RNA–Protein interactions for RNA: ENST00000536708.6

CDK5RAP3-202, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2 BASIC

Gene CDK5RAP3, Length 1,975 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-202ENST00000536708 NISCHQ9Y2I1 1504 aa29.75■■■□□ 2.35
CDK5RAP3-202ENST00000536708 CCDC180Q9P1Z9 1646 aa26.12■■□□□ 1.77
CDK5RAP3-202ENST00000536708 ZCCHC6Q5VYS8 1495 aaKnown RBP24.96■■□□□ 1.59
CDK5RAP3-202ENST00000536708 ABCC9O60706 1549 aa24.95■■□□□ 1.58
CDK5RAP3-202ENST00000536708 DCAF8L2P0C7V8 631 aa24.6■■□□□ 1.53
CDK5RAP3-202ENST00000536708 DCAF1Q9Y4B6 1507 aa24.53■■□□□ 1.52
CDK5RAP3-202ENST00000536708 MYO15BQ96JP2 1530 aa24.32■■□□□ 1.48
CDK5RAP3-202ENST00000536708 NACADO15069 1562 aa24.31■■□□□ 1.48
CDK5RAP3-202ENST00000536708 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.46
CDK5RAP3-202ENST00000536708 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
CDK5RAP3-202ENST00000536708 SCRIBQ14160 1630 aa24.05■■□□□ 1.44
CDK5RAP3-202ENST00000536708 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
CDK5RAP3-202ENST00000536708 BICRAQ9NZM4 1560 aa23.55■■□□□ 1.36
CDK5RAP3-202ENST00000536708 PABPN1Q86U42 306 aaKnown RBP eCLIP23.41■■□□□ 1.342e-10■■□□□ 14.3
CDK5RAP3-202ENST00000536708 CECR2Q9BXF3 1484 aa23.18■■□□□ 1.3
CDK5RAP3-202ENST00000536708 MROH2BQ7Z745 1585 aa23.02■■□□□ 1.28
CDK5RAP3-202ENST00000536708 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
CDK5RAP3-202ENST00000536708 SMARCA4P51532 1647 aa22.99■■□□□ 1.27
CDK5RAP3-202ENST00000536708 BAZ1AQ9NRL2 1556 aaPredicted RBP22.98■■□□□ 1.27
CDK5RAP3-202ENST00000536708 RSF1Q96T23 1441 aaPredicted RBP22.95■■□□□ 1.27
CDK5RAP3-202ENST00000536708 WIZO95785 1651 aa22.87■■□□□ 1.25
CDK5RAP3-202ENST00000536708 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
CDK5RAP3-202ENST00000536708 PEG3Q9GZU2 1588 aa22.66■■□□□ 1.22
CDK5RAP3-202ENST00000536708 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
CDK5RAP3-202ENST00000536708 CC2D2AQ9P2K1 1620 aa22.59■■□□□ 1.21
CDK5RAP3-202ENST00000536708 SMARCA2P51531 1590 aa22.57■■□□□ 1.2
CDK5RAP3-202ENST00000536708 TOP2AP11388 1531 aaKnown RBP22.56■■□□□ 1.2
CDK5RAP3-202ENST00000536708 BAZ1BQ9UIG0 1483 aaKnown RBP22.48■■□□□ 1.19
CDK5RAP3-202ENST00000536708 HMGXB3Q12766 1538 aa22.42■■□□□ 1.18
CDK5RAP3-202ENST00000536708 NCAPD3P42695 1498 aa22.4■■□□□ 1.18
CDK5RAP3-202ENST00000536708 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
CDK5RAP3-202ENST00000536708 DNAJC5BQ9UF47 199 aa22.2■■□□□ 1.14
CDK5RAP3-202ENST00000536708 PRDM2Q13029 1718 aa21.91■■□□□ 1.1
CDK5RAP3-202ENST00000536708 CFTRP13569 1480 aa21.86■■□□□ 1.09
CDK5RAP3-202ENST00000536708 NESP48681 1621 aa21.85■■□□□ 1.09
CDK5RAP3-202ENST00000536708 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
CDK5RAP3-202ENST00000536708 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
CDK5RAP3-202ENST00000536708 CADPSQ9ULU8 1353 aa21.8■■□□□ 1.08
CDK5RAP3-202ENST00000536708 LAMC3Q9Y6N6 1575 aa21.75■■□□□ 1.07
CDK5RAP3-202ENST00000536708 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
CDK5RAP3-202ENST00000536708 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
CDK5RAP3-202ENST00000536708 FANCD2Q9BXW9 1451 aa21.63■■□□□ 1.05
CDK5RAP3-202ENST00000536708 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.05
CDK5RAP3-202ENST00000536708 TRIM41Q8WV44 630 aa21.57■■□□□ 1.04
CDK5RAP3-202ENST00000536708 CUX1P39880 1505 aa21.55■■□□□ 1.04
CDK5RAP3-202ENST00000536708 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
CDK5RAP3-202ENST00000536708 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.04
CDK5RAP3-202ENST00000536708 TOP2BQ02880 1626 aa21.52■■□□□ 1.04
CDK5RAP3-202ENST00000536708 PDS5BQ9NTI5 1447 aa21.5■■□□□ 1.03
CDK5RAP3-202ENST00000536708 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
CDK5RAP3-202ENST00000536708 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
CDK5RAP3-202ENST00000536708 TOPBP1Q92547 1522 aa21.38■■□□□ 1.01
CDK5RAP3-202ENST00000536708 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
CDK5RAP3-202ENST00000536708 FGD5Q6ZNL6 1462 aa21.33■■□□□ 1.01
CDK5RAP3-202ENST00000536708 THOC2Q8NI27 1593 aaKnown RBP21.33■■□□□ 1
CDK5RAP3-202ENST00000536708 MRC2Q9UBG0 1479 aa21.32■■□□□ 1
CDK5RAP3-202ENST00000536708 SOGA1O94964 1423 aa21.3■■□□□ 1
CDK5RAP3-202ENST00000536708 FAM9AQ8IZU1 332 aaPredicted RBP21.27■■□□□ 1
CDK5RAP3-202ENST00000536708 RUSC2Q8N2Y8 1516 aa21.27■■□□□ 1
CDK5RAP3-202ENST00000536708 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
CDK5RAP3-202ENST00000536708 WDR62O43379 1518 aa21.25■□□□□ 0.99
CDK5RAP3-202ENST00000536708 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
CDK5RAP3-202ENST00000536708 WDR97A6NE52 1622 aa21.19■□□□□ 0.98
CDK5RAP3-202ENST00000536708 TARBP1Q13395 1621 aaKnown RBP21.13■□□□□ 0.97
CDK5RAP3-202ENST00000536708 CUX2O14529 1486 aa21.12■□□□□ 0.97
CDK5RAP3-202ENST00000536708 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
CDK5RAP3-202ENST00000536708 EEA1Q15075 1411 aa21.07■□□□□ 0.96
CDK5RAP3-202ENST00000536708 EHMT2Q96KQ7 1210 aa21.05■□□□□ 0.96
CDK5RAP3-202ENST00000536708 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
CDK5RAP3-202ENST00000536708 ABCA5Q8WWZ7 1642 aa21.04■□□□□ 0.96
CDK5RAP3-202ENST00000536708 LOC105371045A0A1W2PR82 267 aa21.03■□□□□ 0.96
CDK5RAP3-202ENST00000536708 IFT140Q96RY7 1462 aa20.98■□□□□ 0.95
CDK5RAP3-202ENST00000536708 TDRD9Q8NDG6 1382 aaKnown RBP20.98■□□□□ 0.95
CDK5RAP3-202ENST00000536708 ZNF608Q9ULD9 1512 aaPredicted RBP20.97■□□□□ 0.95
CDK5RAP3-202ENST00000536708 CSRNP3Q8WYN3 585 aa20.97■□□□□ 0.95
CDK5RAP3-202ENST00000536708 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
CDK5RAP3-202ENST00000536708 EIF4G3O43432 1585 aaKnown RBP20.95■□□□□ 0.94
CDK5RAP3-202ENST00000536708 KIF21BO75037 1637 aa20.94■□□□□ 0.94
CDK5RAP3-202ENST00000536708 AQRO60306 1485 aaKnown RBP eCLIP20.92■□□□□ 0.941e-7■■■■□ 24.7
CDK5RAP3-202ENST00000536708 GAPVD1Q14C86 1478 aa20.92■□□□□ 0.94
CDK5RAP3-202ENST00000536708 RAPGEF2Q9Y4G8 1499 aa20.88■□□□□ 0.93
CDK5RAP3-202ENST00000536708 IGF1RP08069 1367 aa20.87■□□□□ 0.93
CDK5RAP3-202ENST00000536708 PRXQ9BXM0 1461 aa20.87■□□□□ 0.93
CDK5RAP3-202ENST00000536708 GOLGA3Q08378 1498 aa20.85■□□□□ 0.93
CDK5RAP3-202ENST00000536708 CUL7Q14999 1698 aa20.85■□□□□ 0.93
CDK5RAP3-202ENST00000536708 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
CDK5RAP3-202ENST00000536708 ADAMTS12P58397 1594 aa20.78■□□□□ 0.92
CDK5RAP3-202ENST00000536708 GRIN2BQ13224 1484 aa20.78■□□□□ 0.92
CDK5RAP3-202ENST00000536708 CARMIL1Q5VZK9 1371 aa20.77■□□□□ 0.91
CDK5RAP3-202ENST00000536708 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
CDK5RAP3-202ENST00000536708 UBTFP17480 764 aaKnown RBP20.71■□□□□ 0.91
CDK5RAP3-202ENST00000536708 TNIKQ9UKE5 1360 aa20.67■□□□□ 0.9
CDK5RAP3-202ENST00000536708 CTTNBP2Q8WZ74 1663 aa20.66■□□□□ 0.9
CDK5RAP3-202ENST00000536708 FHAD1B1AJZ9 1412 aa20.64■□□□□ 0.9
CDK5RAP3-202ENST00000536708 HRCP23327 699 aa20.64■□□□□ 0.89
CDK5RAP3-202ENST00000536708 MAGI1Q96QZ7 1491 aaPredicted RBP20.64■□□□□ 0.89
CDK5RAP3-202ENST00000536708 CEP162Q5TB80 1403 aa20.63■□□□□ 0.89
CDK5RAP3-202ENST00000536708 CHD1O14646 1710 aa20.59■□□□□ 0.89
CDK5RAP3-202ENST00000536708 SYNJ2O15056 1496 aa20.57■□□□□ 0.88
CDK5RAP3-202ENST00000536708 GRIN2AQ12879 1464 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms