RNA–Protein interactions for RNA: ENST00000536194.1

TNFRSF1A-208, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 581 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-208ENST00000536194 NISCHQ9Y2I1 1504 aa27.53■■■□□ 2
TNFRSF1A-208ENST00000536194 CCDC180Q9P1Z9 1646 aa24.46■■□□□ 1.51
TNFRSF1A-208ENST00000536194 ABCC9O60706 1549 aa23.81■■□□□ 1.4
TNFRSF1A-208ENST00000536194 ZCCHC6Q5VYS8 1495 aaKnown RBP22.97■■□□□ 1.27
TNFRSF1A-208ENST00000536194 RB1CC1Q8TDY2 1594 aa22.93■■□□□ 1.26
TNFRSF1A-208ENST00000536194 NACADO15069 1562 aa22.93■■□□□ 1.26
TNFRSF1A-208ENST00000536194 DCAF8L2P0C7V8 631 aa22.86■■□□□ 1.25
TNFRSF1A-208ENST00000536194 MYO15BQ96JP2 1530 aa22.82■■□□□ 1.24
TNFRSF1A-208ENST00000536194 DCAF1Q9Y4B6 1507 aa22.77■■□□□ 1.24
TNFRSF1A-208ENST00000536194 UNC13AQ9UPW8 1703 aa22.54■■□□□ 1.2
TNFRSF1A-208ENST00000536194 SCRIBQ14160 1630 aa22.33■■□□□ 1.17
TNFRSF1A-208ENST00000536194 BICRAQ9NZM4 1560 aa22.31■■□□□ 1.16
TNFRSF1A-208ENST00000536194 PABPN1Q86U42 306 aaKnown RBP eCLIP22.23■■□□□ 1.15
TNFRSF1A-208ENST00000536194 SHROOM4Q9ULL8 1493 aa21.99■■□□□ 1.11
TNFRSF1A-208ENST00000536194 DNAJC5BQ9UF47 199 aa21.77■■□□□ 1.08
TNFRSF1A-208ENST00000536194 EIF4G1Q04637 1599 aaKnown RBP21.67■■□□□ 1.06
TNFRSF1A-208ENST00000536194 CC2D2AQ9P2K1 1620 aa21.57■■□□□ 1.04
TNFRSF1A-208ENST00000536194 CECR2Q9BXF3 1484 aa21.46■■□□□ 1.03
TNFRSF1A-208ENST00000536194 SMARCA4P51532 1647 aa21.37■■□□□ 1.01
TNFRSF1A-208ENST00000536194 BAZ1AQ9NRL2 1556 aaPredicted RBP21.31■■□□□ 1
TNFRSF1A-208ENST00000536194 MROH2BQ7Z745 1585 aa21.25■□□□□ 0.99
TNFRSF1A-208ENST00000536194 ATAD2BQ9ULI0 1458 aa21.2■□□□□ 0.98
TNFRSF1A-208ENST00000536194 SMARCA2P51531 1590 aa21.15■□□□□ 0.98
TNFRSF1A-208ENST00000536194 PEG3Q9GZU2 1588 aa21.14■□□□□ 0.98
TNFRSF1A-208ENST00000536194 NCAPD3P42695 1498 aa21.14■□□□□ 0.98
TNFRSF1A-208ENST00000536194 HMGXB3Q12766 1538 aa21.09■□□□□ 0.97
TNFRSF1A-208ENST00000536194 WIZO95785 1651 aa21.05■□□□□ 0.96
TNFRSF1A-208ENST00000536194 RSF1Q96T23 1441 aaPredicted RBP21.01■□□□□ 0.95
TNFRSF1A-208ENST00000536194 BAZ1BQ9UIG0 1483 aaKnown RBP21.01■□□□□ 0.95
TNFRSF1A-208ENST00000536194 TOP2AP11388 1531 aaKnown RBP20.78■□□□□ 0.92
TNFRSF1A-208ENST00000536194 NESP48681 1621 aa20.67■□□□□ 0.9
TNFRSF1A-208ENST00000536194 LAMC3Q9Y6N6 1575 aa20.59■□□□□ 0.89
TNFRSF1A-208ENST00000536194 CCDC88BA6NC98 1476 aa20.53■□□□□ 0.88
TNFRSF1A-208ENST00000536194 CADPSQ9ULU8 1353 aa20.52■□□□□ 0.88
TNFRSF1A-208ENST00000536194 SUPT5HO00267 1087 aaKnown RBP20.48■□□□□ 0.87
TNFRSF1A-208ENST00000536194 ERCC6Q03468 1493 aa20.47■□□□□ 0.87
TNFRSF1A-208ENST00000536194 KIF21AQ7Z4S6 1674 aa20.46■□□□□ 0.87
TNFRSF1A-208ENST00000536194 CFTRP13569 1480 aa20.45■□□□□ 0.86
TNFRSF1A-208ENST00000536194 PDS5BQ9NTI5 1447 aa20.39■□□□□ 0.85
TNFRSF1A-208ENST00000536194 PRDM2Q13029 1718 aa20.39■□□□□ 0.85
TNFRSF1A-208ENST00000536194 THOC2Q8NI27 1593 aaKnown RBP20.35■□□□□ 0.85
TNFRSF1A-208ENST00000536194 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
TNFRSF1A-208ENST00000536194 CEP164Q9UPV0 1460 aa20.26■□□□□ 0.83
TNFRSF1A-208ENST00000536194 CUX2O14529 1486 aa20.24■□□□□ 0.83
TNFRSF1A-208ENST00000536194 MRC2Q9UBG0 1479 aa20.22■□□□□ 0.83
TNFRSF1A-208ENST00000536194 WDR62O43379 1518 aa20.18■□□□□ 0.82
TNFRSF1A-208ENST00000536194 URB2Q14146 1524 aaKnown RBP20.14■□□□□ 0.81
TNFRSF1A-208ENST00000536194 TOPBP1Q92547 1522 aa20.02■□□□□ 0.79
TNFRSF1A-208ENST00000536194 DNMBPQ6XZF7 1577 aa20■□□□□ 0.79
TNFRSF1A-208ENST00000536194 ABCC8Q09428 1581 aa19.95■□□□□ 0.78
TNFRSF1A-208ENST00000536194 CUX1P39880 1505 aa19.92■□□□□ 0.78
TNFRSF1A-208ENST00000536194 POLA1P09884 1462 aaPredicted RBP19.85■□□□□ 0.77
TNFRSF1A-208ENST00000536194 IFT140Q96RY7 1462 aa19.83■□□□□ 0.76
TNFRSF1A-208ENST00000536194 TARBP1Q13395 1621 aaKnown RBP19.83■□□□□ 0.76
TNFRSF1A-208ENST00000536194 FGD5Q6ZNL6 1462 aa19.81■□□□□ 0.76
TNFRSF1A-208ENST00000536194 BIVM-ERCC5R4GMW8 1640 aa19.8■□□□□ 0.76
TNFRSF1A-208ENST00000536194 SYNJ1O43426 1573 aa19.79■□□□□ 0.76
TNFRSF1A-208ENST00000536194 WRNQ14191 1432 aaPredicted RBP eCLIP19.78■□□□□ 0.76
TNFRSF1A-208ENST00000536194 ZNF608Q9ULD9 1512 aaPredicted RBP19.78■□□□□ 0.76
TNFRSF1A-208ENST00000536194 TOP2BQ02880 1626 aa19.77■□□□□ 0.76
TNFRSF1A-208ENST00000536194 RAD54L2Q9Y4B4 1467 aa19.77■□□□□ 0.76
TNFRSF1A-208ENST00000536194 EIF4G3O43432 1585 aaKnown RBP19.73■□□□□ 0.75
TNFRSF1A-208ENST00000536194 WDR97A6NE52 1622 aa19.73■□□□□ 0.75
TNFRSF1A-208ENST00000536194 SOGA1O94964 1423 aa19.72■□□□□ 0.75
TNFRSF1A-208ENST00000536194 AQRO60306 1485 aaKnown RBP eCLIP19.65■□□□□ 0.741e-6■■■■■ 40.2
TNFRSF1A-208ENST00000536194 ABCA10Q8WWZ4 1543 aa19.62■□□□□ 0.73
TNFRSF1A-208ENST00000536194 TDRD9Q8NDG6 1382 aaKnown RBP19.62■□□□□ 0.73
TNFRSF1A-208ENST00000536194 ABCA5Q8WWZ7 1642 aa19.58■□□□□ 0.72
TNFRSF1A-208ENST00000536194 PBRM1Q86U86 1689 aa19.55■□□□□ 0.72
TNFRSF1A-208ENST00000536194 GAPVD1Q14C86 1478 aa19.52■□□□□ 0.72
TNFRSF1A-208ENST00000536194 GRIN2BQ13224 1484 aa19.49■□□□□ 0.71
TNFRSF1A-208ENST00000536194 SNAPC4Q5SXM2 1469 aa19.48■□□□□ 0.71
TNFRSF1A-208ENST00000536194 CHD1O14646 1710 aa19.48■□□□□ 0.71
TNFRSF1A-208ENST00000536194 DNAJC5Q9H3Z4 198 aa19.47■□□□□ 0.71
TNFRSF1A-208ENST00000536194 MAGI1Q96QZ7 1491 aaPredicted RBP19.44■□□□□ 0.7
TNFRSF1A-208ENST00000536194 ERICH3Q5RHP9 1530 aa19.38■□□□□ 0.69
TNFRSF1A-208ENST00000536194 ADAMTS12P58397 1594 aa19.37■□□□□ 0.69
TNFRSF1A-208ENST00000536194 SYNJ2O15056 1496 aa19.36■□□□□ 0.69
TNFRSF1A-208ENST00000536194 OSCARQ8IYS5 282 aa19.36■□□□□ 0.69
TNFRSF1A-208ENST00000536194 FBLN2P98095 1184 aa19.33■□□□□ 0.68
TNFRSF1A-208ENST00000536194 KIF27Q86VH2 1401 aa19.33■□□□□ 0.68
TNFRSF1A-208ENST00000536194 TRIM41Q8WV44 630 aa19.31■□□□□ 0.68
TNFRSF1A-208ENST00000536194 CHMP7Q8WUX9 453 aaPredicted RBP19.29■□□□□ 0.68
TNFRSF1A-208ENST00000536194 FHAD1B1AJZ9 1412 aa19.28■□□□□ 0.68
TNFRSF1A-208ENST00000536194 RUSC2Q8N2Y8 1516 aa19.27■□□□□ 0.68
TNFRSF1A-208ENST00000536194 IGF1RP08069 1367 aa19.27■□□□□ 0.68
TNFRSF1A-208ENST00000536194 GRIN2AQ12879 1464 aa19.26■□□□□ 0.67
TNFRSF1A-208ENST00000536194 CLASP1Q7Z460 1538 aa19.25■□□□□ 0.67
TNFRSF1A-208ENST00000536194 CUL7Q14999 1698 aa19.24■□□□□ 0.67
TNFRSF1A-208ENST00000536194 CEP170Q5SW79 1584 aa19.21■□□□□ 0.67
TNFRSF1A-208ENST00000536194 CHIC1Q5VXU3 224 aa19.2■□□□□ 0.66
TNFRSF1A-208ENST00000536194 NUP160Q12769 1436 aa19.18■□□□□ 0.66
TNFRSF1A-208ENST00000536194 RIMBP3CA6NJZ7 1639 aa19.15■□□□□ 0.66
TNFRSF1A-208ENST00000536194 RIMBP3BA6NNM3 1639 aa19.15■□□□□ 0.66
TNFRSF1A-208ENST00000536194 RIMBP3Q9UFD9 1639 aa19.15■□□□□ 0.66
TNFRSF1A-208ENST00000536194 CARMIL1Q5VZK9 1371 aa19.14■□□□□ 0.65
TNFRSF1A-208ENST00000536194 ARHGEF11O15085 1522 aa19.13■□□□□ 0.65
TNFRSF1A-208ENST00000536194 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
TNFRSF1A-208ENST00000536194 RAPGEF2Q9Y4G8 1499 aa19.04■□□□□ 0.64
TNFRSF1A-208ENST00000536194 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms