RNA–Protein interactions for RNA: ENST00000537533.1

PTPN6-209, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 3

Gene PTPN6, Length 673 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-209ENST00000537533 NISCHQ9Y2I1 1504 aa30.69■■■□□ 2.5
PTPN6-209ENST00000537533 CCDC180Q9P1Z9 1646 aa27.38■■□□□ 1.97
PTPN6-209ENST00000537533 ABCC9O60706 1549 aa26.82■■□□□ 1.88
PTPN6-209ENST00000537533 RB1CC1Q8TDY2 1594 aa25.8■■□□□ 1.72
PTPN6-209ENST00000537533 NACADO15069 1562 aa25.76■■□□□ 1.71
PTPN6-209ENST00000537533 MYO15BQ96JP2 1530 aa25.6■■□□□ 1.69
PTPN6-209ENST00000537533 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
PTPN6-209ENST00000537533 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
PTPN6-209ENST00000537533 DCAF1Q9Y4B6 1507 aa25.43■■□□□ 1.66
PTPN6-209ENST00000537533 UNC13AQ9UPW8 1703 aa25.28■■□□□ 1.64
PTPN6-209ENST00000537533 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
PTPN6-209ENST00000537533 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.6
PTPN6-209ENST00000537533 SCRIBQ14160 1630 aa24.9■■□□□ 1.58
PTPN6-209ENST00000537533 SHROOM4Q9ULL8 1493 aa24.8■■□□□ 1.56
PTPN6-209ENST00000537533 DNAJC5BQ9UF47 199 aa24.77■■□□□ 1.56
PTPN6-209ENST00000537533 EIF4G1Q04637 1599 aaKnown RBP24.38■■□□□ 1.49
PTPN6-209ENST00000537533 CC2D2AQ9P2K1 1620 aa24.32■■□□□ 1.48
PTPN6-209ENST00000537533 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.46
PTPN6-209ENST00000537533 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
PTPN6-209ENST00000537533 BAZ1AQ9NRL2 1556 aaPredicted RBP23.79■■□□□ 1.4
PTPN6-209ENST00000537533 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
PTPN6-209ENST00000537533 ATAD2BQ9ULI0 1458 aa23.75■■□□□ 1.39
PTPN6-209ENST00000537533 SMARCA2P51531 1590 aa23.72■■□□□ 1.39
PTPN6-209ENST00000537533 PEG3Q9GZU2 1588 aa23.65■■□□□ 1.38
PTPN6-209ENST00000537533 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
PTPN6-209ENST00000537533 MROH2BQ7Z745 1585 aa23.63■■□□□ 1.37
PTPN6-209ENST00000537533 BAZ1BQ9UIG0 1483 aaKnown RBP23.51■■□□□ 1.35
PTPN6-209ENST00000537533 WIZO95785 1651 aa23.38■■□□□ 1.33
PTPN6-209ENST00000537533 RSF1Q96T23 1441 aaPredicted RBP23.31■■□□□ 1.32
PTPN6-209ENST00000537533 NESP48681 1621 aa23.19■■□□□ 1.3
PTPN6-209ENST00000537533 LAMC3Q9Y6N6 1575 aa23.16■■□□□ 1.3
PTPN6-209ENST00000537533 ERCC6Q03468 1493 aa23.13■■□□□ 1.29
PTPN6-209ENST00000537533 TOP2AP11388 1531 aaKnown RBP23.13■■□□□ 1.29
PTPN6-209ENST00000537533 CADPSQ9ULU8 1353 aa23.04■■□□□ 1.28
PTPN6-209ENST00000537533 CUX2O14529 1486 aa22.99■■□□□ 1.27
PTPN6-209ENST00000537533 PDS5BQ9NTI5 1447 aa22.98■■□□□ 1.27
PTPN6-209ENST00000537533 KIF21AQ7Z4S6 1674 aa22.96■■□□□ 1.27
PTPN6-209ENST00000537533 THOC2Q8NI27 1593 aaKnown RBP22.91■■□□□ 1.26
PTPN6-209ENST00000537533 CFTRP13569 1480 aa22.9■■□□□ 1.26
PTPN6-209ENST00000537533 CCDC88BA6NC98 1476 aa22.84■■□□□ 1.25
PTPN6-209ENST00000537533 PRDM2Q13029 1718 aa22.77■■□□□ 1.23
PTPN6-209ENST00000537533 FANCD2Q9BXW9 1451 aa22.76■■□□□ 1.23
PTPN6-209ENST00000537533 MRC2Q9UBG0 1479 aa22.75■■□□□ 1.23
PTPN6-209ENST00000537533 CEP164Q9UPV0 1460 aa22.74■■□□□ 1.23
PTPN6-209ENST00000537533 WDR62O43379 1518 aa22.72■■□□□ 1.23
PTPN6-209ENST00000537533 URB2Q14146 1524 aaKnown RBP22.56■■□□□ 1.2
PTPN6-209ENST00000537533 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
PTPN6-209ENST00000537533 DNAJC5Q9H3Z4 198 aa22.43■■□□□ 1.18
PTPN6-209ENST00000537533 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
PTPN6-209ENST00000537533 TOPBP1Q92547 1522 aa22.4■■□□□ 1.18
PTPN6-209ENST00000537533 DNMBPQ6XZF7 1577 aa22.38■■□□□ 1.17
PTPN6-209ENST00000537533 IFT140Q96RY7 1462 aa22.3■■□□□ 1.16
PTPN6-209ENST00000537533 POLA1P09884 1462 aaPredicted RBP22.2■■□□□ 1.14
PTPN6-209ENST00000537533 ZNF608Q9ULD9 1512 aaPredicted RBP22.19■■□□□ 1.14
PTPN6-209ENST00000537533 TARBP1Q13395 1621 aaKnown RBP22.19■■□□□ 1.14
PTPN6-209ENST00000537533 CUX1P39880 1505 aa22.17■■□□□ 1.14
PTPN6-209ENST00000537533 FGD5Q6ZNL6 1462 aa22.11■■□□□ 1.13
PTPN6-209ENST00000537533 EIF4G3O43432 1585 aaKnown RBP22.11■■□□□ 1.13
PTPN6-209ENST00000537533 SOGA1O94964 1423 aa22.08■■□□□ 1.13
PTPN6-209ENST00000537533 RAD54L2Q9Y4B4 1467 aa22.08■■□□□ 1.12
PTPN6-209ENST00000537533 WDR97A6NE52 1622 aa22.04■■□□□ 1.12
PTPN6-209ENST00000537533 AQRO60306 1485 aaKnown RBP eCLIP22.03■■□□□ 1.12
PTPN6-209ENST00000537533 BIVM-ERCC5R4GMW8 1640 aa21.98■■□□□ 1.11
PTPN6-209ENST00000537533 OSCARQ8IYS5 282 aa21.98■■□□□ 1.11
PTPN6-209ENST00000537533 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
PTPN6-209ENST00000537533 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
PTPN6-209ENST00000537533 TDRD9Q8NDG6 1382 aaKnown RBP21.96■■□□□ 1.11
PTPN6-209ENST00000537533 SYNJ1O43426 1573 aa21.94■■□□□ 1.1
PTPN6-209ENST00000537533 ABCA10Q8WWZ4 1543 aa21.92■■□□□ 1.1
PTPN6-209ENST00000537533 CHD1O14646 1710 aa21.88■■□□□ 1.09
PTPN6-209ENST00000537533 GRIN2BQ13224 1484 aa21.86■■□□□ 1.09
PTPN6-209ENST00000537533 ABCA5Q8WWZ7 1642 aa21.86■■□□□ 1.09
PTPN6-209ENST00000537533 GAPVD1Q14C86 1478 aa21.84■■□□□ 1.09
PTPN6-209ENST00000537533 PBRM1Q86U86 1689 aa21.84■■□□□ 1.09
PTPN6-209ENST00000537533 SNAPC4Q5SXM2 1469 aa21.83■■□□□ 1.09
PTPN6-209ENST00000537533 MAGI1Q96QZ7 1491 aaPredicted RBP21.83■■□□□ 1.08
PTPN6-209ENST00000537533 FBLN2P98095 1184 aa21.74■■□□□ 1.07
PTPN6-209ENST00000537533 SYNJ2O15056 1496 aa21.74■■□□□ 1.07
PTPN6-209ENST00000537533 CHMP7Q8WUX9 453 aaPredicted RBP21.7■■□□□ 1.06
PTPN6-209ENST00000537533 RIMBP3CA6NJZ7 1639 aa21.67■■□□□ 1.06
PTPN6-209ENST00000537533 RIMBP3BA6NNM3 1639 aa21.67■■□□□ 1.06
PTPN6-209ENST00000537533 RIMBP3Q9UFD9 1639 aa21.67■■□□□ 1.06
PTPN6-209ENST00000537533 ERICH3Q5RHP9 1530 aa21.66■■□□□ 1.06
PTPN6-209ENST00000537533 ADAMTS12P58397 1594 aa21.64■■□□□ 1.05
PTPN6-209ENST00000537533 ARHGEF11O15085 1522 aa21.64■■□□□ 1.05
PTPN6-209ENST00000537533 CLASP1Q7Z460 1538 aa21.64■■□□□ 1.05
PTPN6-209ENST00000537533 FHAD1B1AJZ9 1412 aa21.59■■□□□ 1.05
PTPN6-209ENST00000537533 GRIN2AQ12879 1464 aa21.58■■□□□ 1.04
PTPN6-209ENST00000537533 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
PTPN6-209ENST00000537533 KIF27Q86VH2 1401 aa21.53■■□□□ 1.04
PTPN6-209ENST00000537533 NUP160Q12769 1436 aa21.51■■□□□ 1.03
PTPN6-209ENST00000537533 CEP170Q5SW79 1584 aa21.48■■□□□ 1.03
PTPN6-209ENST00000537533 IGF1RP08069 1367 aa21.47■■□□□ 1.03
PTPN6-209ENST00000537533 ARAP1Q96P48 1450 aa21.45■■□□□ 1.03
PTPN6-209ENST00000537533 CUL7Q14999 1698 aa21.44■■□□□ 1.02
PTPN6-209ENST00000537533 CYB5RLQ6IPT4 315 aa21.4■■□□□ 1.02
PTPN6-209ENST00000537533 SHROOM2Q13796 1616 aa21.39■■□□□ 1.01
PTPN6-209ENST00000537533 RUSC2Q8N2Y8 1516 aa21.33■■□□□ 1
PTPN6-209ENST00000537533 CARMIL1Q5VZK9 1371 aa21.32■■□□□ 1
PTPN6-209ENST00000537533 ERCC6L2Q5T890 1561 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms