RNA–Protein interactions for RNA: ENST00000539416.5

NEK6-212, Transcript of NIMA related kinase 6, humanhuman

TSL 2 BASIC

Gene NEK6, Length 2,582 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK6-212ENST00000539416 NISCHQ9Y2I1 1504 aa25.24■■□□□ 1.63
NEK6-212ENST00000539416 CCDC180Q9P1Z9 1646 aa22.17■■□□□ 1.14
NEK6-212ENST00000539416 ZCCHC6Q5VYS8 1495 aaKnown RBP21.15■□□□□ 0.98
NEK6-212ENST00000539416 ABCC9O60706 1549 aa21.04■□□□□ 0.96
NEK6-212ENST00000539416 DCAF1Q9Y4B6 1507 aa20.94■□□□□ 0.94
NEK6-212ENST00000539416 MYO15BQ96JP2 1530 aa20.8■□□□□ 0.92
NEK6-212ENST00000539416 DCAF8L2P0C7V8 631 aa20.76■□□□□ 0.91
NEK6-212ENST00000539416 NACADO15069 1562 aa20.69■□□□□ 0.9
NEK6-212ENST00000539416 RB1CC1Q8TDY2 1594 aa20.54■□□□□ 0.88
NEK6-212ENST00000539416 SHROOM4Q9ULL8 1493 aa20.27■□□□□ 0.83
NEK6-212ENST00000539416 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
NEK6-212ENST00000539416 HRCP23327 699 aa20.21■□□□□ 0.83
NEK6-212ENST00000539416 UNC13AQ9UPW8 1703 aa20.1■□□□□ 0.81
NEK6-212ENST00000539416 BICRAQ9NZM4 1560 aa19.92■□□□□ 0.78
NEK6-212ENST00000539416 PPARGC1BQ86YN6 1023 aaKnown RBP19.87■□□□□ 0.77
NEK6-212ENST00000539416 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.75
NEK6-212ENST00000539416 PCGF6Q9BYE7 350 aa19.71■□□□□ 0.75
NEK6-212ENST00000539416 PELP1Q8IZL8 1130 aaKnown RBP19.7■□□□□ 0.74
NEK6-212ENST00000539416 CECR2Q9BXF3 1484 aa19.58■□□□□ 0.73
NEK6-212ENST00000539416 SUPT5HO00267 1087 aaKnown RBP19.56■□□□□ 0.72
NEK6-212ENST00000539416 BAZ1AQ9NRL2 1556 aaPredicted RBP19.51■□□□□ 0.71
NEK6-212ENST00000539416 RSF1Q96T23 1441 aaPredicted RBP19.47■□□□□ 0.71
NEK6-212ENST00000539416 MROH2BQ7Z745 1585 aa19.46■□□□□ 0.71
NEK6-212ENST00000539416 SMARCA4P51532 1647 aa19.44■□□□□ 0.7
NEK6-212ENST00000539416 CHIC1Q5VXU3 224 aa19.33■□□□□ 0.68
NEK6-212ENST00000539416 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
NEK6-212ENST00000539416 SCAF1Q9H7N4 1312 aaKnown RBP19.29■□□□□ 0.68
NEK6-212ENST00000539416 WIZO95785 1651 aa19.28■□□□□ 0.68
NEK6-212ENST00000539416 PEG3Q9GZU2 1588 aa19.26■□□□□ 0.67
NEK6-212ENST00000539416 SMARCA2P51531 1590 aa19.18■□□□□ 0.66
NEK6-212ENST00000539416 ATAD2BQ9ULI0 1458 aa19.18■□□□□ 0.66
NEK6-212ENST00000539416 TOP2AP11388 1531 aaKnown RBP19.12■□□□□ 0.65
NEK6-212ENST00000539416 NCAPD3P42695 1498 aa19.08■□□□□ 0.65
NEK6-212ENST00000539416 CC2D2AQ9P2K1 1620 aa19.08■□□□□ 0.64
NEK6-212ENST00000539416 HMGXB3Q12766 1538 aa19.04■□□□□ 0.64
NEK6-212ENST00000539416 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
NEK6-212ENST00000539416 TRIM26Q12899 539 aaPredicted RBP18.97■□□□□ 0.63
NEK6-212ENST00000539416 LOC105371045A0A1W2PR82 267 aa18.95■□□□□ 0.62
NEK6-212ENST00000539416 MYT1Q01538 1121 aa18.95■□□□□ 0.62
NEK6-212ENST00000539416 CCDC88BA6NC98 1476 aa18.9■□□□□ 0.62
NEK6-212ENST00000539416 ZEB1P37275 1124 aaPredicted RBP18.83■□□□□ 0.6
NEK6-212ENST00000539416 DNAJC5BQ9UF47 199 aa18.76■□□□□ 0.59
NEK6-212ENST00000539416 ACIN1Q9UKV3 1341 aaKnown RBP18.7■□□□□ 0.58
NEK6-212ENST00000539416 NEUROD1Q13562 356 aa18.68■□□□□ 0.58
NEK6-212ENST00000539416 GTF3C3Q9Y5Q9 886 aa18.58■□□□□ 0.56
NEK6-212ENST00000539416 CFTRP13569 1480 aa18.58■□□□□ 0.56
NEK6-212ENST00000539416 CADPSQ9ULU8 1353 aa18.55■□□□□ 0.56
NEK6-212ENST00000539416 PRDM2Q13029 1718 aa18.5■□□□□ 0.55
NEK6-212ENST00000539416 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
NEK6-212ENST00000539416 NESP48681 1621 aa18.4■□□□□ 0.54
NEK6-212ENST00000539416 ABCC8Q09428 1581 aa18.36■□□□□ 0.53
NEK6-212ENST00000539416 CENPBP07199 599 aaPredicted RBP18.36■□□□□ 0.53
NEK6-212ENST00000539416 FANCD2Q9BXW9 1451 aa18.32■□□□□ 0.52
NEK6-212ENST00000539416 WRNQ14191 1432 aaPredicted RBP eCLIP18.32■□□□□ 0.52
NEK6-212ENST00000539416 TRIM41Q8WV44 630 aa18.32■□□□□ 0.52
NEK6-212ENST00000539416 PDS5BQ9NTI5 1447 aa18.31■□□□□ 0.52
NEK6-212ENST00000539416 DIEXFQ68CQ4 756 aaKnown RBP18.26■□□□□ 0.51
NEK6-212ENST00000539416 SYNJ1O43426 1573 aa18.25■□□□□ 0.51
NEK6-212ENST00000539416 BIVM-ERCC5R4GMW8 1640 aa18.24■□□□□ 0.51
NEK6-212ENST00000539416 CEP164Q9UPV0 1460 aa18.23■□□□□ 0.51
NEK6-212ENST00000539416 TOP2BQ02880 1626 aa18.23■□□□□ 0.51
NEK6-212ENST00000539416 CUX1P39880 1505 aa18.21■□□□□ 0.51
NEK6-212ENST00000539416 KIF21AQ7Z4S6 1674 aa18.21■□□□□ 0.51
NEK6-212ENST00000539416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.21■□□□□ 0.51
NEK6-212ENST00000539416 DNMBPQ6XZF7 1577 aa18.15■□□□□ 0.5
NEK6-212ENST00000539416 CCER1Q8TC90 406 aaPredicted RBP18.12■□□□□ 0.49
NEK6-212ENST00000539416 URB2Q14146 1524 aaKnown RBP18.11■□□□□ 0.49
NEK6-212ENST00000539416 TOPBP1Q92547 1522 aa18.11■□□□□ 0.49
NEK6-212ENST00000539416 FAM9AQ8IZU1 332 aaPredicted RBP18.11■□□□□ 0.49
NEK6-212ENST00000539416 MRC2Q9UBG0 1479 aa18.09■□□□□ 0.49
NEK6-212ENST00000539416 EHMT2Q96KQ7 1210 aa18.07■□□□□ 0.48
NEK6-212ENST00000539416 ERCC6Q03468 1493 aa18.07■□□□□ 0.48
NEK6-212ENST00000539416 FGD5Q6ZNL6 1462 aa18.04■□□□□ 0.48
NEK6-212ENST00000539416 YTHDC1Q96MU7 727 aaKnown RBP18.02■□□□□ 0.47
NEK6-212ENST00000539416 WDR62O43379 1518 aa18.02■□□□□ 0.47
NEK6-212ENST00000539416 THOC2Q8NI27 1593 aaKnown RBP18■□□□□ 0.47
NEK6-212ENST00000539416 EEA1Q15075 1411 aa17.99■□□□□ 0.47
NEK6-212ENST00000539416 POLA1P09884 1462 aaPredicted RBP17.99■□□□□ 0.47
NEK6-212ENST00000539416 SOGA1O94964 1423 aa17.99■□□□□ 0.47
NEK6-212ENST00000539416 RUSC2Q8N2Y8 1516 aa17.93■□□□□ 0.46
NEK6-212ENST00000539416 ABCA10Q8WWZ4 1543 aa17.92■□□□□ 0.46
NEK6-212ENST00000539416 RAD54L2Q9Y4B4 1467 aa17.91■□□□□ 0.46
NEK6-212ENST00000539416 KIF27Q86VH2 1401 aa17.89■□□□□ 0.45
NEK6-212ENST00000539416 WDR97A6NE52 1622 aa17.89■□□□□ 0.45
NEK6-212ENST00000539416 TARBP1Q13395 1621 aaKnown RBP17.88■□□□□ 0.45
NEK6-212ENST00000539416 CUX2O14529 1486 aa17.88■□□□□ 0.45
NEK6-212ENST00000539416 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
NEK6-212ENST00000539416 BCL11AQ9H165 835 aa17.86■□□□□ 0.45
NEK6-212ENST00000539416 IFT140Q96RY7 1462 aa17.85■□□□□ 0.45
NEK6-212ENST00000539416 ZNF316A6NFI3 1004 aaPredicted RBP17.85■□□□□ 0.45
NEK6-212ENST00000539416 MIER1Q8N108 512 aa17.81■□□□□ 0.44
NEK6-212ENST00000539416 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
NEK6-212ENST00000539416 ABCA5Q8WWZ7 1642 aa17.78■□□□□ 0.44
NEK6-212ENST00000539416 IGF1RP08069 1367 aa17.76■□□□□ 0.43
NEK6-212ENST00000539416 KIF21BO75037 1637 aa17.75■□□□□ 0.43
NEK6-212ENST00000539416 TDRD9Q8NDG6 1382 aaKnown RBP17.74■□□□□ 0.43
NEK6-212ENST00000539416 GAPVD1Q14C86 1478 aa17.74■□□□□ 0.43
NEK6-212ENST00000539416 PRXQ9BXM0 1461 aa17.73■□□□□ 0.43
NEK6-212ENST00000539416 ANP32EQ9BTT0 268 aa17.73■□□□□ 0.43
NEK6-212ENST00000539416 ERICH3Q5RHP9 1530 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms