RBP8.22□□□□□ -1.09
ATPAF1-212ENST00000542495 SMARCA2P51531 1590 aa8.21□□□□□ -1.1
ATPAF1-212ENST00000542495 ZEB1P37275 1124 aaPredicted RBP8.2□□□□□ -1.1
ATPAF1-212ENST00000542495 CCDC88BA6NC98 1476 aa8.2□□□□□ -1.1
ATPAF1-212ENST00000542495 FKBP8Q14318 412 aa8.17□□□□□ -1.1
ATPAF1-212ENST00000542495 SPINK5Q9NQ38 1064 aaPredicted RBP8.17□□□□□ -1.1
ATPAF1-212ENST00000542495 PEG3Q9GZU2 1588 aa8.16□□□□□ -1.1
ATPAF1-212ENST00000542495 ATXN8OSP0DMR3 200 aa8.15□□□□□ -1.1
ATPAF1-212ENST00000542495 ABCC8Q09428 1581 aa8.14□□□□□ -1.11
ATPAF1-212ENST00000542495 WRNQ14191 1432 aaPredicted RBP eCLIP8.12□□□□□ -1.11
ATPAF1-212ENST00000542495 MYCNP04198 464 aaPredicted RBP8.12□□□□□ -1.11
ATPAF1-212ENST00000542495 EEA1Q15075 1411 aa8.11□□□□□ -1.11
ATPAF1-212ENST00000542495 CAPN15O75808 1086 aa8.1□□□□□ -1.11
ATPAF1-212ENST00000542495 U3KPZ7 1027 aaPredicted RBP8.1□□□□□ -1.11
ATPAF1-212ENST00000542495 TNIKQ9UKE5 1360 aa8.08□□□□□ -1.12
ATPAF1-212ENST00000542495 SOGA1O94964 1423 aa8.08□□□□□ -1.12
ATPAF1-212ENST00000542495 CEP162Q5TB80 1403 aa8.06□□□□□ -1.12
ATPAF1-212ENST00000542495 RUSC2Q8N2Y8 1516 aa8.04□□□□□ -1.12
ATPAF1-212ENST00000542495 ATAD2BQ9ULI0 1458 aa8.03□□□□□ -1.12
ATPAF1-212ENST00000542495 DNAJC5Q9H3Z4 198 aa8.03□□□□□ -1.12
ATPAF1-212ENST00000542495 GOLGA3Q08378 1498 aa8.02□□□□□ -1.13
ATPAF1-212ENST00000542495 SYNJ1O43426 1573 aa8.01□□□□□ -1.13
ATPAF1-212ENST00000542495 KIF21BO75037 1637 aa8□□□□□ -1.13
ATPAF1-212ENST00000542495 NCAPD3P42695 1498 aa8□□□□□ -1.13
ATPAF1-212ENST00000542495 BAZ1BQ9UIG0 1483 aaKnown RBP7.98□□□□□ -1.13
ATPAF1-212ENST00000542495 CEP164Q9UPV0 1460 aa7.98□□□□□ -1.13
ATPAF1-212ENST00000542495 CUX2O14529 1486 aa7.97□□□□□ -1.13
ATPAF1-212ENST00000542495 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.95□□□□□ -1.14
ATPAF1-212ENST00000542495 ERCC6Q03468 1493 aa7.95□□□□□ -1.14
ATPAF1-212ENST00000542495 SP7Q8TDD2 431 aaPredicted RBP7.94□□□□□ -1.14
ATPAF1-212ENST00000542495 UBTFP17480 764 aaKnown RBP7.94□□□□□ -1.14
ATPAF1-212ENST00000542495 CCER1Q8TC90 406 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms