RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 NISCHQ9Y2I1 1504 aa44.06■■■■■ 4.64
TNFRSF1A-209ENST00000536717 CCDC180Q9P1Z9 1646 aa39.34■■■■□ 3.89
TNFRSF1A-209ENST00000536717 ABCC9O60706 1549 aa38.75■■■■□ 3.79
TNFRSF1A-209ENST00000536717 RB1CC1Q8TDY2 1594 aa37.14■■■■□ 3.54
TNFRSF1A-209ENST00000536717 NACADO15069 1562 aa37.02■■■■□ 3.52
TNFRSF1A-209ENST00000536717 DCAF8L2P0C7V8 631 aa36.86■■■■□ 3.49
TNFRSF1A-209ENST00000536717 MYO15BQ96JP2 1530 aa36.7■■■■□ 3.47
TNFRSF1A-209ENST00000536717 ZCCHC6Q5VYS8 1495 aaKnown RBP36.64■■■■□ 3.46
TNFRSF1A-209ENST00000536717 UNC13AQ9UPW8 1703 aa36.45■■■■□ 3.43
TNFRSF1A-209ENST00000536717 DCAF1Q9Y4B6 1507 aa36.43■■■■□ 3.42
TNFRSF1A-209ENST00000536717 PABPN1Q86U42 306 aaKnown RBP eCLIP36.13■■■■□ 3.37
TNFRSF1A-209ENST00000536717 BICRAQ9NZM4 1560 aa36.09■■■■□ 3.37
TNFRSF1A-209ENST00000536717 DNAJC5BQ9UF47 199 aa35.87■■■■□ 3.33
TNFRSF1A-209ENST00000536717 SCRIBQ14160 1630 aa35.86■■■■□ 3.33
TNFRSF1A-209ENST00000536717 SHROOM4Q9ULL8 1493 aa35.59■■■■□ 3.29
TNFRSF1A-209ENST00000536717 EIF4G1Q04637 1599 aaKnown RBP35.13■■■■□ 3.21
TNFRSF1A-209ENST00000536717 CC2D2AQ9P2K1 1620 aa35.08■■■■□ 3.21
TNFRSF1A-209ENST00000536717 CECR2Q9BXF3 1484 aa34.83■■■■□ 3.17
TNFRSF1A-209ENST00000536717 SMARCA4P51532 1647 aa34.28■■■■□ 3.08
TNFRSF1A-209ENST00000536717 NCAPD3P42695 1498 aa34.15■■■■□ 3.06
TNFRSF1A-209ENST00000536717 BAZ1AQ9NRL2 1556 aaPredicted RBP34.15■■■■□ 3.06
TNFRSF1A-209ENST00000536717 ATAD2BQ9ULI0 1458 aa34.14■■■■□ 3.06
TNFRSF1A-209ENST00000536717 SMARCA2P51531 1590 aa34.07■■■■□ 3.04
TNFRSF1A-209ENST00000536717 HMGXB3Q12766 1538 aa33.98■■■■□ 3.03
TNFRSF1A-209ENST00000536717 MROH2BQ7Z745 1585 aa33.96■■■■□ 3.03
TNFRSF1A-209ENST00000536717 PEG3Q9GZU2 1588 aa33.94■■■■□ 3.02
TNFRSF1A-209ENST00000536717 BAZ1BQ9UIG0 1483 aaKnown RBP33.82■■■■□ 3
TNFRSF1A-209ENST00000536717 WIZO95785 1651 aa33.62■■■□□ 2.97
TNFRSF1A-209ENST00000536717 NESP48681 1621 aa33.47■■■□□ 2.95
TNFRSF1A-209ENST00000536717 RSF1Q96T23 1441 aaPredicted RBP33.43■■■□□ 2.94
TNFRSF1A-209ENST00000536717 ERCC6Q03468 1493 aa33.38■■■□□ 2.93
TNFRSF1A-209ENST00000536717 LAMC3Q9Y6N6 1575 aa33.33■■■□□ 2.93
TNFRSF1A-209ENST00000536717 TOP2AP11388 1531 aaKnown RBP33.19■■■□□ 2.9
TNFRSF1A-209ENST00000536717 CUX2O14529 1486 aa33.16■■■□□ 2.9
TNFRSF1A-209ENST00000536717 CADPSQ9ULU8 1353 aa33.13■■■□□ 2.89
TNFRSF1A-209ENST00000536717 KIF21AQ7Z4S6 1674 aa33.12■■■□□ 2.89
TNFRSF1A-209ENST00000536717 PDS5BQ9NTI5 1447 aa33.06■■■□□ 2.88
TNFRSF1A-209ENST00000536717 THOC2Q8NI27 1593 aaKnown RBP33.06■■■□□ 2.88
TNFRSF1A-209ENST00000536717 CFTRP13569 1480 aa32.89■■■□□ 2.86
TNFRSF1A-209ENST00000536717 CCDC88BA6NC98 1476 aa32.8■■■□□ 2.84
TNFRSF1A-209ENST00000536717 FANCD2Q9BXW9 1451 aa32.76■■■□□ 2.83
TNFRSF1A-209ENST00000536717 MRC2Q9UBG0 1479 aa32.76■■■□□ 2.83
TNFRSF1A-209ENST00000536717 CEP164Q9UPV0 1460 aa32.75■■■□□ 2.83
TNFRSF1A-209ENST00000536717 PRDM2Q13029 1718 aa32.73■■■□□ 2.83
TNFRSF1A-209ENST00000536717 WDR62O43379 1518 aa32.7■■■□□ 2.83
TNFRSF1A-209ENST00000536717 DNAJC5Q9H3Z4 198 aa32.5■■■□□ 2.79
TNFRSF1A-209ENST00000536717 URB2Q14146 1524 aaKnown RBP32.48■■■□□ 2.79
TNFRSF1A-209ENST00000536717 SUPT5HO00267 1087 aaKnown RBP32.31■■■□□ 2.76
TNFRSF1A-209ENST00000536717 TOPBP1Q92547 1522 aa32.22■■■□□ 2.75
TNFRSF1A-209ENST00000536717 DNMBPQ6XZF7 1577 aa32.16■■■□□ 2.74
TNFRSF1A-209ENST00000536717 ABCC8Q09428 1581 aa32.16■■■□□ 2.74
TNFRSF1A-209ENST00000536717 IFT140Q96RY7 1462 aa32.06■■■□□ 2.72
TNFRSF1A-209ENST00000536717 ZNF608Q9ULD9 1512 aaPredicted RBP31.99■■■□□ 2.71
TNFRSF1A-209ENST00000536717 POLA1P09884 1462 aaPredicted RBP31.93■■■□□ 2.7
TNFRSF1A-209ENST00000536717 TARBP1Q13395 1621 aaKnown RBP31.93■■■□□ 2.7
TNFRSF1A-209ENST00000536717 CUX1P39880 1505 aa31.88■■■□□ 2.69
TNFRSF1A-209ENST00000536717 EIF4G3O43432 1585 aaKnown RBP31.86■■■□□ 2.69
TNFRSF1A-209ENST00000536717 FGD5Q6ZNL6 1462 aa31.8■■■□□ 2.68
TNFRSF1A-209ENST00000536717 RAD54L2Q9Y4B4 1467 aa31.79■■■□□ 2.68
TNFRSF1A-209ENST00000536717 SOGA1O94964 1423 aa31.76■■■□□ 2.67
TNFRSF1A-209ENST00000536717 AQRO60306 1485 aaKnown RBP eCLIP31.75■■■□□ 2.673e-6■■■■□ 24.7
TNFRSF1A-209ENST00000536717 OSCARQ8IYS5 282 aa31.7■■■□□ 2.66
TNFRSF1A-209ENST00000536717 WDR97A6NE52 1622 aa31.63■■■□□ 2.65
TNFRSF1A-209ENST00000536717 TDRD9Q8NDG6 1382 aaKnown RBP31.62■■■□□ 2.65
TNFRSF1A-209ENST00000536717 CHD1O14646 1710 aa31.57■■■□□ 2.64
TNFRSF1A-209ENST00000536717 BIVM-ERCC5R4GMW8 1640 aa31.55■■■□□ 2.64
TNFRSF1A-209ENST00000536717 TOP2BQ02880 1626 aa31.53■■■□□ 2.64
TNFRSF1A-209ENST00000536717 WRNQ14191 1432 aaPredicted RBP eCLIP31.52■■■□□ 2.64
TNFRSF1A-209ENST00000536717 SYNJ1O43426 1573 aa31.51■■■□□ 2.64
TNFRSF1A-209ENST00000536717 ABCA10Q8WWZ4 1543 aa31.48■■■□□ 2.63
TNFRSF1A-209ENST00000536717 SNAPC4Q5SXM2 1469 aa31.44■■■□□ 2.62
TNFRSF1A-209ENST00000536717 PBRM1Q86U86 1689 aa31.44■■■□□ 2.62
TNFRSF1A-209ENST00000536717 GRIN2BQ13224 1484 aa31.42■■■□□ 2.62
TNFRSF1A-209ENST00000536717 ABCA5Q8WWZ7 1642 aa31.42■■■□□ 2.62
TNFRSF1A-209ENST00000536717 GAPVD1Q14C86 1478 aa31.4■■■□□ 2.62
TNFRSF1A-209ENST00000536717 MAGI1Q96QZ7 1491 aaPredicted RBP31.39■■■□□ 2.62
TNFRSF1A-209ENST00000536717 FBLN2P98095 1184 aa31.37■■■□□ 2.61
TNFRSF1A-209ENST00000536717 RIMBP3CA6NJZ7 1639 aa31.32■■■□□ 2.6
TNFRSF1A-209ENST00000536717 RIMBP3BA6NNM3 1639 aa31.32■■■□□ 2.6
TNFRSF1A-209ENST00000536717 RIMBP3Q9UFD9 1639 aa31.32■■■□□ 2.6
TNFRSF1A-209ENST00000536717 TRIM41Q8WV44 630 aa31.28■■■□□ 2.6
TNFRSF1A-209ENST00000536717 SYNJ2O15056 1496 aa31.26■■■□□ 2.6
TNFRSF1A-209ENST00000536717 ARHGEF11O15085 1522 aa31.25■■■□□ 2.59
TNFRSF1A-209ENST00000536717 CHMP7Q8WUX9 453 aaPredicted RBP31.24■■■□□ 2.59
TNFRSF1A-209ENST00000536717 CLASP1Q7Z460 1538 aa31.17■■■□□ 2.58
TNFRSF1A-209ENST00000536717 ADAMTS12P58397 1594 aa31.13■■■□□ 2.57
TNFRSF1A-209ENST00000536717 ERICH3Q5RHP9 1530 aa31.09■■■□□ 2.57
TNFRSF1A-209ENST00000536717 GRIN2AQ12879 1464 aa31.05■■■□□ 2.56
TNFRSF1A-209ENST00000536717 FHAD1B1AJZ9 1412 aa31.01■■■□□ 2.55
TNFRSF1A-209ENST00000536717 ARAP1Q96P48 1450 aa30.98■■■□□ 2.55
TNFRSF1A-209ENST00000536717 CEP170Q5SW79 1584 aa30.94■■■□□ 2.54
TNFRSF1A-209ENST00000536717 CYB5RLQ6IPT4 315 aa30.93■■■□□ 2.54
TNFRSF1A-209ENST00000536717 NUP160Q12769 1436 aa30.92■■■□□ 2.54
TNFRSF1A-209ENST00000536717 KIF27Q86VH2 1401 aa30.86■■■□□ 2.53
TNFRSF1A-209ENST00000536717 IGF1RP08069 1367 aa30.79■■■□□ 2.52
TNFRSF1A-209ENST00000536717 CUL7Q14999 1698 aa30.77■■■□□ 2.52
TNFRSF1A-209ENST00000536717 SHROOM2Q13796 1616 aa30.77■■■□□ 2.52
TNFRSF1A-209ENST00000536717 ERCC6L2Q5T890 1561 aa30.74■■■□□ 2.51
TNFRSF1A-209ENST00000536717 RUSC2Q8N2Y8 1516 aa30.68■■■□□ 2.5
TNFRSF1A-209ENST00000536717 CARMIL1Q5VZK9 1371 aa30.6■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 184.4 ms