RNA–Protein interactions for RNA: ENST00000539712.5

DDB1-215, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,020 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-215ENST00000539712 NISCHQ9Y2I1 1504 aa41.64■■■■■ 4.26
DDB1-215ENST00000539712 CCDC180Q9P1Z9 1646 aa37.13■■■■□ 3.53
DDB1-215ENST00000539712 ABCC9O60706 1549 aa36.82■■■■□ 3.48
DDB1-215ENST00000539712 RB1CC1Q8TDY2 1594 aa35.16■■■■□ 3.22
DDB1-215ENST00000539712 NACADO15069 1562 aa35.04■■■■□ 3.2
DDB1-215ENST00000539712 DCAF8L2P0C7V8 631 aa34.93■■■■□ 3.18
DDB1-215ENST00000539712 MYO15BQ96JP2 1530 aa34.73■■■■□ 3.15
DDB1-215ENST00000539712 ZCCHC6Q5VYS8 1495 aaKnown RBP34.58■■■■□ 3.13
DDB1-215ENST00000539712 DCAF1Q9Y4B6 1507 aa34.42■■■■□ 3.1
DDB1-215ENST00000539712 UNC13AQ9UPW8 1703 aa34.4■■■■□ 3.1
DDB1-215ENST00000539712 PABPN1Q86U42 306 aaKnown RBP eCLIP34.39■■■■□ 3.1
DDB1-215ENST00000539712 DNAJC5BQ9UF47 199 aa34.35■■■■□ 3.09
DDB1-215ENST00000539712 BICRAQ9NZM4 1560 aa34.23■■■■□ 3.07
DDB1-215ENST00000539712 SCRIBQ14160 1630 aa33.87■■■■□ 3.01
DDB1-215ENST00000539712 SHROOM4Q9ULL8 1493 aa33.71■■■□□ 2.99
DDB1-215ENST00000539712 EIF4G1Q04637 1599 aaKnown RBP33.3■■■□□ 2.92
DDB1-215ENST00000539712 CC2D2AQ9P2K1 1620 aa33.28■■■□□ 2.92
DDB1-215ENST00000539712 CECR2Q9BXF3 1484 aa33.12■■■□□ 2.89
DDB1-215ENST00000539712 NCAPD3P42695 1498 aa32.41■■■□□ 2.78
DDB1-215ENST00000539712 SMARCA4P51532 1647 aa32.37■■■□□ 2.77
DDB1-215ENST00000539712 ATAD2BQ9ULI0 1458 aa32.35■■■□□ 2.77
DDB1-215ENST00000539712 BAZ1AQ9NRL2 1556 aaPredicted RBP32.25■■■□□ 2.75
DDB1-215ENST00000539712 SMARCA2P51531 1590 aa32.21■■■□□ 2.75
DDB1-215ENST00000539712 HMGXB3Q12766 1538 aa32.14■■■□□ 2.74
DDB1-215ENST00000539712 MROH2BQ7Z745 1585 aa32.11■■■□□ 2.73
DDB1-215ENST00000539712 PEG3Q9GZU2 1588 aa32.09■■■□□ 2.73
DDB1-215ENST00000539712 BAZ1BQ9UIG0 1483 aaKnown RBP32■■■□□ 2.71
DDB1-215ENST00000539712 NESP48681 1621 aa31.77■■■□□ 2.68
DDB1-215ENST00000539712 WIZO95785 1651 aa31.7■■■□□ 2.67
DDB1-215ENST00000539712 ERCC6Q03468 1493 aa31.69■■■□□ 2.66
DDB1-215ENST00000539712 RSF1Q96T23 1441 aaPredicted RBP31.6■■■□□ 2.65
DDB1-215ENST00000539712 CUX2O14529 1486 aa31.55■■■□□ 2.64
DDB1-215ENST00000539712 LAMC3Q9Y6N6 1575 aa31.54■■■□□ 2.64
DDB1-215ENST00000539712 CADPSQ9ULU8 1353 aa31.43■■■□□ 2.62
DDB1-215ENST00000539712 PDS5BQ9NTI5 1447 aa31.35■■■□□ 2.61
DDB1-215ENST00000539712 THOC2Q8NI27 1593 aaKnown RBP31.33■■■□□ 2.61
DDB1-215ENST00000539712 TOP2AP11388 1531 aaKnown RBP31.32■■■□□ 2.6
DDB1-215ENST00000539712 KIF21AQ7Z4S6 1674 aa31.31■■■□□ 2.6
DDB1-215ENST00000539712 DNAJC5Q9H3Z4 198 aa31.19■■■□□ 2.58
DDB1-215ENST00000539712 CFTRP13569 1480 aa31.15■■■□□ 2.58
DDB1-215ENST00000539712 MRC2Q9UBG0 1479 aa31.07■■■□□ 2.56
DDB1-215ENST00000539712 FANCD2Q9BXW9 1451 aa31.04■■■□□ 2.56
DDB1-215ENST00000539712 CCDC88BA6NC98 1476 aa31.01■■■□□ 2.56
DDB1-215ENST00000539712 WDR62O43379 1518 aa31■■■□□ 2.55
DDB1-215ENST00000539712 CEP164Q9UPV0 1460 aa31■■■□□ 2.55
DDB1-215ENST00000539712 URB2Q14146 1524 aaKnown RBP30.8■■■□□ 2.52
DDB1-215ENST00000539712 PRDM2Q13029 1718 aa30.76■■■□□ 2.51
DDB1-215ENST00000539712 TOPBP1Q92547 1522 aa30.51■■■□□ 2.47
DDB1-215ENST00000539712 SUPT5HO00267 1087 aaKnown RBP30.42■■■□□ 2.46
DDB1-215ENST00000539712 ABCC8Q09428 1581 aa30.41■■■□□ 2.46
DDB1-215ENST00000539712 IFT140Q96RY7 1462 aa30.39■■■□□ 2.46
DDB1-215ENST00000539712 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.46
DDB1-215ENST00000539712 ZNF608Q9ULD9 1512 aaPredicted RBP30.36■■■□□ 2.45
DDB1-215ENST00000539712 TARBP1Q13395 1621 aaKnown RBP30.22■■■□□ 2.43
DDB1-215ENST00000539712 POLA1P09884 1462 aaPredicted RBP30.22■■■□□ 2.43
DDB1-215ENST00000539712 OSCARQ8IYS5 282 aa30.2■■■□□ 2.43
DDB1-215ENST00000539712 CUX1P39880 1505 aa30.14■■■□□ 2.42
DDB1-215ENST00000539712 EIF4G3O43432 1585 aaKnown RBP30.14■■■□□ 2.42
DDB1-215ENST00000539712 AQRO60306 1485 aaKnown RBP eCLIP30.13■■■□□ 2.415e-7■■■□□ 14.8
DDB1-215ENST00000539712 RAD54L2Q9Y4B4 1467 aa30.12■■■□□ 2.41
DDB1-215ENST00000539712 SOGA1O94964 1423 aa30.09■■■□□ 2.41
DDB1-215ENST00000539712 FGD5Q6ZNL6 1462 aa30.07■■■□□ 2.4
DDB1-215ENST00000539712 TDRD9Q8NDG6 1382 aaKnown RBP30■■■□□ 2.39
DDB1-215ENST00000539712 TRIM41Q8WV44 630 aa29.89■■■□□ 2.38
DDB1-215ENST00000539712 WDR97A6NE52 1622 aa29.86■■■□□ 2.37
DDB1-215ENST00000539712 CHD1O14646 1710 aa29.83■■■□□ 2.37
DDB1-215ENST00000539712 SNAPC4Q5SXM2 1469 aa29.79■■■□□ 2.36
DDB1-215ENST00000539712 FBLN2P98095 1184 aa29.78■■■□□ 2.36
DDB1-215ENST00000539712 ABCA10Q8WWZ4 1543 aa29.76■■■□□ 2.36
DDB1-215ENST00000539712 GRIN2BQ13224 1484 aa29.76■■■□□ 2.35
DDB1-215ENST00000539712 RIMBP3CA6NJZ7 1639 aa29.74■■■□□ 2.35
DDB1-215ENST00000539712 RIMBP3BA6NNM3 1639 aa29.74■■■□□ 2.35
DDB1-215ENST00000539712 RIMBP3Q9UFD9 1639 aa29.74■■■□□ 2.35
DDB1-215ENST00000539712 WRNQ14191 1432 aaPredicted RBP eCLIP29.74■■■□□ 2.35
DDB1-215ENST00000539712 TOP2BQ02880 1626 aa29.72■■■□□ 2.35
DDB1-215ENST00000539712 GAPVD1Q14C86 1478 aa29.72■■■□□ 2.35
DDB1-215ENST00000539712 MAGI1Q96QZ7 1491 aaPredicted RBP29.72■■■□□ 2.35
DDB1-215ENST00000539712 SYNJ1O43426 1573 aa29.72■■■□□ 2.35
DDB1-215ENST00000539712 BIVM-ERCC5R4GMW8 1640 aa29.71■■■□□ 2.35
DDB1-215ENST00000539712 ARHGEF11O15085 1522 aa29.71■■■□□ 2.35
DDB1-215ENST00000539712 ABCA5Q8WWZ7 1642 aa29.67■■■□□ 2.34
DDB1-215ENST00000539712 CHMP7Q8WUX9 453 aaPredicted RBP29.64■■■□□ 2.34
DDB1-215ENST00000539712 SYNJ2O15056 1496 aa29.62■■■□□ 2.33
DDB1-215ENST00000539712 PBRM1Q86U86 1689 aa29.62■■■□□ 2.33
DDB1-215ENST00000539712 CLASP1Q7Z460 1538 aa29.56■■■□□ 2.32
DDB1-215ENST00000539712 CYB5RLQ6IPT4 315 aa29.48■■■□□ 2.31
DDB1-215ENST00000539712 ARAP1Q96P48 1450 aa29.46■■■□□ 2.31
DDB1-215ENST00000539712 ADAMTS12P58397 1594 aa29.4■■■□□ 2.3
DDB1-215ENST00000539712 GRIN2AQ12879 1464 aa29.39■■■□□ 2.3
DDB1-215ENST00000539712 ERICH3Q5RHP9 1530 aa29.37■■■□□ 2.29
DDB1-215ENST00000539712 FHAD1B1AJZ9 1412 aa29.36■■■□□ 2.29
DDB1-215ENST00000539712 NUP160Q12769 1436 aa29.31■■■□□ 2.28
DDB1-215ENST00000539712 CEP170Q5SW79 1584 aa29.28■■■□□ 2.28
DDB1-215ENST00000539712 IGF1RP08069 1367 aa29.17■■■□□ 2.26
DDB1-215ENST00000539712 ERCC6L2Q5T890 1561 aa29.16■■■□□ 2.26
DDB1-215ENST00000539712 KIF27Q86VH2 1401 aa29.14■■■□□ 2.26
DDB1-215ENST00000539712 SHROOM2Q13796 1616 aa29.11■■■□□ 2.25
DDB1-215ENST00000539712 JPH4Q96JJ6 628 aa29.01■■■□□ 2.23
DDB1-215ENST00000539712 RUSC2Q8N2Y8 1516 aa28.98■■■□□ 2.23
DDB1-215ENST00000539712 CUL7Q14999 1698 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms