RNA–Protein interactions for RNA: ENST00000541852.5

ITM2C-208, Transcript of integral membrane protein 2C, humanhuman

TSL 3

Gene ITM2C, Length 572 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2C-208ENST00000541852 NISCHQ9Y2I1 1504 aa37.19■■■■□ 3.54
ITM2C-208ENST00000541852 CCDC180Q9P1Z9 1646 aa33.35■■■□□ 2.93
ITM2C-208ENST00000541852 ABCC9O60706 1549 aa33.3■■■□□ 2.92
ITM2C-208ENST00000541852 RB1CC1Q8TDY2 1594 aa31.79■■■□□ 2.68
ITM2C-208ENST00000541852 NACADO15069 1562 aa31.6■■■□□ 2.65
ITM2C-208ENST00000541852 DCAF8L2P0C7V8 631 aa31.48■■■□□ 2.63
ITM2C-208ENST00000541852 DNAJC5BQ9UF47 199 aa31.26■■■□□ 2.59
ITM2C-208ENST00000541852 MYO15BQ96JP2 1530 aa31.21■■■□□ 2.59
ITM2C-208ENST00000541852 PABPN1Q86U42 306 aaKnown RBP eCLIP31.05■■■□□ 2.56
ITM2C-208ENST00000541852 UNC13AQ9UPW8 1703 aa30.91■■■□□ 2.54
ITM2C-208ENST00000541852 DCAF1Q9Y4B6 1507 aa30.78■■■□□ 2.52
ITM2C-208ENST00000541852 ZCCHC6Q5VYS8 1495 aaKnown RBP30.78■■■□□ 2.52
ITM2C-208ENST00000541852 BICRAQ9NZM4 1560 aa30.75■■■□□ 2.51
ITM2C-208ENST00000541852 SHROOM4Q9ULL8 1493 aa30.51■■■□□ 2.48
ITM2C-208ENST00000541852 SCRIBQ14160 1630 aa30.29■■■□□ 2.44
ITM2C-208ENST00000541852 CC2D2AQ9P2K1 1620 aa30.09■■■□□ 2.41
ITM2C-208ENST00000541852 CECR2Q9BXF3 1484 aa30.06■■■□□ 2.4
ITM2C-208ENST00000541852 EIF4G1Q04637 1599 aaKnown RBP30.04■■■□□ 2.4
ITM2C-208ENST00000541852 NCAPD3P42695 1498 aa29.19■■■□□ 2.26
ITM2C-208ENST00000541852 ATAD2BQ9ULI0 1458 aa29.04■■■□□ 2.24
ITM2C-208ENST00000541852 SMARCA2P51531 1590 aa29■■■□□ 2.23
ITM2C-208ENST00000541852 SMARCA4P51532 1647 aa28.96■■■□□ 2.23
ITM2C-208ENST00000541852 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
ITM2C-208ENST00000541852 BAZ1AQ9NRL2 1556 aaPredicted RBP28.89■■■□□ 2.22
ITM2C-208ENST00000541852 DNAJC5Q9H3Z4 198 aa28.84■■■□□ 2.21
ITM2C-208ENST00000541852 ERCC6Q03468 1493 aa28.83■■■□□ 2.21
ITM2C-208ENST00000541852 CUX2O14529 1486 aa28.81■■■□□ 2.2
ITM2C-208ENST00000541852 BAZ1BQ9UIG0 1483 aaKnown RBP28.76■■■□□ 2.19
ITM2C-208ENST00000541852 PEG3Q9GZU2 1588 aa28.73■■■□□ 2.19
ITM2C-208ENST00000541852 MROH2BQ7Z745 1585 aa28.59■■■□□ 2.17
ITM2C-208ENST00000541852 NESP48681 1621 aa28.58■■■□□ 2.17
ITM2C-208ENST00000541852 LAMC3Q9Y6N6 1575 aa28.5■■■□□ 2.15
ITM2C-208ENST00000541852 PDS5BQ9NTI5 1447 aa28.41■■■□□ 2.14
ITM2C-208ENST00000541852 CADPSQ9ULU8 1353 aa28.31■■■□□ 2.12
ITM2C-208ENST00000541852 THOC2Q8NI27 1593 aaKnown RBP28.27■■■□□ 2.12
ITM2C-208ENST00000541852 WIZO95785 1651 aa28.23■■■□□ 2.11
ITM2C-208ENST00000541852 KIF21AQ7Z4S6 1674 aa28.18■■■□□ 2.1
ITM2C-208ENST00000541852 RSF1Q96T23 1441 aaPredicted RBP28.06■■■□□ 2.08
ITM2C-208ENST00000541852 MRC2Q9UBG0 1479 aa28.06■■■□□ 2.08
ITM2C-208ENST00000541852 WDR62O43379 1518 aa27.96■■■□□ 2.07
ITM2C-208ENST00000541852 CEP164Q9UPV0 1460 aa27.95■■■□□ 2.07
ITM2C-208ENST00000541852 CFTRP13569 1480 aa27.95■■■□□ 2.06
ITM2C-208ENST00000541852 TOP2AP11388 1531 aaKnown RBP27.92■■■□□ 2.06
ITM2C-208ENST00000541852 FANCD2Q9BXW9 1451 aa27.92■■■□□ 2.06
ITM2C-208ENST00000541852 CCDC88BA6NC98 1476 aa27.64■■■□□ 2.01
ITM2C-208ENST00000541852 URB2Q14146 1524 aaKnown RBP27.63■■■□□ 2.01
ITM2C-208ENST00000541852 OSCARQ8IYS5 282 aa27.6■■■□□ 2.01
ITM2C-208ENST00000541852 PRDM2Q13029 1718 aa27.58■■■□□ 2.01
ITM2C-208ENST00000541852 TRIM41Q8WV44 630 aa27.49■■□□□ 1.99
ITM2C-208ENST00000541852 ABCC8Q09428 1581 aa27.48■■□□□ 1.99
ITM2C-208ENST00000541852 IFT140Q96RY7 1462 aa27.44■■□□□ 1.98
ITM2C-208ENST00000541852 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
ITM2C-208ENST00000541852 DNMBPQ6XZF7 1577 aa27.27■■□□□ 1.96
ITM2C-208ENST00000541852 ZNF608Q9ULD9 1512 aaPredicted RBP27.27■■□□□ 1.96
ITM2C-208ENST00000541852 EIF4G3O43432 1585 aaKnown RBP27.1■■□□□ 1.93
ITM2C-208ENST00000541852 TARBP1Q13395 1621 aaKnown RBP27.09■■□□□ 1.93
ITM2C-208ENST00000541852 AQRO60306 1485 aaKnown RBP eCLIP27.09■■□□□ 1.931e-8■■■□□ 18.9
ITM2C-208ENST00000541852 POLA1P09884 1462 aaPredicted RBP27.09■■□□□ 1.93
ITM2C-208ENST00000541852 SOGA1O94964 1423 aa27.06■■□□□ 1.92
ITM2C-208ENST00000541852 RIMBP3CA6NJZ7 1639 aa27.02■■□□□ 1.92
ITM2C-208ENST00000541852 RIMBP3BA6NNM3 1639 aa27.02■■□□□ 1.92
ITM2C-208ENST00000541852 RIMBP3Q9UFD9 1639 aa27.02■■□□□ 1.92
ITM2C-208ENST00000541852 FBLN2P98095 1184 aa26.99■■□□□ 1.91
ITM2C-208ENST00000541852 ARHGEF11O15085 1522 aa26.97■■□□□ 1.91
ITM2C-208ENST00000541852 RAD54L2Q9Y4B4 1467 aa26.96■■□□□ 1.91
ITM2C-208ENST00000541852 TDRD9Q8NDG6 1382 aaKnown RBP26.95■■□□□ 1.9
ITM2C-208ENST00000541852 WDR97A6NE52 1622 aa26.94■■□□□ 1.9
ITM2C-208ENST00000541852 FGD5Q6ZNL6 1462 aa26.91■■□□□ 1.9
ITM2C-208ENST00000541852 CYB5RLQ6IPT4 315 aa26.89■■□□□ 1.9
ITM2C-208ENST00000541852 CHD1O14646 1710 aa26.89■■□□□ 1.9
ITM2C-208ENST00000541852 CUX1P39880 1505 aa26.86■■□□□ 1.89
ITM2C-208ENST00000541852 SUPT5HO00267 1087 aaKnown RBP26.86■■□□□ 1.89
ITM2C-208ENST00000541852 CHMP7Q8WUX9 453 aaPredicted RBP26.85■■□□□ 1.89
ITM2C-208ENST00000541852 GRIN2BQ13224 1484 aa26.8■■□□□ 1.88
ITM2C-208ENST00000541852 MAGI1Q96QZ7 1491 aaPredicted RBP26.8■■□□□ 1.88
ITM2C-208ENST00000541852 SNAPC4Q5SXM2 1469 aa26.78■■□□□ 1.88
ITM2C-208ENST00000541852 SYNJ2O15056 1496 aa26.69■■□□□ 1.86
ITM2C-208ENST00000541852 GAPVD1Q14C86 1478 aa26.69■■□□□ 1.86
ITM2C-208ENST00000541852 SYNJ1O43426 1573 aa26.69■■□□□ 1.86
ITM2C-208ENST00000541852 ARAP1Q96P48 1450 aa26.68■■□□□ 1.86
ITM2C-208ENST00000541852 ABCA10Q8WWZ4 1543 aa26.65■■□□□ 1.86
ITM2C-208ENST00000541852 CLASP1Q7Z460 1538 aa26.63■■□□□ 1.85
ITM2C-208ENST00000541852 WRNQ14191 1432 aaPredicted RBP eCLIP26.61■■□□□ 1.85
ITM2C-208ENST00000541852 TRHP20396 242 aaPredicted RBP26.59■■□□□ 1.85
ITM2C-208ENST00000541852 PBRM1Q86U86 1689 aa26.56■■□□□ 1.84
ITM2C-208ENST00000541852 ABCA5Q8WWZ7 1642 aa26.54■■□□□ 1.84
ITM2C-208ENST00000541852 TOP2BQ02880 1626 aa26.47■■□□□ 1.83
ITM2C-208ENST00000541852 BIVM-ERCC5R4GMW8 1640 aa26.44■■□□□ 1.82
ITM2C-208ENST00000541852 GRIN2AQ12879 1464 aa26.41■■□□□ 1.82
ITM2C-208ENST00000541852 FHAD1B1AJZ9 1412 aa26.38■■□□□ 1.81
ITM2C-208ENST00000541852 ERICH3Q5RHP9 1530 aa26.34■■□□□ 1.81
ITM2C-208ENST00000541852 NUP160Q12769 1436 aa26.33■■□□□ 1.81
ITM2C-208ENST00000541852 ADAMTS12P58397 1594 aa26.32■■□□□ 1.8
ITM2C-208ENST00000541852 CEP170Q5SW79 1584 aa26.24■■□□□ 1.79
ITM2C-208ENST00000541852 JPH4Q96JJ6 628 aa26.18■■□□□ 1.78
ITM2C-208ENST00000541852 SHROOM2Q13796 1616 aa26.17■■□□□ 1.78
ITM2C-208ENST00000541852 ERCC6L2Q5T890 1561 aa26.14■■□□□ 1.78
ITM2C-208ENST00000541852 PRG4Q92954 1404 aaPredicted RBP26.09■■□□□ 1.77
ITM2C-208ENST00000541852 KIF27Q86VH2 1401 aa26.05■■□□□ 1.76
ITM2C-208ENST00000541852 IGF1RP08069 1367 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms