RNA–Protein interactions for RNA: ENST00000538026.5

SPARC-208, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 5

Gene SPARC, Length 576 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-208ENST00000538026 NISCHQ9Y2I1 1504 aa20.74■□□□□ 0.91
SPARC-208ENST00000538026 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
SPARC-208ENST00000538026 ABCC9O60706 1549 aa18.14■□□□□ 0.49
SPARC-208ENST00000538026 RB1CC1Q8TDY2 1594 aa17.34■□□□□ 0.37
SPARC-208ENST00000538026 NACADO15069 1562 aa17.32■□□□□ 0.36
SPARC-208ENST00000538026 DCAF8L2P0C7V8 631 aa17.32■□□□□ 0.36
SPARC-208ENST00000538026 ZCCHC6Q5VYS8 1495 aaKnown RBP17.25■□□□□ 0.35
SPARC-208ENST00000538026 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.34
SPARC-208ENST00000538026 DCAF1Q9Y4B6 1507 aa17.12■□□□□ 0.33
SPARC-208ENST00000538026 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
SPARC-208ENST00000538026 PABPN1Q86U42 306 aaKnown RBP eCLIP16.99■□□□□ 0.31
SPARC-208ENST00000538026 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
SPARC-208ENST00000538026 DNAJC5BQ9UF47 199 aa16.87■□□□□ 0.29
SPARC-208ENST00000538026 SCRIBQ14160 1630 aa16.83■□□□□ 0.28
SPARC-208ENST00000538026 SHROOM4Q9ULL8 1493 aa16.6■□□□□ 0.25
SPARC-208ENST00000538026 EIF4G1Q04637 1599 aaKnown RBP16.44■□□□□ 0.22
SPARC-208ENST00000538026 CC2D2AQ9P2K1 1620 aa16.41■□□□□ 0.22
SPARC-208ENST00000538026 CECR2Q9BXF3 1484 aa16.29■□□□□ 0.2
SPARC-208ENST00000538026 SMARCA4P51532 1647 aa16.09■□□□□ 0.17
SPARC-208ENST00000538026 ATAD2BQ9ULI0 1458 aa16.05■□□□□ 0.16
SPARC-208ENST00000538026 NCAPD3P42695 1498 aa16.04■□□□□ 0.16
SPARC-208ENST00000538026 MROH2BQ7Z745 1585 aa16.02■□□□□ 0.16
SPARC-208ENST00000538026 BAZ1AQ9NRL2 1556 aaPredicted RBP16.01■□□□□ 0.15
SPARC-208ENST00000538026 PEG3Q9GZU2 1588 aa15.95■□□□□ 0.14
SPARC-208ENST00000538026 SMARCA2P51531 1590 aa15.94■□□□□ 0.14
SPARC-208ENST00000538026 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
SPARC-208ENST00000538026 BAZ1BQ9UIG0 1483 aaKnown RBP15.84■□□□□ 0.13
SPARC-208ENST00000538026 WIZO95785 1651 aa15.83■□□□□ 0.13
SPARC-208ENST00000538026 RSF1Q96T23 1441 aaPredicted RBP15.81■□□□□ 0.12
SPARC-208ENST00000538026 NESP48681 1621 aa15.72■□□□□ 0.11
SPARC-208ENST00000538026 TOP2AP11388 1531 aaKnown RBP15.6■□□□□ 0.09
SPARC-208ENST00000538026 LAMC3Q9Y6N6 1575 aa15.57■□□□□ 0.08
SPARC-208ENST00000538026 CADPSQ9ULU8 1353 aa15.56■□□□□ 0.08
SPARC-208ENST00000538026 ERCC6Q03468 1493 aa15.54■□□□□ 0.08
SPARC-208ENST00000538026 KIF21AQ7Z4S6 1674 aa15.5■□□□□ 0.07
SPARC-208ENST00000538026 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
SPARC-208ENST00000538026 CFTRP13569 1480 aa15.46■□□□□ 0.06
SPARC-208ENST00000538026 THOC2Q8NI27 1593 aaKnown RBP15.45■□□□□ 0.06
SPARC-208ENST00000538026 PDS5BQ9NTI5 1447 aa15.45■□□□□ 0.06
SPARC-208ENST00000538026 CUX2O14529 1486 aa15.43■□□□□ 0.06
SPARC-208ENST00000538026 FANCD2Q9BXW9 1451 aa15.36■□□□□ 0.05
SPARC-208ENST00000538026 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.04
SPARC-208ENST00000538026 CEP164Q9UPV0 1460 aa15.31■□□□□ 0.04
SPARC-208ENST00000538026 SUPT5HO00267 1087 aaKnown RBP15.3■□□□□ 0.04
SPARC-208ENST00000538026 WDR62O43379 1518 aa15.3■□□□□ 0.04
SPARC-208ENST00000538026 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
SPARC-208ENST00000538026 URB2Q14146 1524 aaKnown RBP15.27■□□□□ 0.03
SPARC-208ENST00000538026 DNAJC5Q9H3Z4 198 aa15.14■□□□□ 0.01
SPARC-208ENST00000538026 TOPBP1Q92547 1522 aa15.12■□□□□ 0.01
SPARC-208ENST00000538026 DNMBPQ6XZF7 1577 aa15.07■□□□□ 0
SPARC-208ENST00000538026 ABCC8Q09428 1581 aa15.04■□□□□ -0
SPARC-208ENST00000538026 ZNF608Q9ULD9 1512 aaPredicted RBP15.03■□□□□ -0
SPARC-208ENST00000538026 CUX1P39880 1505 aa15.02■□□□□ -0
SPARC-208ENST00000538026 IFT140Q96RY7 1462 aa15.01□□□□□ -0.01
SPARC-208ENST00000538026 TARBP1Q13395 1621 aaKnown RBP15□□□□□ -0.01
SPARC-208ENST00000538026 POLA1P09884 1462 aaPredicted RBP15□□□□□ -0.01
SPARC-208ENST00000538026 RAD54L2Q9Y4B4 1467 aa14.97□□□□□ -0.01
SPARC-208ENST00000538026 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
SPARC-208ENST00000538026 AQRO60306 1485 aaKnown RBP eCLIP14.93□□□□□ -0.02
SPARC-208ENST00000538026 SOGA1O94964 1423 aa14.92□□□□□ -0.02
SPARC-208ENST00000538026 EIF4G3O43432 1585 aaKnown RBP14.9□□□□□ -0.02
SPARC-208ENST00000538026 TDRD9Q8NDG6 1382 aaKnown RBP14.87□□□□□ -0.03
SPARC-208ENST00000538026 SYNJ1O43426 1573 aa14.86□□□□□ -0.03
SPARC-208ENST00000538026 WRNQ14191 1432 aaPredicted RBP eCLIP14.83□□□□□ -0.03
SPARC-208ENST00000538026 WDR97A6NE52 1622 aa14.83□□□□□ -0.04
SPARC-208ENST00000538026 TOP2BQ02880 1626 aa14.83□□□□□ -0.04
SPARC-208ENST00000538026 BIVM-ERCC5R4GMW8 1640 aa14.82□□□□□ -0.04
SPARC-208ENST00000538026 OSCARQ8IYS5 282 aa14.81□□□□□ -0.04
SPARC-208ENST00000538026 ABCA10Q8WWZ4 1543 aa14.79□□□□□ -0.04
SPARC-208ENST00000538026 CHD1O14646 1710 aa14.75□□□□□ -0.05
SPARC-208ENST00000538026 ABCA5Q8WWZ7 1642 aa14.74□□□□□ -0.05
SPARC-208ENST00000538026 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
SPARC-208ENST00000538026 SNAPC4Q5SXM2 1469 aa14.74□□□□□ -0.05
SPARC-208ENST00000538026 GRIN2BQ13224 1484 aa14.72□□□□□ -0.05
SPARC-208ENST00000538026 PBRM1Q86U86 1689 aa14.71□□□□□ -0.06
SPARC-208ENST00000538026 FBLN2P98095 1184 aa14.68□□□□□ -0.06
SPARC-208ENST00000538026 MAGI1Q96QZ7 1491 aaPredicted RBP14.68□□□□□ -0.06
SPARC-208ENST00000538026 SYNJ2O15056 1496 aa14.64□□□□□ -0.07
SPARC-208ENST00000538026 CHMP7Q8WUX9 453 aaPredicted RBP14.63□□□□□ -0.07
SPARC-208ENST00000538026 RIMBP3CA6NJZ7 1639 aa14.61□□□□□ -0.07
SPARC-208ENST00000538026 RIMBP3BA6NNM3 1639 aa14.61□□□□□ -0.07
SPARC-208ENST00000538026 RIMBP3Q9UFD9 1639 aa14.61□□□□□ -0.07
SPARC-208ENST00000538026 CLASP1Q7Z460 1538 aa14.61□□□□□ -0.07
SPARC-208ENST00000538026 ARHGEF11O15085 1522 aa14.59□□□□□ -0.07
SPARC-208ENST00000538026 ADAMTS12P58397 1594 aa14.59□□□□□ -0.07
SPARC-208ENST00000538026 ERICH3Q5RHP9 1530 aa14.58□□□□□ -0.08
SPARC-208ENST00000538026 TRIM41Q8WV44 630 aa14.56□□□□□ -0.08
SPARC-208ENST00000538026 IGF1RP08069 1367 aa14.56□□□□□ -0.08
SPARC-208ENST00000538026 GRIN2AQ12879 1464 aa14.56□□□□□ -0.08
SPARC-208ENST00000538026 FHAD1B1AJZ9 1412 aa14.55□□□□□ -0.08
SPARC-208ENST00000538026 CEP170Q5SW79 1584 aa14.52□□□□□ -0.08
SPARC-208ENST00000538026 NUP160Q12769 1436 aa14.52□□□□□ -0.08
SPARC-208ENST00000538026 KIF27Q86VH2 1401 aa14.5□□□□□ -0.09
SPARC-208ENST00000538026 RUSC2Q8N2Y8 1516 aa14.5□□□□□ -0.09
SPARC-208ENST00000538026 ARAP1Q96P48 1450 aa14.5□□□□□ -0.09
SPARC-208ENST00000538026 CYB5RLQ6IPT4 315 aa14.47□□□□□ -0.09
SPARC-208ENST00000538026 ERCC6L2Q5T890 1561 aa14.46□□□□□ -0.09
SPARC-208ENST00000538026 SHROOM2Q13796 1616 aa14.41□□□□□ -0.1
SPARC-208ENST00000538026 CARMIL1Q5VZK9 1371 aa14.41□□□□□ -0.1
SPARC-208ENST00000538026 CUL7Q14999 1698 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms