RNA–Protein interactions for RNA: ENST00000536295.1

RTN3P1-201, Transcript of reticulon 3 pseudogene 1, humanhuman

BASIC

Gene RTN3P1, Length 711 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3P1-201ENST00000536295 NISCHQ9Y2I1 1504 aa35.31■■■■□ 3.24
RTN3P1-201ENST00000536295 CCDC180Q9P1Z9 1646 aa31.53■■■□□ 2.64
RTN3P1-201ENST00000536295 ABCC9O60706 1549 aa31.36■■■□□ 2.61
RTN3P1-201ENST00000536295 RB1CC1Q8TDY2 1594 aa29.91■■■□□ 2.38
RTN3P1-201ENST00000536295 DCAF8L2P0C7V8 631 aa29.81■■■□□ 2.36
RTN3P1-201ENST00000536295 NACADO15069 1562 aa29.75■■■□□ 2.35
RTN3P1-201ENST00000536295 MYO15BQ96JP2 1530 aa29.39■■■□□ 2.3
RTN3P1-201ENST00000536295 ZCCHC6Q5VYS8 1495 aaKnown RBP29.31■■■□□ 2.28
RTN3P1-201ENST00000536295 PABPN1Q86U42 306 aaKnown RBP eCLIP29.27■■■□□ 2.28
RTN3P1-201ENST00000536295 UNC13AQ9UPW8 1703 aa29.22■■■□□ 2.27
RTN3P1-201ENST00000536295 DNAJC5BQ9UF47 199 aa29.16■■■□□ 2.26
RTN3P1-201ENST00000536295 DCAF1Q9Y4B6 1507 aa29.13■■■□□ 2.25
RTN3P1-201ENST00000536295 BICRAQ9NZM4 1560 aa29.02■■■□□ 2.24
RTN3P1-201ENST00000536295 SCRIBQ14160 1630 aa28.83■■■□□ 2.21
RTN3P1-201ENST00000536295 SHROOM4Q9ULL8 1493 aa28.61■■■□□ 2.17
RTN3P1-201ENST00000536295 CC2D2AQ9P2K1 1620 aa28.3■■■□□ 2.12
RTN3P1-201ENST00000536295 EIF4G1Q04637 1599 aaKnown RBP28.3■■■□□ 2.12
RTN3P1-201ENST00000536295 CECR2Q9BXF3 1484 aa28.2■■■□□ 2.1
RTN3P1-201ENST00000536295 SMARCA4P51532 1647 aa27.49■■□□□ 1.99
RTN3P1-201ENST00000536295 NCAPD3P42695 1498 aa27.46■■□□□ 1.99
RTN3P1-201ENST00000536295 ATAD2BQ9ULI0 1458 aa27.44■■□□□ 1.98
RTN3P1-201ENST00000536295 BAZ1AQ9NRL2 1556 aaPredicted RBP27.39■■□□□ 1.97
RTN3P1-201ENST00000536295 SMARCA2P51531 1590 aa27.37■■□□□ 1.97
RTN3P1-201ENST00000536295 HMGXB3Q12766 1538 aa27.29■■□□□ 1.96
RTN3P1-201ENST00000536295 MROH2BQ7Z745 1585 aa27.23■■□□□ 1.95
RTN3P1-201ENST00000536295 BAZ1BQ9UIG0 1483 aaKnown RBP27.22■■□□□ 1.95
RTN3P1-201ENST00000536295 PEG3Q9GZU2 1588 aa27.17■■□□□ 1.94
RTN3P1-201ENST00000536295 ERCC6Q03468 1493 aa27.06■■□□□ 1.92
RTN3P1-201ENST00000536295 NESP48681 1621 aa27.01■■□□□ 1.91
RTN3P1-201ENST00000536295 WIZO95785 1651 aa26.92■■□□□ 1.9
RTN3P1-201ENST00000536295 CUX2O14529 1486 aa26.85■■□□□ 1.89
RTN3P1-201ENST00000536295 LAMC3Q9Y6N6 1575 aa26.81■■□□□ 1.88
RTN3P1-201ENST00000536295 RSF1Q96T23 1441 aaPredicted RBP26.76■■□□□ 1.87
RTN3P1-201ENST00000536295 CADPSQ9ULU8 1353 aa26.68■■□□□ 1.86
RTN3P1-201ENST00000536295 PDS5BQ9NTI5 1447 aa26.67■■□□□ 1.86
RTN3P1-201ENST00000536295 KIF21AQ7Z4S6 1674 aa26.64■■□□□ 1.86
RTN3P1-201ENST00000536295 THOC2Q8NI27 1593 aaKnown RBP26.63■■□□□ 1.85
RTN3P1-201ENST00000536295 TOP2AP11388 1531 aaKnown RBP26.59■■□□□ 1.85
RTN3P1-201ENST00000536295 DNAJC5Q9H3Z4 198 aa26.54■■□□□ 1.84
RTN3P1-201ENST00000536295 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
RTN3P1-201ENST00000536295 CFTRP13569 1480 aa26.41■■□□□ 1.82
RTN3P1-201ENST00000536295 FANCD2Q9BXW9 1451 aa26.38■■□□□ 1.81
RTN3P1-201ENST00000536295 CEP164Q9UPV0 1460 aa26.38■■□□□ 1.81
RTN3P1-201ENST00000536295 WDR62O43379 1518 aa26.33■■□□□ 1.81
RTN3P1-201ENST00000536295 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
RTN3P1-201ENST00000536295 URB2Q14146 1524 aaKnown RBP26.14■■□□□ 1.78
RTN3P1-201ENST00000536295 PRDM2Q13029 1718 aa26.14■■□□□ 1.78
RTN3P1-201ENST00000536295 TOPBP1Q92547 1522 aa25.91■■□□□ 1.74
RTN3P1-201ENST00000536295 SUPT5HO00267 1087 aaKnown RBP25.88■■□□□ 1.73
RTN3P1-201ENST00000536295 ABCC8Q09428 1581 aa25.84■■□□□ 1.73
RTN3P1-201ENST00000536295 IFT140Q96RY7 1462 aa25.84■■□□□ 1.73
RTN3P1-201ENST00000536295 DNMBPQ6XZF7 1577 aa25.83■■□□□ 1.73
RTN3P1-201ENST00000536295 ZNF608Q9ULD9 1512 aaPredicted RBP25.79■■□□□ 1.72
RTN3P1-201ENST00000536295 OSCARQ8IYS5 282 aa25.71■■□□□ 1.71
RTN3P1-201ENST00000536295 POLA1P09884 1462 aaPredicted RBP25.66■■□□□ 1.7
RTN3P1-201ENST00000536295 EIF4G3O43432 1585 aaKnown RBP25.65■■□□□ 1.7
RTN3P1-201ENST00000536295 TARBP1Q13395 1621 aaKnown RBP25.63■■□□□ 1.69
RTN3P1-201ENST00000536295 AQRO60306 1485 aaKnown RBP eCLIP25.6■■□□□ 1.69
RTN3P1-201ENST00000536295 RAD54L2Q9Y4B4 1467 aa25.6■■□□□ 1.69
RTN3P1-201ENST00000536295 TRIM41Q8WV44 630 aa25.59■■□□□ 1.69
RTN3P1-201ENST00000536295 CUX1P39880 1505 aa25.57■■□□□ 1.68
RTN3P1-201ENST00000536295 SOGA1O94964 1423 aa25.56■■□□□ 1.68
RTN3P1-201ENST00000536295 FGD5Q6ZNL6 1462 aa25.55■■□□□ 1.68
RTN3P1-201ENST00000536295 TDRD9Q8NDG6 1382 aaKnown RBP25.5■■□□□ 1.67
RTN3P1-201ENST00000536295 FBLN2P98095 1184 aa25.44■■□□□ 1.66
RTN3P1-201ENST00000536295 CHD1O14646 1710 aa25.4■■□□□ 1.66
RTN3P1-201ENST00000536295 WDR97A6NE52 1622 aa25.36■■□□□ 1.65
RTN3P1-201ENST00000536295 SNAPC4Q5SXM2 1469 aa25.35■■□□□ 1.65
RTN3P1-201ENST00000536295 RIMBP3CA6NJZ7 1639 aa25.34■■□□□ 1.65
RTN3P1-201ENST00000536295 RIMBP3BA6NNM3 1639 aa25.34■■□□□ 1.65
RTN3P1-201ENST00000536295 RIMBP3Q9UFD9 1639 aa25.34■■□□□ 1.65
RTN3P1-201ENST00000536295 GRIN2BQ13224 1484 aa25.29■■□□□ 1.64
RTN3P1-201ENST00000536295 ARHGEF11O15085 1522 aa25.28■■□□□ 1.64
RTN3P1-201ENST00000536295 CHMP7Q8WUX9 453 aaPredicted RBP25.26■■□□□ 1.63
RTN3P1-201ENST00000536295 WRNQ14191 1432 aaPredicted RBP eCLIP25.26■■□□□ 1.63
RTN3P1-201ENST00000536295 MAGI1Q96QZ7 1491 aaPredicted RBP25.26■■□□□ 1.63
RTN3P1-201ENST00000536295 GAPVD1Q14C86 1478 aa25.25■■□□□ 1.63
RTN3P1-201ENST00000536295 ABCA10Q8WWZ4 1543 aa25.25■■□□□ 1.63
RTN3P1-201ENST00000536295 SYNJ1O43426 1573 aa25.22■■□□□ 1.63
RTN3P1-201ENST00000536295 PBRM1Q86U86 1689 aa25.21■■□□□ 1.63
RTN3P1-201ENST00000536295 TOP2BQ02880 1626 aa25.21■■□□□ 1.63
RTN3P1-201ENST00000536295 BIVM-ERCC5R4GMW8 1640 aa25.2■■□□□ 1.62
RTN3P1-201ENST00000536295 ABCA5Q8WWZ7 1642 aa25.19■■□□□ 1.62
RTN3P1-201ENST00000536295 SYNJ2O15056 1496 aa25.18■■□□□ 1.62
RTN3P1-201ENST00000536295 CYB5RLQ6IPT4 315 aa25.13■■□□□ 1.61
RTN3P1-201ENST00000536295 CLASP1Q7Z460 1538 aa25.1■■□□□ 1.61
RTN3P1-201ENST00000536295 ARAP1Q96P48 1450 aa25.06■■□□□ 1.6
RTN3P1-201ENST00000536295 ADAMTS12P58397 1594 aa24.99■■□□□ 1.59
RTN3P1-201ENST00000536295 GRIN2AQ12879 1464 aa24.97■■□□□ 1.59
RTN3P1-201ENST00000536295 FHAD1B1AJZ9 1412 aa24.94■■□□□ 1.58
RTN3P1-201ENST00000536295 ERICH3Q5RHP9 1530 aa24.93■■□□□ 1.58
RTN3P1-201ENST00000536295 CEP170Q5SW79 1584 aa24.88■■□□□ 1.57
RTN3P1-201ENST00000536295 NUP160Q12769 1436 aa24.86■■□□□ 1.57
RTN3P1-201ENST00000536295 TRHP20396 242 aaPredicted RBP24.79■■□□□ 1.56
RTN3P1-201ENST00000536295 ERCC6L2Q5T890 1561 aa24.77■■□□□ 1.56
RTN3P1-201ENST00000536295 KIF27Q86VH2 1401 aa24.75■■□□□ 1.55
RTN3P1-201ENST00000536295 IGF1RP08069 1367 aa24.7■■□□□ 1.55
RTN3P1-201ENST00000536295 SHROOM2Q13796 1616 aa24.7■■□□□ 1.54
RTN3P1-201ENST00000536295 PRG4Q92954 1404 aaPredicted RBP24.64■■□□□ 1.54
RTN3P1-201ENST00000536295 JPH4Q96JJ6 628 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms