RNA–Protein interactions for RNA: ENST00000535958.1

TNFRSF1A-207, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 4

Gene TNFRSF1A, Length 568 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-207ENST00000535958 NISCHQ9Y2I1 1504 aa32.53■■■□□ 2.8
TNFRSF1A-207ENST00000535958 ABCC9O60706 1549 aa29.42■■■□□ 2.3
TNFRSF1A-207ENST00000535958 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
TNFRSF1A-207ENST00000535958 RB1CC1Q8TDY2 1594 aa27.99■■■□□ 2.07
TNFRSF1A-207ENST00000535958 NACADO15069 1562 aa27.73■■■□□ 2.03
TNFRSF1A-207ENST00000535958 DCAF8L2P0C7V8 631 aa27.6■■■□□ 2.01
TNFRSF1A-207ENST00000535958 DNAJC5BQ9UF47 199 aa27.55■■■□□ 2
TNFRSF1A-207ENST00000535958 PABPN1Q86U42 306 aaKnown RBP eCLIP27.33■■□□□ 1.97
TNFRSF1A-207ENST00000535958 UNC13AQ9UPW8 1703 aa27.28■■□□□ 1.96
TNFRSF1A-207ENST00000535958 MYO15BQ96JP2 1530 aa27.26■■□□□ 1.96
TNFRSF1A-207ENST00000535958 BICRAQ9NZM4 1560 aa27.05■■□□□ 1.92
TNFRSF1A-207ENST00000535958 ZCCHC6Q5VYS8 1495 aaKnown RBP26.94■■□□□ 1.9
TNFRSF1A-207ENST00000535958 DCAF1Q9Y4B6 1507 aa26.86■■□□□ 1.89
TNFRSF1A-207ENST00000535958 SHROOM4Q9ULL8 1493 aa26.8■■□□□ 1.88
TNFRSF1A-207ENST00000535958 SCRIBQ14160 1630 aa26.71■■□□□ 1.87
TNFRSF1A-207ENST00000535958 CC2D2AQ9P2K1 1620 aa26.56■■□□□ 1.84
TNFRSF1A-207ENST00000535958 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
TNFRSF1A-207ENST00000535958 EIF4G1Q04637 1599 aaKnown RBP26.48■■□□□ 1.83
TNFRSF1A-207ENST00000535958 NCAPD3P42695 1498 aa25.54■■□□□ 1.68
TNFRSF1A-207ENST00000535958 ERCC6Q03468 1493 aa25.5■■□□□ 1.67
TNFRSF1A-207ENST00000535958 DNAJC5Q9H3Z4 198 aa25.48■■□□□ 1.67
TNFRSF1A-207ENST00000535958 ATAD2BQ9ULI0 1458 aa25.46■■□□□ 1.67
TNFRSF1A-207ENST00000535958 SMARCA2P51531 1590 aa25.45■■□□□ 1.66
TNFRSF1A-207ENST00000535958 SMARCA4P51532 1647 aa25.45■■□□□ 1.66
TNFRSF1A-207ENST00000535958 CUX2O14529 1486 aa25.44■■□□□ 1.66
TNFRSF1A-207ENST00000535958 HMGXB3Q12766 1538 aa25.41■■□□□ 1.66
TNFRSF1A-207ENST00000535958 BAZ1AQ9NRL2 1556 aaPredicted RBP25.32■■□□□ 1.64
TNFRSF1A-207ENST00000535958 BAZ1BQ9UIG0 1483 aaKnown RBP25.28■■□□□ 1.64
TNFRSF1A-207ENST00000535958 NESP48681 1621 aa25.19■■□□□ 1.62
TNFRSF1A-207ENST00000535958 PEG3Q9GZU2 1588 aa25.16■■□□□ 1.62
TNFRSF1A-207ENST00000535958 LAMC3Q9Y6N6 1575 aa25.06■■□□□ 1.6
TNFRSF1A-207ENST00000535958 MROH2BQ7Z745 1585 aa25.05■■□□□ 1.6
TNFRSF1A-207ENST00000535958 THOC2Q8NI27 1593 aaKnown RBP25■■□□□ 1.59
TNFRSF1A-207ENST00000535958 PDS5BQ9NTI5 1447 aa24.94■■□□□ 1.58
TNFRSF1A-207ENST00000535958 KIF21AQ7Z4S6 1674 aa24.92■■□□□ 1.58
TNFRSF1A-207ENST00000535958 CADPSQ9ULU8 1353 aa24.79■■□□□ 1.56
TNFRSF1A-207ENST00000535958 WIZO95785 1651 aa24.77■■□□□ 1.56
TNFRSF1A-207ENST00000535958 MRC2Q9UBG0 1479 aa24.72■■□□□ 1.55
TNFRSF1A-207ENST00000535958 WDR62O43379 1518 aa24.64■■□□□ 1.53
TNFRSF1A-207ENST00000535958 CEP164Q9UPV0 1460 aa24.62■■□□□ 1.53
TNFRSF1A-207ENST00000535958 FANCD2Q9BXW9 1451 aa24.54■■□□□ 1.52
TNFRSF1A-207ENST00000535958 TOP2AP11388 1531 aaKnown RBP24.48■■□□□ 1.51
TNFRSF1A-207ENST00000535958 CFTRP13569 1480 aa24.47■■□□□ 1.51
TNFRSF1A-207ENST00000535958 RSF1Q96T23 1441 aaPredicted RBP24.47■■□□□ 1.51
TNFRSF1A-207ENST00000535958 TRIM41Q8WV44 630 aa24.43■■□□□ 1.5
TNFRSF1A-207ENST00000535958 URB2Q14146 1524 aaKnown RBP24.3■■□□□ 1.48
TNFRSF1A-207ENST00000535958 PRDM2Q13029 1718 aa24.29■■□□□ 1.48
TNFRSF1A-207ENST00000535958 OSCARQ8IYS5 282 aa24.23■■□□□ 1.47
TNFRSF1A-207ENST00000535958 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
TNFRSF1A-207ENST00000535958 IFT140Q96RY7 1462 aa24.11■■□□□ 1.45
TNFRSF1A-207ENST00000535958 TOPBP1Q92547 1522 aa24.04■■□□□ 1.44
TNFRSF1A-207ENST00000535958 ABCC8Q09428 1581 aa24.03■■□□□ 1.44
TNFRSF1A-207ENST00000535958 ZNF608Q9ULD9 1512 aaPredicted RBP24.02■■□□□ 1.44
TNFRSF1A-207ENST00000535958 DNMBPQ6XZF7 1577 aa23.98■■□□□ 1.43
TNFRSF1A-207ENST00000535958 EIF4G3O43432 1585 aaKnown RBP23.95■■□□□ 1.43
TNFRSF1A-207ENST00000535958 RIMBP3CA6NJZ7 1639 aa23.93■■□□□ 1.42
TNFRSF1A-207ENST00000535958 RIMBP3BA6NNM3 1639 aa23.93■■□□□ 1.42
TNFRSF1A-207ENST00000535958 RIMBP3Q9UFD9 1639 aa23.93■■□□□ 1.42
TNFRSF1A-207ENST00000535958 ARHGEF11O15085 1522 aa23.85■■□□□ 1.41
TNFRSF1A-207ENST00000535958 TARBP1Q13395 1621 aaKnown RBP23.81■■□□□ 1.4
TNFRSF1A-207ENST00000535958 AQRO60306 1485 aaKnown RBP eCLIP23.8■■□□□ 1.41e-6■■■■■ 40.2
TNFRSF1A-207ENST00000535958 CHD1O14646 1710 aa23.79■■□□□ 1.4
TNFRSF1A-207ENST00000535958 POLA1P09884 1462 aaPredicted RBP23.79■■□□□ 1.4
TNFRSF1A-207ENST00000535958 FBLN2P98095 1184 aa23.76■■□□□ 1.39
TNFRSF1A-207ENST00000535958 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
TNFRSF1A-207ENST00000535958 SOGA1O94964 1423 aa23.68■■□□□ 1.38
TNFRSF1A-207ENST00000535958 CYB5RLQ6IPT4 315 aa23.67■■□□□ 1.38
TNFRSF1A-207ENST00000535958 WDR97A6NE52 1622 aa23.65■■□□□ 1.38
TNFRSF1A-207ENST00000535958 TDRD9Q8NDG6 1382 aaKnown RBP23.64■■□□□ 1.37
TNFRSF1A-207ENST00000535958 FGD5Q6ZNL6 1462 aa23.63■■□□□ 1.37
TNFRSF1A-207ENST00000535958 SNAPC4Q5SXM2 1469 aa23.6■■□□□ 1.37
TNFRSF1A-207ENST00000535958 ARAP1Q96P48 1450 aa23.58■■□□□ 1.37
TNFRSF1A-207ENST00000535958 CUX1P39880 1505 aa23.55■■□□□ 1.36
TNFRSF1A-207ENST00000535958 CHMP7Q8WUX9 453 aaPredicted RBP23.54■■□□□ 1.36
TNFRSF1A-207ENST00000535958 MAGI1Q96QZ7 1491 aaPredicted RBP23.54■■□□□ 1.36
TNFRSF1A-207ENST00000535958 SYNJ1O43426 1573 aa23.53■■□□□ 1.36
TNFRSF1A-207ENST00000535958 TRHP20396 242 aaPredicted RBP23.53■■□□□ 1.36
TNFRSF1A-207ENST00000535958 GRIN2BQ13224 1484 aa23.52■■□□□ 1.36
TNFRSF1A-207ENST00000535958 CLASP1Q7Z460 1538 aa23.47■■□□□ 1.35
TNFRSF1A-207ENST00000535958 SYNJ2O15056 1496 aa23.46■■□□□ 1.35
TNFRSF1A-207ENST00000535958 PBRM1Q86U86 1689 aa23.44■■□□□ 1.34
TNFRSF1A-207ENST00000535958 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
TNFRSF1A-207ENST00000535958 SUPT5HO00267 1087 aaKnown RBP23.37■■□□□ 1.33
TNFRSF1A-207ENST00000535958 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
TNFRSF1A-207ENST00000535958 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.32
TNFRSF1A-207ENST00000535958 WRNQ14191 1432 aaPredicted RBP eCLIP23.26■■□□□ 1.31
TNFRSF1A-207ENST00000535958 GRIN2AQ12879 1464 aa23.21■■□□□ 1.31
TNFRSF1A-207ENST00000535958 ADAMTS12P58397 1594 aa23.18■■□□□ 1.3
TNFRSF1A-207ENST00000535958 TOP2BQ02880 1626 aa23.18■■□□□ 1.3
TNFRSF1A-207ENST00000535958 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
TNFRSF1A-207ENST00000535958 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
TNFRSF1A-207ENST00000535958 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
TNFRSF1A-207ENST00000535958 NUP160Q12769 1436 aa23.09■■□□□ 1.29
TNFRSF1A-207ENST00000535958 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.28
TNFRSF1A-207ENST00000535958 ERCC6L2Q5T890 1561 aa23.06■■□□□ 1.28
TNFRSF1A-207ENST00000535958 SHROOM2Q13796 1616 aa23.01■■□□□ 1.27
TNFRSF1A-207ENST00000535958 AEBP2Q6ZN18 517 aaPredicted RBP22.99■■□□□ 1.27
TNFRSF1A-207ENST00000535958 PRG4Q92954 1404 aaPredicted RBP22.92■■□□□ 1.26
TNFRSF1A-207ENST00000535958 RUSC2Q8N2Y8 1516 aa22.87■■□□□ 1.25
TNFRSF1A-207ENST00000535958 JPH4Q96JJ6 628 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms