RNA–Protein interactions for RNA: ENST00000537194.6

SMAD3-203, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-203ENST00000537194 NISCHQ9Y2I1 1504 aa22.23■■□□□ 1.15
SMAD3-203ENST00000537194 ABCC9O60706 1549 aa20.07■□□□□ 0.8
SMAD3-203ENST00000537194 CCDC180Q9P1Z9 1646 aa20.02■□□□□ 0.79
SMAD3-203ENST00000537194 RB1CC1Q8TDY2 1594 aa19.13■□□□□ 0.65
SMAD3-203ENST00000537194 NACADO15069 1562 aa18.96■□□□□ 0.63
SMAD3-203ENST00000537194 DCAF8L2P0C7V8 631 aa18.94■□□□□ 0.62
SMAD3-203ENST00000537194 DNAJC5BQ9UF47 199 aa18.81■□□□□ 0.6
SMAD3-203ENST00000537194 PABPN1Q86U42 306 aaKnown RBP eCLIP18.68■□□□□ 0.58
SMAD3-203ENST00000537194 MYO15BQ96JP2 1530 aa18.64■□□□□ 0.57
SMAD3-203ENST00000537194 UNC13AQ9UPW8 1703 aa18.61■□□□□ 0.57
SMAD3-203ENST00000537194 BICRAQ9NZM4 1560 aa18.43■□□□□ 0.54
SMAD3-203ENST00000537194 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
SMAD3-203ENST00000537194 DCAF1Q9Y4B6 1507 aa18.37■□□□□ 0.53
SMAD3-203ENST00000537194 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
SMAD3-203ENST00000537194 SCRIBQ14160 1630 aa18.21■□□□□ 0.51
SMAD3-203ENST00000537194 CC2D2AQ9P2K1 1620 aa18.12■□□□□ 0.49
SMAD3-203ENST00000537194 CECR2Q9BXF3 1484 aa18.11■□□□□ 0.49
SMAD3-203ENST00000537194 EIF4G1Q04637 1599 aaKnown RBP18.06■□□□□ 0.48
SMAD3-203ENST00000537194 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
SMAD3-203ENST00000537194 DNAJC5Q9H3Z4 198 aa17.44■□□□□ 0.38
SMAD3-203ENST00000537194 ERCC6Q03468 1493 aa17.43■□□□□ 0.38
SMAD3-203ENST00000537194 SMARCA2P51531 1590 aa17.4■□□□□ 0.38
SMAD3-203ENST00000537194 ATAD2BQ9ULI0 1458 aa17.39■□□□□ 0.37
SMAD3-203ENST00000537194 CUX2O14529 1486 aa17.37■□□□□ 0.37
SMAD3-203ENST00000537194 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
SMAD3-203ENST00000537194 HMGXB3Q12766 1538 aa17.34■□□□□ 0.37
SMAD3-203ENST00000537194 BAZ1AQ9NRL2 1556 aaPredicted RBP17.3■□□□□ 0.36
SMAD3-203ENST00000537194 BAZ1BQ9UIG0 1483 aaKnown RBP17.28■□□□□ 0.36
SMAD3-203ENST00000537194 PEG3Q9GZU2 1588 aa17.17■□□□□ 0.34
SMAD3-203ENST00000537194 NESP48681 1621 aa17.17■□□□□ 0.34
SMAD3-203ENST00000537194 LAMC3Q9Y6N6 1575 aa17.12■□□□□ 0.33
SMAD3-203ENST00000537194 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
SMAD3-203ENST00000537194 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
SMAD3-203ENST00000537194 THOC2Q8NI27 1593 aaKnown RBP17.02■□□□□ 0.31
SMAD3-203ENST00000537194 KIF21AQ7Z4S6 1674 aa16.98■□□□□ 0.31
SMAD3-203ENST00000537194 CADPSQ9ULU8 1353 aa16.96■□□□□ 0.31
SMAD3-203ENST00000537194 WIZO95785 1651 aa16.9■□□□□ 0.3
SMAD3-203ENST00000537194 MRC2Q9UBG0 1479 aa16.87■□□□□ 0.29
SMAD3-203ENST00000537194 CEP164Q9UPV0 1460 aa16.81■□□□□ 0.28
SMAD3-203ENST00000537194 WDR62O43379 1518 aa16.8■□□□□ 0.28
SMAD3-203ENST00000537194 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
SMAD3-203ENST00000537194 RSF1Q96T23 1441 aaPredicted RBP16.72■□□□□ 0.27
SMAD3-203ENST00000537194 CFTRP13569 1480 aa16.72■□□□□ 0.27
SMAD3-203ENST00000537194 TOP2AP11388 1531 aaKnown RBP16.71■□□□□ 0.27
SMAD3-203ENST00000537194 TRIM41Q8WV44 630 aa16.71■□□□□ 0.27
SMAD3-203ENST00000537194 OSCARQ8IYS5 282 aa16.62■□□□□ 0.25
SMAD3-203ENST00000537194 PRDM2Q13029 1718 aa16.6■□□□□ 0.25
SMAD3-203ENST00000537194 URB2Q14146 1524 aaKnown RBP16.57■□□□□ 0.24
SMAD3-203ENST00000537194 CCDC88BA6NC98 1476 aa16.5■□□□□ 0.23
SMAD3-203ENST00000537194 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
SMAD3-203ENST00000537194 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
SMAD3-203ENST00000537194 TOPBP1Q92547 1522 aa16.42■□□□□ 0.22
SMAD3-203ENST00000537194 ZNF608Q9ULD9 1512 aaPredicted RBP16.38■□□□□ 0.21
SMAD3-203ENST00000537194 DNMBPQ6XZF7 1577 aa16.37■□□□□ 0.21
SMAD3-203ENST00000537194 RIMBP3CA6NJZ7 1639 aa16.32■□□□□ 0.2
SMAD3-203ENST00000537194 RIMBP3BA6NNM3 1639 aa16.32■□□□□ 0.2
SMAD3-203ENST00000537194 RIMBP3Q9UFD9 1639 aa16.32■□□□□ 0.2
SMAD3-203ENST00000537194 EIF4G3O43432 1585 aaKnown RBP16.31■□□□□ 0.2
SMAD3-203ENST00000537194 FBLN2P98095 1184 aa16.29■□□□□ 0.2
SMAD3-203ENST00000537194 ARHGEF11O15085 1522 aa16.26■□□□□ 0.19
SMAD3-203ENST00000537194 AQRO60306 1485 aaKnown RBP eCLIP16.26■□□□□ 0.192e-6■■■■□ 21.5
SMAD3-203ENST00000537194 TARBP1Q13395 1621 aaKnown RBP16.24■□□□□ 0.19
SMAD3-203ENST00000537194 POLA1P09884 1462 aaPredicted RBP16.23■□□□□ 0.19
SMAD3-203ENST00000537194 CHD1O14646 1710 aa16.23■□□□□ 0.19
SMAD3-203ENST00000537194 CYB5RLQ6IPT4 315 aa16.22■□□□□ 0.19
SMAD3-203ENST00000537194 SOGA1O94964 1423 aa16.21■□□□□ 0.19
SMAD3-203ENST00000537194 RAD54L2Q9Y4B4 1467 aa16.16■□□□□ 0.18
SMAD3-203ENST00000537194 TDRD9Q8NDG6 1382 aaKnown RBP16.16■□□□□ 0.18
SMAD3-203ENST00000537194 WDR97A6NE52 1622 aa16.16■□□□□ 0.18
SMAD3-203ENST00000537194 CHMP7Q8WUX9 453 aaPredicted RBP16.15■□□□□ 0.18
SMAD3-203ENST00000537194 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
SMAD3-203ENST00000537194 FGD5Q6ZNL6 1462 aa16.13■□□□□ 0.17
SMAD3-203ENST00000537194 SNAPC4Q5SXM2 1469 aa16.1■□□□□ 0.17
SMAD3-203ENST00000537194 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-203ENST00000537194 SYNJ1O43426 1573 aa16.09■□□□□ 0.17
SMAD3-203ENST00000537194 GRIN2BQ13224 1484 aa16.08■□□□□ 0.16
SMAD3-203ENST00000537194 ARAP1Q96P48 1450 aa16.07■□□□□ 0.16
SMAD3-203ENST00000537194 CUX1P39880 1505 aa16.07■□□□□ 0.16
SMAD3-203ENST00000537194 SUPT5HO00267 1087 aaKnown RBP16.04■□□□□ 0.16
SMAD3-203ENST00000537194 SYNJ2O15056 1496 aa16.03■□□□□ 0.16
SMAD3-203ENST00000537194 GAPVD1Q14C86 1478 aa16.01■□□□□ 0.15
SMAD3-203ENST00000537194 CLASP1Q7Z460 1538 aa15.99■□□□□ 0.15
SMAD3-203ENST00000537194 PBRM1Q86U86 1689 aa15.99■□□□□ 0.15
SMAD3-203ENST00000537194 ABCA10Q8WWZ4 1543 aa15.95■□□□□ 0.14
SMAD3-203ENST00000537194 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.14
SMAD3-203ENST00000537194 ABCA5Q8WWZ7 1642 aa15.9■□□□□ 0.14
SMAD3-203ENST00000537194 GRIN2AQ12879 1464 aa15.84■□□□□ 0.13
SMAD3-203ENST00000537194 TOP2BQ02880 1626 aa15.83■□□□□ 0.12
SMAD3-203ENST00000537194 BIVM-ERCC5R4GMW8 1640 aa15.82■□□□□ 0.12
SMAD3-203ENST00000537194 FHAD1B1AJZ9 1412 aa15.81■□□□□ 0.12
SMAD3-203ENST00000537194 ADAMTS12P58397 1594 aa15.8■□□□□ 0.12
SMAD3-203ENST00000537194 AEBP2Q6ZN18 517 aaPredicted RBP15.78■□□□□ 0.12
SMAD3-203ENST00000537194 ERICH3Q5RHP9 1530 aa15.78■□□□□ 0.12
SMAD3-203ENST00000537194 NUP160Q12769 1436 aa15.77■□□□□ 0.12
SMAD3-203ENST00000537194 CEP170Q5SW79 1584 aa15.75■□□□□ 0.11
SMAD3-203ENST00000537194 ERCC6L2Q5T890 1561 aa15.7■□□□□ 0.1
SMAD3-203ENST00000537194 SHROOM2Q13796 1616 aa15.7■□□□□ 0.1
SMAD3-203ENST00000537194 JPH4Q96JJ6 628 aa15.69■□□□□ 0.1
SMAD3-203ENST00000537194 NPM1P06748 294 aaKnown RBP eCLIP15.68■□□□□ 0.1
SMAD3-203ENST00000537194 PRG4Q92954 1404 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms