RNA–Protein interactions for RNA: ENST00000539960.1

PRPF19-204, Transcript of pre-mRNA processing factor 19, humanhuman

TSL 2

Gene PRPF19, Length 796 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF19-204ENST00000539960 NISCHQ9Y2I1 1504 aa32.36■■■□□ 2.77
PRPF19-204ENST00000539960 CCDC180Q9P1Z9 1646 aa28.61■■■□□ 2.17
PRPF19-204ENST00000539960 ABCC9O60706 1549 aa28.05■■■□□ 2.08
PRPF19-204ENST00000539960 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
PRPF19-204ENST00000539960 NACADO15069 1562 aa26.97■■□□□ 1.91
PRPF19-204ENST00000539960 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
PRPF19-204ENST00000539960 ZCCHC6Q5VYS8 1495 aaKnown RBP26.93■■□□□ 1.9
PRPF19-204ENST00000539960 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
PRPF19-204ENST00000539960 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
PRPF19-204ENST00000539960 PABPN1Q86U42 306 aaKnown RBP eCLIP26.32■■□□□ 1.8
PRPF19-204ENST00000539960 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
PRPF19-204ENST00000539960 SCRIBQ14160 1630 aa26.16■■□□□ 1.78
PRPF19-204ENST00000539960 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
PRPF19-204ENST00000539960 SHROOM4Q9ULL8 1493 aa25.87■■□□□ 1.73
PRPF19-204ENST00000539960 DNAJC5BQ9UF47 199 aa25.8■■□□□ 1.72
PRPF19-204ENST00000539960 EIF4G1Q04637 1599 aaKnown RBP25.45■■□□□ 1.66
PRPF19-204ENST00000539960 CC2D2AQ9P2K1 1620 aa25.34■■□□□ 1.65
PRPF19-204ENST00000539960 CECR2Q9BXF3 1484 aa25.22■■□□□ 1.63
PRPF19-204ENST00000539960 BAZ1AQ9NRL2 1556 aaPredicted RBP25.04■■□□□ 1.6
PRPF19-204ENST00000539960 SMARCA4P51532 1647 aa25.04■■□□□ 1.6
PRPF19-204ENST00000539960 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
PRPF19-204ENST00000539960 NCAPD3P42695 1498 aa24.95■■□□□ 1.58
PRPF19-204ENST00000539960 MROH2BQ7Z745 1585 aa24.94■■□□□ 1.58
PRPF19-204ENST00000539960 SMARCA2P51531 1590 aa24.88■■□□□ 1.57
PRPF19-204ENST00000539960 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
PRPF19-204ENST00000539960 HMGXB3Q12766 1538 aa24.75■■□□□ 1.55
PRPF19-204ENST00000539960 BAZ1BQ9UIG0 1483 aaKnown RBP24.72■■□□□ 1.55
PRPF19-204ENST00000539960 RSF1Q96T23 1441 aaPredicted RBP24.72■■□□□ 1.55
PRPF19-204ENST00000539960 WIZO95785 1651 aa24.62■■□□□ 1.53
PRPF19-204ENST00000539960 TOP2AP11388 1531 aaKnown RBP24.37■■□□□ 1.49
PRPF19-204ENST00000539960 NESP48681 1621 aa24.29■■□□□ 1.48
PRPF19-204ENST00000539960 CADPSQ9ULU8 1353 aa24.25■■□□□ 1.47
PRPF19-204ENST00000539960 SUPT5HO00267 1087 aaKnown RBP24.22■■□□□ 1.47
PRPF19-204ENST00000539960 LAMC3Q9Y6N6 1575 aa24.2■■□□□ 1.47
PRPF19-204ENST00000539960 ERCC6Q03468 1493 aa24.17■■□□□ 1.46
PRPF19-204ENST00000539960 CCDC88BA6NC98 1476 aa24.16■■□□□ 1.46
PRPF19-204ENST00000539960 PDS5BQ9NTI5 1447 aa24.12■■□□□ 1.45
PRPF19-204ENST00000539960 CFTRP13569 1480 aa24.08■■□□□ 1.45
PRPF19-204ENST00000539960 FANCD2Q9BXW9 1451 aa23.92■■□□□ 1.42
PRPF19-204ENST00000539960 KIF21AQ7Z4S6 1674 aa23.9■■□□□ 1.42
PRPF19-204ENST00000539960 CUX2O14529 1486 aa23.87■■□□□ 1.41
PRPF19-204ENST00000539960 CEP164Q9UPV0 1460 aa23.86■■□□□ 1.41
PRPF19-204ENST00000539960 THOC2Q8NI27 1593 aaKnown RBP23.82■■□□□ 1.4
PRPF19-204ENST00000539960 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
PRPF19-204ENST00000539960 PRDM2Q13029 1718 aa23.71■■□□□ 1.39
PRPF19-204ENST00000539960 WDR62O43379 1518 aa23.7■■□□□ 1.38
PRPF19-204ENST00000539960 URB2Q14146 1524 aaKnown RBP23.66■■□□□ 1.38
PRPF19-204ENST00000539960 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
PRPF19-204ENST00000539960 TOPBP1Q92547 1522 aa23.54■■□□□ 1.36
PRPF19-204ENST00000539960 DNMBPQ6XZF7 1577 aa23.48■■□□□ 1.35
PRPF19-204ENST00000539960 CUX1P39880 1505 aa23.38■■□□□ 1.33
PRPF19-204ENST00000539960 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
PRPF19-204ENST00000539960 POLA1P09884 1462 aaPredicted RBP23.34■■□□□ 1.33
PRPF19-204ENST00000539960 SOGA1O94964 1423 aa23.31■■□□□ 1.32
PRPF19-204ENST00000539960 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
PRPF19-204ENST00000539960 FGD5Q6ZNL6 1462 aa23.29■■□□□ 1.32
PRPF19-204ENST00000539960 RAD54L2Q9Y4B4 1467 aa23.27■■□□□ 1.32
PRPF19-204ENST00000539960 ZNF608Q9ULD9 1512 aaPredicted RBP23.27■■□□□ 1.32
PRPF19-204ENST00000539960 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
PRPF19-204ENST00000539960 AQRO60306 1485 aaKnown RBP eCLIP23.18■■□□□ 1.31e-6■■■■□ 19.5
PRPF19-204ENST00000539960 TDRD9Q8NDG6 1382 aaKnown RBP23.18■■□□□ 1.3
PRPF19-204ENST00000539960 DNAJC5Q9H3Z4 198 aa23.18■■□□□ 1.3
PRPF19-204ENST00000539960 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
PRPF19-204ENST00000539960 SYNJ1O43426 1573 aa23.15■■□□□ 1.3
PRPF19-204ENST00000539960 BIVM-ERCC5R4GMW8 1640 aa23.13■■□□□ 1.29
PRPF19-204ENST00000539960 EIF4G3O43432 1585 aaKnown RBP23.09■■□□□ 1.29
PRPF19-204ENST00000539960 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
PRPF19-204ENST00000539960 OSCARQ8IYS5 282 aa23.03■■□□□ 1.28
PRPF19-204ENST00000539960 WDR97A6NE52 1622 aa23.03■■□□□ 1.28
PRPF19-204ENST00000539960 GAPVD1Q14C86 1478 aa23■■□□□ 1.27
PRPF19-204ENST00000539960 GRIN2BQ13224 1484 aa22.98■■□□□ 1.27
PRPF19-204ENST00000539960 FBLN2P98095 1184 aa22.95■■□□□ 1.26
PRPF19-204ENST00000539960 SNAPC4Q5SXM2 1469 aa22.92■■□□□ 1.26
PRPF19-204ENST00000539960 ABCA5Q8WWZ7 1642 aa22.91■■□□□ 1.26
PRPF19-204ENST00000539960 CHMP7Q8WUX9 453 aaPredicted RBP22.89■■□□□ 1.25
PRPF19-204ENST00000539960 MAGI1Q96QZ7 1491 aaPredicted RBP22.89■■□□□ 1.25
PRPF19-204ENST00000539960 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
PRPF19-204ENST00000539960 PBRM1Q86U86 1689 aa22.81■■□□□ 1.24
PRPF19-204ENST00000539960 SYNJ2O15056 1496 aa22.81■■□□□ 1.24
PRPF19-204ENST00000539960 KIF27Q86VH2 1401 aa22.81■■□□□ 1.24
PRPF19-204ENST00000539960 ERICH3Q5RHP9 1530 aa22.78■■□□□ 1.24
PRPF19-204ENST00000539960 IGF1RP08069 1367 aa22.76■■□□□ 1.23
PRPF19-204ENST00000539960 CHD1O14646 1710 aa22.76■■□□□ 1.23
PRPF19-204ENST00000539960 FHAD1B1AJZ9 1412 aa22.75■■□□□ 1.23
PRPF19-204ENST00000539960 ADAMTS12P58397 1594 aa22.68■■□□□ 1.22
PRPF19-204ENST00000539960 GRIN2AQ12879 1464 aa22.66■■□□□ 1.22
PRPF19-204ENST00000539960 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
PRPF19-204ENST00000539960 RUSC2Q8N2Y8 1516 aa22.62■■□□□ 1.21
PRPF19-204ENST00000539960 CARMIL1Q5VZK9 1371 aa22.61■■□□□ 1.21
PRPF19-204ENST00000539960 NUP160Q12769 1436 aa22.58■■□□□ 1.21
PRPF19-204ENST00000539960 CLASP1Q7Z460 1538 aa22.57■■□□□ 1.2
PRPF19-204ENST00000539960 CUL7Q14999 1698 aa22.53■■□□□ 1.2
PRPF19-204ENST00000539960 ARHGEF11O15085 1522 aa22.52■■□□□ 1.19
PRPF19-204ENST00000539960 CEP170Q5SW79 1584 aa22.51■■□□□ 1.19
PRPF19-204ENST00000539960 RIMBP3CA6NJZ7 1639 aa22.48■■□□□ 1.19
PRPF19-204ENST00000539960 RIMBP3BA6NNM3 1639 aa22.48■■□□□ 1.19
PRPF19-204ENST00000539960 RIMBP3Q9UFD9 1639 aa22.48■■□□□ 1.19
PRPF19-204ENST00000539960 CSRNP3Q8WYN3 585 aa22.46■■□□□ 1.19
PRPF19-204ENST00000539960 JPH4Q96JJ6 628 aa22.46■■□□□ 1.19
PRPF19-204ENST00000539960 CYB5RLQ6IPT4 315 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms