RNA–Protein interactions for RNA: ENST00000539587.5

LRTOMT-217, Transcript of leucine rich transmembrane and O-methyltransferase domain containing, humanhuman

TSL 2 BASIC

Gene LRTOMT, Length 428 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTOMT-217ENST00000539587 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
LRTOMT-217ENST00000539587 ABCC9O60706 1549 aa17.22■□□□□ 0.35
LRTOMT-217ENST00000539587 CCDC180Q9P1Z9 1646 aa16.97■□□□□ 0.31
LRTOMT-217ENST00000539587 DNAJC5BQ9UF47 199 aa16.59■□□□□ 0.25
LRTOMT-217ENST00000539587 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.2
LRTOMT-217ENST00000539587 NACADO15069 1562 aa16.12■□□□□ 0.17
LRTOMT-217ENST00000539587 PABPN1Q86U42 306 aaKnown RBP eCLIP16.01■□□□□ 0.15
LRTOMT-217ENST00000539587 UNC13AQ9UPW8 1703 aa15.99■□□□□ 0.15
LRTOMT-217ENST00000539587 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
LRTOMT-217ENST00000539587 MYO15BQ96JP2 1530 aa15.86■□□□□ 0.13
LRTOMT-217ENST00000539587 DCAF8L2P0C7V8 631 aa15.85■□□□□ 0.13
LRTOMT-217ENST00000539587 SHROOM4Q9ULL8 1493 aa15.6■□□□□ 0.09
LRTOMT-217ENST00000539587 CC2D2AQ9P2K1 1620 aa15.58■□□□□ 0.09
LRTOMT-217ENST00000539587 CECR2Q9BXF3 1484 aa15.57■□□□□ 0.08
LRTOMT-217ENST00000539587 DCAF1Q9Y4B6 1507 aa15.53■□□□□ 0.08
LRTOMT-217ENST00000539587 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
LRTOMT-217ENST00000539587 EIF4G1Q04637 1599 aaKnown RBP15.48■□□□□ 0.07
LRTOMT-217ENST00000539587 DNAJC5Q9H3Z4 198 aa15.42■□□□□ 0.06
LRTOMT-217ENST00000539587 SCRIBQ14160 1630 aa15.38■□□□□ 0.05
LRTOMT-217ENST00000539587 CUX2O14529 1486 aa15□□□□□ -0.01
LRTOMT-217ENST00000539587 NCAPD3P42695 1498 aa14.94□□□□□ -0.02
LRTOMT-217ENST00000539587 ERCC6Q03468 1493 aa14.82□□□□□ -0.04
LRTOMT-217ENST00000539587 ATAD2BQ9ULI0 1458 aa14.82□□□□□ -0.04
LRTOMT-217ENST00000539587 NESP48681 1621 aa14.75□□□□□ -0.05
LRTOMT-217ENST00000539587 HMGXB3Q12766 1538 aa14.74□□□□□ -0.05
LRTOMT-217ENST00000539587 SMARCA2P51531 1590 aa14.71□□□□□ -0.05
LRTOMT-217ENST00000539587 SMARCA4P51532 1647 aa14.7□□□□□ -0.06
LRTOMT-217ENST00000539587 THOC2Q8NI27 1593 aaKnown RBP14.67□□□□□ -0.06
LRTOMT-217ENST00000539587 PEG3Q9GZU2 1588 aa14.61□□□□□ -0.07
LRTOMT-217ENST00000539587 LAMC3Q9Y6N6 1575 aa14.59□□□□□ -0.07
LRTOMT-217ENST00000539587 BAZ1BQ9UIG0 1483 aaKnown RBP14.57□□□□□ -0.08
LRTOMT-217ENST00000539587 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
LRTOMT-217ENST00000539587 KIF21AQ7Z4S6 1674 aa14.55□□□□□ -0.08
LRTOMT-217ENST00000539587 PDS5BQ9NTI5 1447 aa14.49□□□□□ -0.09
LRTOMT-217ENST00000539587 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
LRTOMT-217ENST00000539587 TRIM41Q8WV44 630 aa14.46□□□□□ -0.09
LRTOMT-217ENST00000539587 CADPSQ9ULU8 1353 aa14.43□□□□□ -0.1
LRTOMT-217ENST00000539587 WDR62O43379 1518 aa14.39□□□□□ -0.11
LRTOMT-217ENST00000539587 MRC2Q9UBG0 1479 aa14.38□□□□□ -0.11
LRTOMT-217ENST00000539587 OSCARQ8IYS5 282 aa14.27□□□□□ -0.13
LRTOMT-217ENST00000539587 WIZO95785 1651 aa14.26□□□□□ -0.13
LRTOMT-217ENST00000539587 CEP164Q9UPV0 1460 aa14.24□□□□□ -0.13
LRTOMT-217ENST00000539587 FANCD2Q9BXW9 1451 aa14.23□□□□□ -0.13
LRTOMT-217ENST00000539587 CFTRP13569 1480 aa14.21□□□□□ -0.13
LRTOMT-217ENST00000539587 URB2Q14146 1524 aaKnown RBP14.17□□□□□ -0.14
LRTOMT-217ENST00000539587 RIMBP3CA6NJZ7 1639 aa14.12□□□□□ -0.15
LRTOMT-217ENST00000539587 RIMBP3BA6NNM3 1639 aa14.12□□□□□ -0.15
LRTOMT-217ENST00000539587 RIMBP3Q9UFD9 1639 aa14.12□□□□□ -0.15
LRTOMT-217ENST00000539587 RSF1Q96T23 1441 aaPredicted RBP14.07□□□□□ -0.16
LRTOMT-217ENST00000539587 TOP2AP11388 1531 aaKnown RBP14.04□□□□□ -0.16
LRTOMT-217ENST00000539587 ZNF608Q9ULD9 1512 aaPredicted RBP14.04□□□□□ -0.16
LRTOMT-217ENST00000539587 ARHGEF11O15085 1522 aa14.03□□□□□ -0.16
LRTOMT-217ENST00000539587 PRDM2Q13029 1718 aa14.01□□□□□ -0.17
LRTOMT-217ENST00000539587 IFT140Q96RY7 1462 aa14□□□□□ -0.17
LRTOMT-217ENST00000539587 TOPBP1Q92547 1522 aa13.94□□□□□ -0.18
LRTOMT-217ENST00000539587 CYB5RLQ6IPT4 315 aa13.93□□□□□ -0.18
LRTOMT-217ENST00000539587 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
LRTOMT-217ENST00000539587 EIF4G3O43432 1585 aaKnown RBP13.89□□□□□ -0.19
LRTOMT-217ENST00000539587 TARBP1Q13395 1621 aaKnown RBP13.89□□□□□ -0.19
LRTOMT-217ENST00000539587 ABCC8Q09428 1581 aa13.88□□□□□ -0.19
LRTOMT-217ENST00000539587 ARAP1Q96P48 1450 aa13.88□□□□□ -0.19
LRTOMT-217ENST00000539587 CHD1O14646 1710 aa13.87□□□□□ -0.19
LRTOMT-217ENST00000539587 AQRO60306 1485 aaKnown RBP eCLIP13.87□□□□□ -0.19
LRTOMT-217ENST00000539587 DNMBPQ6XZF7 1577 aa13.84□□□□□ -0.19
LRTOMT-217ENST00000539587 TRHP20396 242 aaPredicted RBP13.8□□□□□ -0.2
LRTOMT-217ENST00000539587 POLA1P09884 1462 aaPredicted RBP13.78□□□□□ -0.2
LRTOMT-217ENST00000539587 CLASP1Q7Z460 1538 aa13.74□□□□□ -0.21
LRTOMT-217ENST00000539587 RAD54L2Q9Y4B4 1467 aa13.74□□□□□ -0.21
LRTOMT-217ENST00000539587 FBLN2P98095 1184 aa13.73□□□□□ -0.21
LRTOMT-217ENST00000539587 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.21
LRTOMT-217ENST00000539587 SOGA1O94964 1423 aa13.7□□□□□ -0.22
LRTOMT-217ENST00000539587 WDR97A6NE52 1622 aa13.68□□□□□ -0.22
LRTOMT-217ENST00000539587 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
LRTOMT-217ENST00000539587 MAGI1Q96QZ7 1491 aaPredicted RBP13.64□□□□□ -0.23
LRTOMT-217ENST00000539587 SYNJ1O43426 1573 aa13.63□□□□□ -0.23
LRTOMT-217ENST00000539587 FGD5Q6ZNL6 1462 aa13.62□□□□□ -0.23
LRTOMT-217ENST00000539587 CHMP7Q8WUX9 453 aaPredicted RBP13.62□□□□□ -0.23
LRTOMT-217ENST00000539587 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
LRTOMT-217ENST00000539587 CUX1P39880 1505 aa13.6□□□□□ -0.23
LRTOMT-217ENST00000539587 SYNJ2O15056 1496 aa13.6□□□□□ -0.23
LRTOMT-217ENST00000539587 AEBP2Q6ZN18 517 aaPredicted RBP13.59□□□□□ -0.23
LRTOMT-217ENST00000539587 GAPVD1Q14C86 1478 aa13.58□□□□□ -0.24
LRTOMT-217ENST00000539587 PBRM1Q86U86 1689 aa13.53□□□□□ -0.24
LRTOMT-217ENST00000539587 ERCC6L2Q5T890 1561 aa13.5□□□□□ -0.25
LRTOMT-217ENST00000539587 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
LRTOMT-217ENST00000539587 ABCA5Q8WWZ7 1642 aa13.49□□□□□ -0.25
LRTOMT-217ENST00000539587 NUP160Q12769 1436 aa13.45□□□□□ -0.26
LRTOMT-217ENST00000539587 KIF13AQ9H1H9 1805 aa13.43□□□□□ -0.26
LRTOMT-217ENST00000539587 GRIN2AQ12879 1464 aa13.43□□□□□ -0.26
LRTOMT-217ENST00000539587 SHROOM2Q13796 1616 aa13.43□□□□□ -0.26
LRTOMT-217ENST00000539587 CEP170Q5SW79 1584 aa13.43□□□□□ -0.26
LRTOMT-217ENST00000539587 ADAMTS12P58397 1594 aa13.38□□□□□ -0.27
LRTOMT-217ENST00000539587 FHAD1B1AJZ9 1412 aa13.34□□□□□ -0.27
LRTOMT-217ENST00000539587 WRNQ14191 1432 aaPredicted RBP eCLIP13.33□□□□□ -0.28
LRTOMT-217ENST00000539587 ERICH3Q5RHP9 1530 aa13.3□□□□□ -0.28
LRTOMT-217ENST00000539587 BIVM-ERCC5R4GMW8 1640 aa13.3□□□□□ -0.28
LRTOMT-217ENST00000539587 PRG4Q92954 1404 aaPredicted RBP13.3□□□□□ -0.28
LRTOMT-217ENST00000539587 TOP2BQ02880 1626 aa13.29□□□□□ -0.28
LRTOMT-217ENST00000539587 JPH4Q96JJ6 628 aa13.29□□□□□ -0.28
LRTOMT-217ENST00000539587 ABCC10Q5T3U5 1492 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms