RNA–Protein interactions for RNA: ENST00000538573.1

LINC02408-202, Transcript of long intergenic non-protein coding RNA 2408, humanhuman

TSL 4 BASIC

Gene LINC02408, Length 559 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02408-202ENST00000538573 AEBP2Q6ZN18 517 aaPredicted RBP17.34■□□□□ 0.37
LINC02408-202ENST00000538573 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
LINC02408-202ENST00000538573 SENP3Q9H4L4 574 aaPredicted RBP15.04■□□□□ -0
LINC02408-202ENST00000538573 PHF23Q9BUL5 403 aaPredicted RBP14.72□□□□□ -0.05
LINC02408-202ENST00000538573 FOXD1Q16676 465 aa13.97□□□□□ -0.17
LINC02408-202ENST00000538573 POTEDQ86YR6 584 aa13.76□□□□□ -0.21
LINC02408-202ENST00000538573 MSH5O43196 834 aa13.39□□□□□ -0.27
LINC02408-202ENST00000538573 PLPPR3Q6T4P5 718 aa13.21□□□□□ -0.29
LINC02408-202ENST00000538573 PIAS4Q8N2W9 510 aaPredicted RBP13.04□□□□□ -0.32
LINC02408-202ENST00000538573 ADRA2BP18089 450 aa12.86□□□□□ -0.35
LINC02408-202ENST00000538573 PPP6R1Q9UPN7 881 aa12.85□□□□□ -0.35
LINC02408-202ENST00000538573 NISCHQ9Y2I1 1504 aa11.96□□□□□ -0.5
LINC02408-202ENST00000538573 SCAF1Q9H7N4 1312 aaKnown RBP11.87□□□□□ -0.51
LINC02408-202ENST00000538573 MAPK8IP2Q13387 824 aaPredicted RBP11.8□□□□□ -0.52
LINC02408-202ENST00000538573 DMRT2Q9Y5R5 561 aa11.8□□□□□ -0.52
LINC02408-202ENST00000538573 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
LINC02408-202ENST00000538573 PPP4R3CPQ6ZMV5 832 aa11.57□□□□□ -0.56
LINC02408-202ENST00000538573 DCAF8L1A6NGE4 600 aa11.47□□□□□ -0.57
LINC02408-202ENST00000538573 CNKSR2Q8WXI2 1034 aa11.36□□□□□ -0.59
LINC02408-202ENST00000538573 RNF39Q9H2S5 420 aa11.28□□□□□ -0.6
LINC02408-202ENST00000538573 HOXD11P31277 338 aaPredicted RBP11.27□□□□□ -0.61
LINC02408-202ENST00000538573 RNF216Q9NWF9 866 aaPredicted RBP11.23□□□□□ -0.61
LINC02408-202ENST00000538573 NCBP3Q53F19 620 aaKnown RBP11.2□□□□□ -0.62
LINC02408-202ENST00000538573 C1QBPQ07021 282 aaKnown RBP11.17□□□□□ -0.62
LINC02408-202ENST00000538573 DNAJC5BQ9UF47 199 aa10.98□□□□□ -0.65
LINC02408-202ENST00000538573 NPM3O75607 178 aaKnown RBP10.92□□□□□ -0.66
LINC02408-202ENST00000538573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.87□□□□□ -0.67
LINC02408-202ENST00000538573 POTEHQ6S545 545 aa10.74□□□□□ -0.69
LINC02408-202ENST00000538573 KCNA4P22459 653 aa10.71□□□□□ -0.69
LINC02408-202ENST00000538573 U3KPZ7 1027 aaPredicted RBP10.51□□□□□ -0.73
LINC02408-202ENST00000538573 CCDC180Q9P1Z9 1646 aa10.5□□□□□ -0.73
LINC02408-202ENST00000538573 CAPN15O75808 1086 aa10.47□□□□□ -0.73
LINC02408-202ENST00000538573 DSG3P32926 999 aa10.41□□□□□ -0.74
LINC02408-202ENST00000538573 SLC4A2P04920 1241 aa10.39□□□□□ -0.75
LINC02408-202ENST00000538573 APLP2Q06481 763 aa10.38□□□□□ -0.75
LINC02408-202ENST00000538573 SPINK5Q9NQ38 1064 aaPredicted RBP10.38□□□□□ -0.75
LINC02408-202ENST00000538573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.34□□□□□ -0.75
LINC02408-202ENST00000538573 HNRNPUL2Q1KMD3 747 aaKnown RBP10.34□□□□□ -0.75
LINC02408-202ENST00000538573 TRHP20396 242 aaPredicted RBP10.29□□□□□ -0.76
LINC02408-202ENST00000538573 SAMD1Q6SPF0 538 aaPredicted RBP10.26□□□□□ -0.77
LINC02408-202ENST00000538573 ZNF219Q9P2Y4 722 aaPredicted RBP10.25□□□□□ -0.77
LINC02408-202ENST00000538573 ABCB7O75027 752 aa10.18□□□□□ -0.78
LINC02408-202ENST00000538573 SLC4A1APQ9BWU0 796 aaKnown RBP10.18□□□□□ -0.78
LINC02408-202ENST00000538573 MYCNP04198 464 aaPredicted RBP10.15□□□□□ -0.78
LINC02408-202ENST00000538573 ABCC9O60706 1549 aa10.09□□□□□ -0.79
LINC02408-202ENST00000538573 RBM42Q9BTD8 480 aaKnown RBP10.09□□□□□ -0.79
LINC02408-202ENST00000538573 FOXD4L1Q9NU39 408 aa10.04□□□□□ -0.8
LINC02408-202ENST00000538573 DCAF8L2P0C7V8 631 aa10.01□□□□□ -0.81
LINC02408-202ENST00000538573 ZCCHC6Q5VYS8 1495 aaKnown RBP9.99□□□□□ -0.81
LINC02408-202ENST00000538573 POLA2Q14181 598 aa9.99□□□□□ -0.81
LINC02408-202ENST00000538573 CHRDL2Q6WN34 429 aa9.97□□□□□ -0.81
LINC02408-202ENST00000538573 DCAF1Q9Y4B6 1507 aa9.87□□□□□ -0.83
LINC02408-202ENST00000538573 SP7Q8TDD2 431 aaPredicted RBP9.85□□□□□ -0.83
LINC02408-202ENST00000538573 ATF5Q9Y2D1 282 aaPredicted RBP9.84□□□□□ -0.83
LINC02408-202ENST00000538573 NACADO15069 1562 aa9.82□□□□□ -0.84
LINC02408-202ENST00000538573 ZBTB12Q9Y330 459 aaPredicted RBP9.81□□□□□ -0.84
LINC02408-202ENST00000538573 MYO15BQ96JP2 1530 aa9.81□□□□□ -0.84
LINC02408-202ENST00000538573 RB1CC1Q8TDY2 1594 aa9.79□□□□□ -0.84
LINC02408-202ENST00000538573 ZBTB22O15209 634 aa9.78□□□□□ -0.84
LINC02408-202ENST00000538573 ATXN8OSP0DMR3 200 aa9.73□□□□□ -0.85
LINC02408-202ENST00000538573 AKT1S1Q96B36 256 aa9.7□□□□□ -0.86
LINC02408-202ENST00000538573 SHROOM4Q9ULL8 1493 aa9.69□□□□□ -0.86
LINC02408-202ENST00000538573 SCRIBQ14160 1630 aa9.65□□□□□ -0.86
LINC02408-202ENST00000538573 HAX1O00165 279 aa9.64□□□□□ -0.87
LINC02408-202ENST00000538573 OSCARQ8IYS5 282 aa9.63□□□□□ -0.87
LINC02408-202ENST00000538573 FBLN2P98095 1184 aa9.6□□□□□ -0.87
LINC02408-202ENST00000538573 PIP4P2Q8N4L2 257 aa9.6□□□□□ -0.87
LINC02408-202ENST00000538573 UNC13AQ9UPW8 1703 aa9.59□□□□□ -0.87
LINC02408-202ENST00000538573 REM2Q8IYK8 340 aaPredicted RBP9.56□□□□□ -0.88
LINC02408-202ENST00000538573 PABPN1Q86U42 306 aaKnown RBP eCLIP9.5□□□□□ -0.89
LINC02408-202ENST00000538573 SPDYE2BA6NHP3 402 aa9.48□□□□□ -0.89
LINC02408-202ENST00000538573 SPDYE6P0CI01 402 aa9.48□□□□□ -0.89
LINC02408-202ENST00000538573 SPDYE2Q495Y8 402 aa9.48□□□□□ -0.89
LINC02408-202ENST00000538573 BICRAQ9NZM4 1560 aa9.46□□□□□ -0.89
LINC02408-202ENST00000538573 FXR2P51116 673 aaKnown RBP eCLIP9.46□□□□□ -0.9
LINC02408-202ENST00000538573 PITPNM1O00562 1244 aa9.45□□□□□ -0.9
LINC02408-202ENST00000538573 ZNF692Q9BU19 519 aaPredicted RBP9.41□□□□□ -0.9
LINC02408-202ENST00000538573 CSRNP3Q8WYN3 585 aa9.4□□□□□ -0.9
LINC02408-202ENST00000538573 MKRN4PQ13434 485 aaPredicted RBP9.37□□□□□ -0.91
LINC02408-202ENST00000538573 CLEC11AQ9Y240 323 aa9.37□□□□□ -0.91
LINC02408-202ENST00000538573 EHMT2Q96KQ7 1210 aa9.36□□□□□ -0.91
LINC02408-202ENST00000538573 SPDYE1Q8NFV5 336 aaPredicted RBP9.34□□□□□ -0.91
LINC02408-202ENST00000538573 CECR2Q9BXF3 1484 aa9.31□□□□□ -0.92
LINC02408-202ENST00000538573 EVX2Q03828 476 aa9.3□□□□□ -0.92
LINC02408-202ENST00000538573 SSUH2Q9Y2M2 353 aa9.28□□□□□ -0.92
LINC02408-202ENST00000538573 SUPT5HO00267 1087 aaKnown RBP9.27□□□□□ -0.93
LINC02408-202ENST00000538573 BAZ1AQ9NRL2 1556 aaPredicted RBP9.25□□□□□ -0.93
LINC02408-202ENST00000538573 PRKAR2AP13861 404 aaKnown RBP9.25□□□□□ -0.93
LINC02408-202ENST00000538573 LHX8Q68G74 356 aa9.25□□□□□ -0.93
LINC02408-202ENST00000538573 MROH2BQ7Z745 1585 aa9.24□□□□□ -0.93
LINC02408-202ENST00000538573 SMARCA4P51532 1647 aa9.23□□□□□ -0.93
LINC02408-202ENST00000538573 RSF1Q96T23 1441 aaPredicted RBP9.22□□□□□ -0.93
LINC02408-202ENST00000538573 PRR29P0C7W0 189 aa9.21□□□□□ -0.94
LINC02408-202ENST00000538573 EIF4G1Q04637 1599 aaKnown RBP9.2□□□□□ -0.94
LINC02408-202ENST00000538573 C19orf67A6NJJ6 358 aa9.18□□□□□ -0.94
LINC02408-202ENST00000538573 GABBR2O75899 941 aa9.17□□□□□ -0.94
LINC02408-202ENST00000538573 WIZO95785 1651 aa9.16□□□□□ -0.94
LINC02408-202ENST00000538573 CC2D2AQ9P2K1 1620 aa9.13□□□□□ -0.95
LINC02408-202ENST00000538573 CHADLQ6NUI6 762 aa9.12□□□□□ -0.95
LINC02408-202ENST00000538573 PLSCR2Q9NRY7 297 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms