RNA–Protein interactions for RNA: ENST00000537164.1

SFSWAP-205, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 961 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-205ENST00000537164 NISCHQ9Y2I1 1504 aa42.4■■■■■ 4.38
SFSWAP-205ENST00000537164 CCDC180Q9P1Z9 1646 aa37.86■■■■□ 3.65
SFSWAP-205ENST00000537164 ABCC9O60706 1549 aa37.11■■■■□ 3.53
SFSWAP-205ENST00000537164 RB1CC1Q8TDY2 1594 aa35.68■■■■□ 3.3
SFSWAP-205ENST00000537164 NACADO15069 1562 aa35.61■■■■□ 3.29
SFSWAP-205ENST00000537164 MYO15BQ96JP2 1530 aa35.4■■■■□ 3.26
SFSWAP-205ENST00000537164 DCAF8L2P0C7V8 631 aa35.31■■■■□ 3.24
SFSWAP-205ENST00000537164 ZCCHC6Q5VYS8 1495 aaKnown RBP35.28■■■■□ 3.24
SFSWAP-205ENST00000537164 DCAF1Q9Y4B6 1507 aa35.14■■■■□ 3.22
SFSWAP-205ENST00000537164 UNC13AQ9UPW8 1703 aa34.93■■■■□ 3.18
SFSWAP-205ENST00000537164 BICRAQ9NZM4 1560 aa34.65■■■■□ 3.14
SFSWAP-205ENST00000537164 PABPN1Q86U42 306 aaKnown RBP eCLIP34.59■■■■□ 3.134e-7■■□□□ 14.5
SFSWAP-205ENST00000537164 SCRIBQ14160 1630 aa34.39■■■■□ 3.1
SFSWAP-205ENST00000537164 SHROOM4Q9ULL8 1493 aa34.32■■■■□ 3.08
SFSWAP-205ENST00000537164 DNAJC5BQ9UF47 199 aa34.3■■■■□ 3.08
SFSWAP-205ENST00000537164 EIF4G1Q04637 1599 aaKnown RBP33.72■■■□□ 2.99
SFSWAP-205ENST00000537164 CC2D2AQ9P2K1 1620 aa33.63■■■□□ 2.97
SFSWAP-205ENST00000537164 CECR2Q9BXF3 1484 aa33.4■■■□□ 2.94
SFSWAP-205ENST00000537164 SMARCA4P51532 1647 aa32.95■■■□□ 2.86
SFSWAP-205ENST00000537164 BAZ1AQ9NRL2 1556 aaPredicted RBP32.87■■■□□ 2.85
SFSWAP-205ENST00000537164 NCAPD3P42695 1498 aa32.86■■■□□ 2.85
SFSWAP-205ENST00000537164 ATAD2BQ9ULI0 1458 aa32.81■■■□□ 2.84
SFSWAP-205ENST00000537164 SMARCA2P51531 1590 aa32.78■■■□□ 2.84
SFSWAP-205ENST00000537164 PEG3Q9GZU2 1588 aa32.7■■■□□ 2.82
SFSWAP-205ENST00000537164 HMGXB3Q12766 1538 aa32.69■■■□□ 2.82
SFSWAP-205ENST00000537164 MROH2BQ7Z745 1585 aa32.64■■■□□ 2.82
SFSWAP-205ENST00000537164 BAZ1BQ9UIG0 1483 aaKnown RBP32.5■■■□□ 2.79
SFSWAP-205ENST00000537164 WIZO95785 1651 aa32.27■■■□□ 2.76
SFSWAP-205ENST00000537164 RSF1Q96T23 1441 aaPredicted RBP32.18■■■□□ 2.74
SFSWAP-205ENST00000537164 NESP48681 1621 aa32.07■■■□□ 2.72
SFSWAP-205ENST00000537164 LAMC3Q9Y6N6 1575 aa32.04■■■□□ 2.72
SFSWAP-205ENST00000537164 ERCC6Q03468 1493 aa31.99■■■□□ 2.71
SFSWAP-205ENST00000537164 TOP2AP11388 1531 aaKnown RBP31.94■■■□□ 2.7
SFSWAP-205ENST00000537164 CADPSQ9ULU8 1353 aa31.85■■■□□ 2.69
SFSWAP-205ENST00000537164 CUX2O14529 1486 aa31.84■■■□□ 2.69
SFSWAP-205ENST00000537164 PDS5BQ9NTI5 1447 aa31.78■■■□□ 2.68
SFSWAP-205ENST00000537164 KIF21AQ7Z4S6 1674 aa31.74■■■□□ 2.67
SFSWAP-205ENST00000537164 THOC2Q8NI27 1593 aaKnown RBP31.71■■■□□ 2.67
SFSWAP-205ENST00000537164 CFTRP13569 1480 aa31.65■■■□□ 2.66
SFSWAP-205ENST00000537164 CCDC88BA6NC98 1476 aa31.54■■■□□ 2.64
SFSWAP-205ENST00000537164 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
SFSWAP-205ENST00000537164 MRC2Q9UBG0 1479 aa31.46■■■□□ 2.63
SFSWAP-205ENST00000537164 CEP164Q9UPV0 1460 aa31.46■■■□□ 2.63
SFSWAP-205ENST00000537164 PRDM2Q13029 1718 aa31.44■■■□□ 2.62
SFSWAP-205ENST00000537164 WDR62O43379 1518 aa31.41■■■□□ 2.62
SFSWAP-205ENST00000537164 URB2Q14146 1524 aaKnown RBP31.19■■■□□ 2.58
SFSWAP-205ENST00000537164 DNAJC5Q9H3Z4 198 aa31.1■■■□□ 2.57
SFSWAP-205ENST00000537164 SUPT5HO00267 1087 aaKnown RBP31.04■■■□□ 2.56
SFSWAP-205ENST00000537164 ABCC8Q09428 1581 aa30.98■■■□□ 2.55
SFSWAP-205ENST00000537164 TOPBP1Q92547 1522 aa30.96■■■□□ 2.55
SFSWAP-205ENST00000537164 DNMBPQ6XZF7 1577 aa30.92■■■□□ 2.54
SFSWAP-205ENST00000537164 IFT140Q96RY7 1462 aa30.82■■■□□ 2.53
SFSWAP-205ENST00000537164 TARBP1Q13395 1621 aaKnown RBP30.69■■■□□ 2.5
SFSWAP-205ENST00000537164 POLA1P09884 1462 aaPredicted RBP30.68■■■□□ 2.5
SFSWAP-205ENST00000537164 ZNF608Q9ULD9 1512 aaPredicted RBP30.68■■■□□ 2.5
SFSWAP-205ENST00000537164 CUX1P39880 1505 aa30.63■■■□□ 2.49
SFSWAP-205ENST00000537164 EIF4G3O43432 1585 aaKnown RBP30.58■■■□□ 2.49
SFSWAP-205ENST00000537164 FGD5Q6ZNL6 1462 aa30.55■■■□□ 2.48
SFSWAP-205ENST00000537164 SOGA1O94964 1423 aa30.52■■■□□ 2.48
SFSWAP-205ENST00000537164 RAD54L2Q9Y4B4 1467 aa30.5■■■□□ 2.47
SFSWAP-205ENST00000537164 WDR97A6NE52 1622 aa30.47■■■□□ 2.47
SFSWAP-205ENST00000537164 AQRO60306 1485 aaKnown RBP eCLIP30.46■■■□□ 2.474e-7■■■■■ 29.4
SFSWAP-205ENST00000537164 OSCARQ8IYS5 282 aa30.42■■■□□ 2.46
SFSWAP-205ENST00000537164 BIVM-ERCC5R4GMW8 1640 aa30.36■■■□□ 2.45
SFSWAP-205ENST00000537164 TDRD9Q8NDG6 1382 aaKnown RBP30.35■■■□□ 2.45
SFSWAP-205ENST00000537164 TOP2BQ02880 1626 aa30.35■■■□□ 2.45
SFSWAP-205ENST00000537164 WRNQ14191 1432 aaPredicted RBP eCLIP30.33■■■□□ 2.45
SFSWAP-205ENST00000537164 ABCA10Q8WWZ4 1543 aa30.29■■■□□ 2.44
SFSWAP-205ENST00000537164 SYNJ1O43426 1573 aa30.28■■■□□ 2.44
SFSWAP-205ENST00000537164 CHD1O14646 1710 aa30.24■■■□□ 2.43
SFSWAP-205ENST00000537164 GRIN2BQ13224 1484 aa30.21■■■□□ 2.43
SFSWAP-205ENST00000537164 ABCA5Q8WWZ7 1642 aa30.2■■■□□ 2.43
SFSWAP-205ENST00000537164 MAGI1Q96QZ7 1491 aaPredicted RBP30.19■■■□□ 2.42
SFSWAP-205ENST00000537164 GAPVD1Q14C86 1478 aa30.18■■■□□ 2.42
SFSWAP-205ENST00000537164 SNAPC4Q5SXM2 1469 aa30.18■■■□□ 2.42
SFSWAP-205ENST00000537164 PBRM1Q86U86 1689 aa30.17■■■□□ 2.42
SFSWAP-205ENST00000537164 SYNJ2O15056 1496 aa30.06■■■□□ 2.4
SFSWAP-205ENST00000537164 FBLN2P98095 1184 aa30.05■■■□□ 2.4
SFSWAP-205ENST00000537164 RIMBP3CA6NJZ7 1639 aa30■■■□□ 2.39
SFSWAP-205ENST00000537164 RIMBP3BA6NNM3 1639 aa30■■■□□ 2.39
SFSWAP-205ENST00000537164 RIMBP3Q9UFD9 1639 aa30■■■□□ 2.39
SFSWAP-205ENST00000537164 CHMP7Q8WUX9 453 aaPredicted RBP29.99■■■□□ 2.39
SFSWAP-205ENST00000537164 ARHGEF11O15085 1522 aa29.96■■■□□ 2.39
SFSWAP-205ENST00000537164 CLASP1Q7Z460 1538 aa29.94■■■□□ 2.38
SFSWAP-205ENST00000537164 ERICH3Q5RHP9 1530 aa29.93■■■□□ 2.38
SFSWAP-205ENST00000537164 ADAMTS12P58397 1594 aa29.9■■■□□ 2.38
SFSWAP-205ENST00000537164 TRIM41Q8WV44 630 aa29.84■■■□□ 2.37
SFSWAP-205ENST00000537164 GRIN2AQ12879 1464 aa29.83■■■□□ 2.37
SFSWAP-205ENST00000537164 FHAD1B1AJZ9 1412 aa29.83■■■□□ 2.37
SFSWAP-205ENST00000537164 NUP160Q12769 1436 aa29.73■■■□□ 2.35
SFSWAP-205ENST00000537164 KIF27Q86VH2 1401 aa29.71■■■□□ 2.35
SFSWAP-205ENST00000537164 CEP170Q5SW79 1584 aa29.69■■■□□ 2.34
SFSWAP-205ENST00000537164 ARAP1Q96P48 1450 aa29.69■■■□□ 2.34
SFSWAP-205ENST00000537164 IGF1RP08069 1367 aa29.64■■■□□ 2.34
SFSWAP-205ENST00000537164 CUL7Q14999 1698 aa29.61■■■□□ 2.33
SFSWAP-205ENST00000537164 CYB5RLQ6IPT4 315 aa29.61■■■□□ 2.33
SFSWAP-205ENST00000537164 SHROOM2Q13796 1616 aa29.57■■■□□ 2.32
SFSWAP-205ENST00000537164 RUSC2Q8N2Y8 1516 aa29.48■■■□□ 2.31
SFSWAP-205ENST00000537164 ERCC6L2Q5T890 1561 aa29.45■■■□□ 2.31
SFSWAP-205ENST00000537164 CARMIL1Q5VZK9 1371 aa29.43■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms