RNA–Protein interactions for RNA: ENST00000540803.1

RAB35-204, Transcript of RAB35, member RAS oncogene family, humanhuman

TSL 2

Gene RAB35, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB35-204ENST00000540803 NISCHQ9Y2I1 1504 aa47.18■■■■■ 5.14
RAB35-204ENST00000540803 CCDC180Q9P1Z9 1646 aa42.11■■■■■ 4.33
RAB35-204ENST00000540803 ABCC9O60706 1549 aa41.45■■■■■ 4.23
RAB35-204ENST00000540803 RB1CC1Q8TDY2 1594 aa39.75■■■■□ 3.95
RAB35-204ENST00000540803 NACADO15069 1562 aa39.63■■■■□ 3.93
RAB35-204ENST00000540803 DCAF8L2P0C7V8 631 aa39.46■■■■□ 3.91
RAB35-204ENST00000540803 MYO15BQ96JP2 1530 aa39.29■■■■□ 3.88
RAB35-204ENST00000540803 ZCCHC6Q5VYS8 1495 aaKnown RBP39.25■■■■□ 3.87
RAB35-204ENST00000540803 DCAF1Q9Y4B6 1507 aa39.02■■■■□ 3.84
RAB35-204ENST00000540803 UNC13AQ9UPW8 1703 aa38.94■■■■□ 3.82
RAB35-204ENST00000540803 PABPN1Q86U42 306 aaKnown RBP eCLIP38.66■■■■□ 3.78
RAB35-204ENST00000540803 BICRAQ9NZM4 1560 aa38.6■■■■□ 3.77
RAB35-204ENST00000540803 SCRIBQ14160 1630 aa38.39■■■■□ 3.74
RAB35-204ENST00000540803 DNAJC5BQ9UF47 199 aa38.32■■■■□ 3.72
RAB35-204ENST00000540803 SHROOM4Q9ULL8 1493 aa38.1■■■■□ 3.69
RAB35-204ENST00000540803 EIF4G1Q04637 1599 aaKnown RBP37.59■■■■□ 3.61
RAB35-204ENST00000540803 CC2D2AQ9P2K1 1620 aa37.51■■■■□ 3.6
RAB35-204ENST00000540803 CECR2Q9BXF3 1484 aa37.27■■■■□ 3.56
RAB35-204ENST00000540803 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
RAB35-204ENST00000540803 BAZ1AQ9NRL2 1556 aaPredicted RBP36.58■■■■□ 3.45
RAB35-204ENST00000540803 NCAPD3P42695 1498 aa36.56■■■■□ 3.44
RAB35-204ENST00000540803 ATAD2BQ9ULI0 1458 aa36.55■■■■□ 3.44
RAB35-204ENST00000540803 SMARCA2P51531 1590 aa36.48■■■■□ 3.43
RAB35-204ENST00000540803 HMGXB3Q12766 1538 aa36.37■■■■□ 3.41
RAB35-204ENST00000540803 MROH2BQ7Z745 1585 aa36.36■■■■□ 3.41
RAB35-204ENST00000540803 PEG3Q9GZU2 1588 aa36.34■■■■□ 3.41
RAB35-204ENST00000540803 BAZ1BQ9UIG0 1483 aaKnown RBP36.22■■■■□ 3.39
RAB35-204ENST00000540803 WIZO95785 1651 aa35.99■■■■□ 3.35
RAB35-204ENST00000540803 RSF1Q96T23 1441 aaPredicted RBP35.82■■■■□ 3.32
RAB35-204ENST00000540803 NESP48681 1621 aa35.8■■■■□ 3.32
RAB35-204ENST00000540803 ERCC6Q03468 1493 aa35.73■■■■□ 3.31
RAB35-204ENST00000540803 LAMC3Q9Y6N6 1575 aa35.66■■■■□ 3.3
RAB35-204ENST00000540803 TOP2AP11388 1531 aaKnown RBP35.56■■■■□ 3.28
RAB35-204ENST00000540803 CUX2O14529 1486 aa35.48■■■■□ 3.27
RAB35-204ENST00000540803 CADPSQ9ULU8 1353 aa35.47■■■■□ 3.27
RAB35-204ENST00000540803 KIF21AQ7Z4S6 1674 aa35.42■■■■□ 3.26
RAB35-204ENST00000540803 PDS5BQ9NTI5 1447 aa35.39■■■■□ 3.26
RAB35-204ENST00000540803 THOC2Q8NI27 1593 aaKnown RBP35.36■■■■□ 3.25
RAB35-204ENST00000540803 CFTRP13569 1480 aa35.21■■■■□ 3.23
RAB35-204ENST00000540803 CCDC88BA6NC98 1476 aa35.13■■■■□ 3.21
RAB35-204ENST00000540803 FANCD2Q9BXW9 1451 aa35.08■■■■□ 3.21
RAB35-204ENST00000540803 MRC2Q9UBG0 1479 aa35.07■■■■□ 3.2
RAB35-204ENST00000540803 CEP164Q9UPV0 1460 aa35.05■■■■□ 3.2
RAB35-204ENST00000540803 PRDM2Q13029 1718 aa35.01■■■■□ 3.19
RAB35-204ENST00000540803 WDR62O43379 1518 aa35■■■■□ 3.19
RAB35-204ENST00000540803 URB2Q14146 1524 aaKnown RBP34.76■■■■□ 3.16
RAB35-204ENST00000540803 DNAJC5Q9H3Z4 198 aa34.71■■■■□ 3.15
RAB35-204ENST00000540803 SUPT5HO00267 1087 aaKnown RBP34.64■■■■□ 3.14
RAB35-204ENST00000540803 TOPBP1Q92547 1522 aa34.5■■■■□ 3.11
RAB35-204ENST00000540803 ABCC8Q09428 1581 aa34.44■■■■□ 3.1
RAB35-204ENST00000540803 DNMBPQ6XZF7 1577 aa34.44■■■■□ 3.1
RAB35-204ENST00000540803 IFT140Q96RY7 1462 aa34.33■■■■□ 3.09
RAB35-204ENST00000540803 ZNF608Q9ULD9 1512 aaPredicted RBP34.23■■■■□ 3.07
RAB35-204ENST00000540803 POLA1P09884 1462 aaPredicted RBP34.19■■■■□ 3.06
RAB35-204ENST00000540803 TARBP1Q13395 1621 aaKnown RBP34.17■■■■□ 3.06
RAB35-204ENST00000540803 CUX1P39880 1505 aa34.14■■■■□ 3.06
RAB35-204ENST00000540803 EIF4G3O43432 1585 aaKnown RBP34.1■■■■□ 3.05
RAB35-204ENST00000540803 FGD5Q6ZNL6 1462 aa34.05■■■■□ 3.04
RAB35-204ENST00000540803 RAD54L2Q9Y4B4 1467 aa34.04■■■■□ 3.04
RAB35-204ENST00000540803 SOGA1O94964 1423 aa34■■■■□ 3.03
RAB35-204ENST00000540803 AQRO60306 1485 aaKnown RBP eCLIP33.98■■■■□ 3.031e-7■■□□□ 12.1
RAB35-204ENST00000540803 OSCARQ8IYS5 282 aa33.9■■■■□ 3.02
RAB35-204ENST00000540803 WDR97A6NE52 1622 aa33.86■■■■□ 3.01
RAB35-204ENST00000540803 TDRD9Q8NDG6 1382 aaKnown RBP33.85■■■■□ 3.01
RAB35-204ENST00000540803 BIVM-ERCC5R4GMW8 1640 aa33.79■■■■□ 3
RAB35-204ENST00000540803 WRNQ14191 1432 aaPredicted RBP eCLIP33.77■■■■□ 3
RAB35-204ENST00000540803 TOP2BQ02880 1626 aa33.76■■■■□ 3
RAB35-204ENST00000540803 SYNJ1O43426 1573 aa33.76■■■□□ 2.99
RAB35-204ENST00000540803 CHD1O14646 1710 aa33.75■■■□□ 2.99
RAB35-204ENST00000540803 ABCA10Q8WWZ4 1543 aa33.71■■■□□ 2.99
RAB35-204ENST00000540803 SNAPC4Q5SXM2 1469 aa33.67■■■□□ 2.98
RAB35-204ENST00000540803 GRIN2BQ13224 1484 aa33.65■■■□□ 2.98
RAB35-204ENST00000540803 PBRM1Q86U86 1689 aa33.64■■■□□ 2.98
RAB35-204ENST00000540803 ABCA5Q8WWZ7 1642 aa33.64■■■□□ 2.98
RAB35-204ENST00000540803 GAPVD1Q14C86 1478 aa33.62■■■□□ 2.97
RAB35-204ENST00000540803 MAGI1Q96QZ7 1491 aaPredicted RBP33.6■■■□□ 2.97
RAB35-204ENST00000540803 FBLN2P98095 1184 aa33.58■■■□□ 2.97
RAB35-204ENST00000540803 RIMBP3CA6NJZ7 1639 aa33.48■■■□□ 2.95
RAB35-204ENST00000540803 RIMBP3BA6NNM3 1639 aa33.48■■■□□ 2.95
RAB35-204ENST00000540803 RIMBP3Q9UFD9 1639 aa33.48■■■□□ 2.95
RAB35-204ENST00000540803 SYNJ2O15056 1496 aa33.47■■■□□ 2.95
RAB35-204ENST00000540803 CHMP7Q8WUX9 453 aaPredicted RBP33.44■■■□□ 2.94
RAB35-204ENST00000540803 TRIM41Q8WV44 630 aa33.43■■■□□ 2.94
RAB35-204ENST00000540803 ARHGEF11O15085 1522 aa33.42■■■□□ 2.94
RAB35-204ENST00000540803 CLASP1Q7Z460 1538 aa33.35■■■□□ 2.93
RAB35-204ENST00000540803 ADAMTS12P58397 1594 aa33.33■■■□□ 2.93
RAB35-204ENST00000540803 ERICH3Q5RHP9 1530 aa33.3■■■□□ 2.92
RAB35-204ENST00000540803 GRIN2AQ12879 1464 aa33.23■■■□□ 2.91
RAB35-204ENST00000540803 FHAD1B1AJZ9 1412 aa33.21■■■□□ 2.91
RAB35-204ENST00000540803 ARAP1Q96P48 1450 aa33.14■■■□□ 2.9
RAB35-204ENST00000540803 CEP170Q5SW79 1584 aa33.11■■■□□ 2.89
RAB35-204ENST00000540803 NUP160Q12769 1436 aa33.11■■■□□ 2.89
RAB35-204ENST00000540803 CYB5RLQ6IPT4 315 aa33.08■■■□□ 2.89
RAB35-204ENST00000540803 KIF27Q86VH2 1401 aa33.07■■■□□ 2.88
RAB35-204ENST00000540803 IGF1RP08069 1367 aa32.99■■■□□ 2.87
RAB35-204ENST00000540803 CUL7Q14999 1698 aa32.95■■■□□ 2.87
RAB35-204ENST00000540803 SHROOM2Q13796 1616 aa32.92■■■□□ 2.86
RAB35-204ENST00000540803 ERCC6L2Q5T890 1561 aa32.88■■■□□ 2.85
RAB35-204ENST00000540803 RUSC2Q8N2Y8 1516 aa32.85■■■□□ 2.85
RAB35-204ENST00000540803 CARMIL1Q5VZK9 1371 aa32.78■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms