RNA–Protein interactions for RNA: ENST00000538923.1

MRE11-208, Transcript of MRE11 homolog, double strand break repair nuclease, humanhuman

TSL 5

Gene MRE11, Length 558 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11-208ENST00000538923 AEBP2Q6ZN18 517 aaPredicted RBP27.09■■□□□ 1.93
MRE11-208ENST00000538923 CHIC1Q5VXU3 224 aa26.48■■□□□ 1.83
MRE11-208ENST00000538923 PHF23Q9BUL5 403 aaPredicted RBP23.26■■□□□ 1.31
MRE11-208ENST00000538923 SENP3Q9H4L4 574 aaPredicted RBP23.04■■□□□ 1.28
MRE11-208ENST00000538923 NISCHQ9Y2I1 1504 aa22.36■■□□□ 1.17
MRE11-208ENST00000538923 PLPPR3Q6T4P5 718 aa21.53■■□□□ 1.04
MRE11-208ENST00000538923 FOXD1Q16676 465 aa21.35■■□□□ 1.01
MRE11-208ENST00000538923 ADRA2BP18089 450 aa20.55■□□□□ 0.88
MRE11-208ENST00000538923 PPP6R1Q9UPN7 881 aa20.53■□□□□ 0.88
MRE11-208ENST00000538923 ABCC9O60706 1549 aa20.21■□□□□ 0.83
MRE11-208ENST00000538923 PIAS4Q8N2W9 510 aaPredicted RBP20.19■□□□□ 0.82
MRE11-208ENST00000538923 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
MRE11-208ENST00000538923 MSH5O43196 834 aa19.73■□□□□ 0.75
MRE11-208ENST00000538923 RB1CC1Q8TDY2 1594 aa19.2■□□□□ 0.66
MRE11-208ENST00000538923 NACADO15069 1562 aa19.05■□□□□ 0.64
MRE11-208ENST00000538923 DNAJC5BQ9UF47 199 aa19.04■□□□□ 0.64
MRE11-208ENST00000538923 PPP4R3CPQ6ZMV5 832 aa18.96■□□□□ 0.63
MRE11-208ENST00000538923 DCAF8L2P0C7V8 631 aa18.93■□□□□ 0.62
MRE11-208ENST00000538923 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.61
MRE11-208ENST00000538923 PABPN1Q86U42 306 aaKnown RBP eCLIP18.81■□□□□ 0.6
MRE11-208ENST00000538923 MYO15BQ96JP2 1530 aa18.78■□□□□ 0.6
MRE11-208ENST00000538923 MAPK8IP2Q13387 824 aaPredicted RBP18.63■□□□□ 0.57
MRE11-208ENST00000538923 UNC13AQ9UPW8 1703 aa18.63■□□□□ 0.57
MRE11-208ENST00000538923 BICRAQ9NZM4 1560 aa18.6■□□□□ 0.57
MRE11-208ENST00000538923 POTEDQ86YR6 584 aa18.55■□□□□ 0.56
MRE11-208ENST00000538923 KCNA4P22459 653 aa18.52■□□□□ 0.56
MRE11-208ENST00000538923 ZCCHC6Q5VYS8 1495 aaKnown RBP18.51■□□□□ 0.55
MRE11-208ENST00000538923 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
MRE11-208ENST00000538923 DCAF1Q9Y4B6 1507 aa18.49■□□□□ 0.55
MRE11-208ENST00000538923 SHROOM4Q9ULL8 1493 aa18.44■□□□□ 0.54
MRE11-208ENST00000538923 CNKSR2Q8WXI2 1034 aa18.43■□□□□ 0.54
MRE11-208ENST00000538923 DMRT2Q9Y5R5 561 aa18.37■□□□□ 0.53
MRE11-208ENST00000538923 SCRIBQ14160 1630 aa18.29■□□□□ 0.52
MRE11-208ENST00000538923 CECR2Q9BXF3 1484 aa18.24■□□□□ 0.51
MRE11-208ENST00000538923 CC2D2AQ9P2K1 1620 aa18.23■□□□□ 0.51
MRE11-208ENST00000538923 NPM3O75607 178 aaKnown RBP18.19■□□□□ 0.5
MRE11-208ENST00000538923 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
MRE11-208ENST00000538923 RNF216Q9NWF9 866 aaPredicted RBP18.06■□□□□ 0.48
MRE11-208ENST00000538923 HOXD11P31277 338 aaPredicted RBP17.97■□□□□ 0.47
MRE11-208ENST00000538923 DCAF8L1A6NGE4 600 aa17.67■□□□□ 0.42
MRE11-208ENST00000538923 SLC4A1APQ9BWU0 796 aaKnown RBP17.66■□□□□ 0.42
MRE11-208ENST00000538923 DNAJC5Q9H3Z4 198 aa17.62■□□□□ 0.41
MRE11-208ENST00000538923 NCAPD3P42695 1498 aa17.6■□□□□ 0.41
MRE11-208ENST00000538923 ATAD2BQ9ULI0 1458 aa17.51■□□□□ 0.39
MRE11-208ENST00000538923 CUX2O14529 1486 aa17.5■□□□□ 0.39
MRE11-208ENST00000538923 ERCC6Q03468 1493 aa17.5■□□□□ 0.39
MRE11-208ENST00000538923 SMARCA2P51531 1590 aa17.47■□□□□ 0.39
MRE11-208ENST00000538923 HMGXB3Q12766 1538 aa17.45■□□□□ 0.38
MRE11-208ENST00000538923 SMARCA4P51532 1647 aa17.43■□□□□ 0.38
MRE11-208ENST00000538923 BAZ1AQ9NRL2 1556 aaPredicted RBP17.37■□□□□ 0.37
MRE11-208ENST00000538923 BAZ1BQ9UIG0 1483 aaKnown RBP17.35■□□□□ 0.37
MRE11-208ENST00000538923 NESP48681 1621 aa17.32■□□□□ 0.36
MRE11-208ENST00000538923 PEG3Q9GZU2 1588 aa17.29■□□□□ 0.36
MRE11-208ENST00000538923 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
MRE11-208ENST00000538923 LAMC3Q9Y6N6 1575 aa17.2■□□□□ 0.34
MRE11-208ENST00000538923 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.2■□□□□ 0.34
MRE11-208ENST00000538923 EHMT2Q96KQ7 1210 aa17.19■□□□□ 0.34
MRE11-208ENST00000538923 THOC2Q8NI27 1593 aaKnown RBP17.15■□□□□ 0.34
MRE11-208ENST00000538923 PDS5BQ9NTI5 1447 aa17.15■□□□□ 0.34
MRE11-208ENST00000538923 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
MRE11-208ENST00000538923 CADPSQ9ULU8 1353 aa17.07■□□□□ 0.32
MRE11-208ENST00000538923 FOXD4L1Q9NU39 408 aa17.06■□□□□ 0.32
MRE11-208ENST00000538923 KIF21AQ7Z4S6 1674 aa17.03■□□□□ 0.32
MRE11-208ENST00000538923 ZBTB22O15209 634 aa17.01■□□□□ 0.31
MRE11-208ENST00000538923 MRC2Q9UBG0 1479 aa16.98■□□□□ 0.31
MRE11-208ENST00000538923 WIZO95785 1651 aa16.96■□□□□ 0.31
MRE11-208ENST00000538923 WDR62O43379 1518 aa16.93■□□□□ 0.3
MRE11-208ENST00000538923 CSRNP3Q8WYN3 585 aa16.92■□□□□ 0.3
MRE11-208ENST00000538923 CEP164Q9UPV0 1460 aa16.89■□□□□ 0.29
MRE11-208ENST00000538923 RNF39Q9H2S5 420 aa16.87■□□□□ 0.29
MRE11-208ENST00000538923 U3KPZ7 1027 aaPredicted RBP16.87■□□□□ 0.29
MRE11-208ENST00000538923 FANCD2Q9BXW9 1451 aa16.86■□□□□ 0.29
MRE11-208ENST00000538923 CFTRP13569 1480 aa16.85■□□□□ 0.29
MRE11-208ENST00000538923 RSF1Q96T23 1441 aaPredicted RBP16.84■□□□□ 0.29
MRE11-208ENST00000538923 MYCNP04198 464 aaPredicted RBP16.83■□□□□ 0.28
MRE11-208ENST00000538923 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
MRE11-208ENST00000538923 TRIM41Q8WV44 630 aa16.78■□□□□ 0.28
MRE11-208ENST00000538923 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
MRE11-208ENST00000538923 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
MRE11-208ENST00000538923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.69■□□□□ 0.26
MRE11-208ENST00000538923 C1QBPQ07021 282 aaKnown RBP16.69■□□□□ 0.26
MRE11-208ENST00000538923 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
MRE11-208ENST00000538923 SAMD1Q6SPF0 538 aaPredicted RBP16.63■□□□□ 0.25
MRE11-208ENST00000538923 CCDC88BA6NC98 1476 aa16.6■□□□□ 0.25
MRE11-208ENST00000538923 IFT140Q96RY7 1462 aa16.56■□□□□ 0.24
MRE11-208ENST00000538923 APLP2Q06481 763 aa16.54■□□□□ 0.24
MRE11-208ENST00000538923 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
MRE11-208ENST00000538923 TOPBP1Q92547 1522 aa16.51■□□□□ 0.23
MRE11-208ENST00000538923 ZNF608Q9ULD9 1512 aaPredicted RBP16.51■□□□□ 0.23
MRE11-208ENST00000538923 CACNB1Q02641 598 aaPredicted RBP16.51■□□□□ 0.23
MRE11-208ENST00000538923 ABCC8Q09428 1581 aa16.51■□□□□ 0.23
MRE11-208ENST00000538923 DNMBPQ6XZF7 1577 aa16.44■□□□□ 0.22
MRE11-208ENST00000538923 ATXN8OSP0DMR3 200 aa16.44■□□□□ 0.22
MRE11-208ENST00000538923 RIMBP3CA6NJZ7 1639 aa16.42■□□□□ 0.22
MRE11-208ENST00000538923 RIMBP3BA6NNM3 1639 aa16.42■□□□□ 0.22
MRE11-208ENST00000538923 RIMBP3Q9UFD9 1639 aa16.42■□□□□ 0.22
MRE11-208ENST00000538923 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
MRE11-208ENST00000538923 EIF4G3O43432 1585 aaKnown RBP16.41■□□□□ 0.22
MRE11-208ENST00000538923 CAPN15O75808 1086 aa16.4■□□□□ 0.22
MRE11-208ENST00000538923 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms