RNA–Protein interactions for RNA: ENST00000535492.5

RAP1B-215, Transcript of RAP1B, member of RAS oncogene family, human

TSL 4

Gene RAP1B, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAP1B-215	ENST00000535492	NISCH	Q9Y2I1	1504 aa		59.6	■■■■■ 7.13
RAP1B-215	ENST00000535492	CCDC180	Q9P1Z9	1646 aa		53.57	■■■■■ 6.17
RAP1B-215	ENST00000535492	ABCC9	O60706	1549 aa		53.4	■■■■■ 6.14
RAP1B-215	ENST00000535492	RB1CC1	Q8TDY2	1594 aa		50.89	■■■■■ 5.74
RAP1B-215	ENST00000535492	NACAD	O15069	1562 aa		50.53	■■■■■ 5.68
RAP1B-215	ENST00000535492	DCAF8L2	P0C7V8	631 aa		50.24	■■■■■ 5.63
RAP1B-215	ENST00000535492	DNAJC5B	Q9UF47	199 aa		49.93	■■■■■ 5.58
RAP1B-215	ENST00000535492	UNC13A	Q9UPW8	1703 aa		49.91	■■■■■ 5.58
RAP1B-215	ENST00000535492	MYO15B	Q96JP2	1530 aa		49.81	■■■■■ 5.56
RAP1B-215	ENST00000535492	PABPN1	Q86U42	306 aa	Known RBP eCLIP	49.67	■■■■■ 5.54
RAP1B-215	ENST00000535492	ZCCHC6	Q5VYS8	1495 aa	Known RBP	49.44	■■■■■ 5.5
RAP1B-215	ENST00000535492	BICRA	Q9NZM4	1560 aa		49.41	■■■■■ 5.5
RAP1B-215	ENST00000535492	DCAF1	Q9Y4B6	1507 aa		49.22	■■■■■ 5.47
RAP1B-215	ENST00000535492	SCRIB	Q14160	1630 aa		48.81	■■■■■ 5.4
RAP1B-215	ENST00000535492	SHROOM4	Q9ULL8	1493 aa		48.69	■■■■■ 5.39
RAP1B-215	ENST00000535492	CC2D2A	Q9P2K1	1620 aa		48.29	■■■■■ 5.32
RAP1B-215	ENST00000535492	EIF4G1	Q04637	1599 aa	Known RBP	48.18	■■■■■ 5.3
RAP1B-215	ENST00000535492	CECR2	Q9BXF3	1484 aa		48.08	■■■■■ 5.29
RAP1B-215	ENST00000535492	NCAPD3	P42695	1498 aa		46.58	■■■■■ 5.05
RAP1B-215	ENST00000535492	SMARCA4	P51532	1647 aa		46.55	■■■■■ 5.04
RAP1B-215	ENST00000535492	ATAD2B	Q9ULI0	1458 aa		46.49	■■■■■ 5.03
RAP1B-215	ENST00000535492	SMARCA2	P51531	1590 aa		46.41	■■■■■ 5.02
RAP1B-215	ENST00000535492	HMGXB3	Q12766	1538 aa		46.33	■■■■■ 5.01
RAP1B-215	ENST00000535492	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	46.29	■■■■■ 5
RAP1B-215	ENST00000535492	ERCC6	Q03468	1493 aa		46.11	■■■■■ 4.97
RAP1B-215	ENST00000535492	BAZ1B	Q9UIG0	1483 aa	Known RBP	46.08	■■■■■ 4.97
RAP1B-215	ENST00000535492	PEG3	Q9GZU2	1588 aa		46.05	■■■■■ 4.96
RAP1B-215	ENST00000535492	CUX2	O14529	1486 aa		45.96	■■■■■ 4.95
RAP1B-215	ENST00000535492	MROH2B	Q7Z745	1585 aa		45.96	■■■■■ 4.95
RAP1B-215	ENST00000535492	NES	P48681	1621 aa		45.91	■■■■■ 4.94
RAP1B-215	ENST00000535492	DNAJC5	Q9H3Z4	198 aa		45.76	■■■■■ 4.92
RAP1B-215	ENST00000535492	LAMC3	Q9Y6N6	1575 aa		45.61	■■■■■ 4.89
RAP1B-215	ENST00000535492	THOC2	Q8NI27	1593 aa	Known RBP	45.49	■■■■■ 4.87
RAP1B-215	ENST00000535492	WIZ	O95785	1651 aa		45.48	■■■■■ 4.87
RAP1B-215	ENST00000535492	KIF21A	Q7Z4S6	1674 aa		45.44	■■■■■ 4.87
RAP1B-215	ENST00000535492	PDS5B	Q9NTI5	1447 aa		45.27	■■■■■ 4.84
RAP1B-215	ENST00000535492	CADPS	Q9ULU8	1353 aa		45.17	■■■■■ 4.82
RAP1B-215	ENST00000535492	RSF1	Q96T23	1441 aa	Predicted RBP	44.98	■■■■■ 4.79
RAP1B-215	ENST00000535492	MRC2	Q9UBG0	1479 aa		44.92	■■■■■ 4.78
RAP1B-215	ENST00000535492	TOP2A	P11388	1531 aa	Known RBP	44.85	■■■■■ 4.77
RAP1B-215	ENST00000535492	WDR62	O43379	1518 aa		44.84	■■■■■ 4.77
RAP1B-215	ENST00000535492	CEP164	Q9UPV0	1460 aa		44.78	■■■■■ 4.76
RAP1B-215	ENST00000535492	FANCD2	Q9BXW9	1451 aa		44.72	■■■■■ 4.75
RAP1B-215	ENST00000535492	CFTR	P13569	1480 aa		44.7	■■■■■ 4.75
RAP1B-215	ENST00000535492	PRDM2	Q13029	1718 aa		44.5	■■■■■ 4.71
RAP1B-215	ENST00000535492	URB2	Q14146	1524 aa	Known RBP	44.35	■■■■■ 4.69
RAP1B-215	ENST00000535492	CCDC88B	A6NC98	1476 aa		44.3	■■■■■ 4.68
RAP1B-215	ENST00000535492	TOPBP1	Q92547	1522 aa		43.89	■■■■■ 4.62
RAP1B-215	ENST00000535492	TRIM41	Q8WV44	630 aa		43.86	■■■■■ 4.61
RAP1B-215	ENST00000535492	IFT140	Q96RY7	1462 aa		43.84	■■■■■ 4.61
RAP1B-215	ENST00000535492	OSCAR	Q8IYS5	282 aa		43.81	■■■■■ 4.6
RAP1B-215	ENST00000535492	ZNF608	Q9ULD9	1512 aa	Predicted RBP	43.79	■■■■■ 4.6
RAP1B-215	ENST00000535492	DNMBP	Q6XZF7	1577 aa		43.77	■■■■■ 4.6
RAP1B-215	ENST00000535492	ABCC8	Q09428	1581 aa		43.76	■■■■■ 4.6
RAP1B-215	ENST00000535492	EIF4G3	O43432	1585 aa	Known RBP	43.63	■■■■■ 4.58
RAP1B-215	ENST00000535492	TARBP1	Q13395	1621 aa	Known RBP	43.54	■■■■■ 4.56
RAP1B-215	ENST00000535492	POLA1	P09884	1462 aa	Predicted RBP	43.45	■■■■■ 4.55
RAP1B-215	ENST00000535492	RIMBP3C	A6NJZ7	1639 aa		43.39	■■■■■ 4.54
RAP1B-215	ENST00000535492	RIMBP3B	A6NNM3	1639 aa		43.39	■■■■■ 4.54
RAP1B-215	ENST00000535492	RIMBP3	Q9UFD9	1639 aa		43.39	■■■■■ 4.54
RAP1B-215	ENST00000535492	AQR	O60306	1485 aa	Known RBP eCLIP	43.38	■■■■■ 4.54	1e-6	■■■■□ 26.1
RAP1B-215	ENST00000535492	CHD1	O14646	1710 aa		43.36	■■■■■ 4.53
RAP1B-215	ENST00000535492	RAD54L2	Q9Y4B4	1467 aa		43.28	■■■■■ 4.52
RAP1B-215	ENST00000535492	ARHGEF11	O15085	1522 aa		43.21	■■■■■ 4.51
RAP1B-215	ENST00000535492	SOGA1	O94964	1423 aa		43.21	■■■■■ 4.51
RAP1B-215	ENST00000535492	FGD5	Q6ZNL6	1462 aa		43.19	■■■■■ 4.51
RAP1B-215	ENST00000535492	CUX1	P39880	1505 aa		43.18	■■■■■ 4.5
RAP1B-215	ENST00000535492	TDRD9	Q8NDG6	1382 aa	Known RBP	43.11	■■■■■ 4.49
RAP1B-215	ENST00000535492	WDR97	A6NE52	1622 aa		43.08	■■■■■ 4.49
RAP1B-215	ENST00000535492	FBLN2	P98095	1184 aa		43.07	■■■■■ 4.49
RAP1B-215	ENST00000535492	SUPT5H	O00267	1087 aa	Known RBP	43.05	■■■■■ 4.48
RAP1B-215	ENST00000535492	SNAPC4	Q5SXM2	1469 aa		42.98	■■■■■ 4.47
RAP1B-215	ENST00000535492	MAGI1	Q96QZ7	1491 aa	Predicted RBP	42.86	■■■■■ 4.45
RAP1B-215	ENST00000535492	PBRM1	Q86U86	1689 aa		42.85	■■■■■ 4.45
RAP1B-215	ENST00000535492	GRIN2B	Q13224	1484 aa		42.84	■■■■■ 4.45
RAP1B-215	ENST00000535492	CYB5RL	Q6IPT4	315 aa		42.81	■■■■■ 4.44
RAP1B-215	ENST00000535492	ARAP1	Q96P48	1450 aa		42.79	■■■■■ 4.44
RAP1B-215	ENST00000535492	CLASP1	Q7Z460	1538 aa		42.75	■■■■■ 4.43
RAP1B-215	ENST00000535492	SYNJ1	O43426	1573 aa		42.74	■■■■■ 4.43
RAP1B-215	ENST00000535492	CHMP7	Q8WUX9	453 aa	Predicted RBP	42.74	■■■■■ 4.43
RAP1B-215	ENST00000535492	GAPVD1	Q14C86	1478 aa		42.72	■■■■■ 4.43
RAP1B-215	ENST00000535492	SYNJ2	O15056	1496 aa		42.7	■■■■■ 4.43
RAP1B-215	ENST00000535492	ABCA5	Q8WWZ7	1642 aa		42.69	■■■■■ 4.42
RAP1B-215	ENST00000535492	ABCA10	Q8WWZ4	1543 aa		42.69	■■■■■ 4.42
RAP1B-215	ENST00000535492	BIVM-ERCC5	R4GMW8	1640 aa		42.57	■■■■■ 4.41
RAP1B-215	ENST00000535492	TOP2B	Q02880	1626 aa		42.53	■■■■■ 4.4
RAP1B-215	ENST00000535492	WRN	Q14191	1432 aa	Predicted RBP eCLIP	42.51	■■■■■ 4.4
RAP1B-215	ENST00000535492	ADAMTS12	P58397	1594 aa		42.37	■■■■■ 4.37
RAP1B-215	ENST00000535492	TRH	P20396	242 aa	Predicted RBP	42.33	■■■■■ 4.37
RAP1B-215	ENST00000535492	GRIN2A	Q12879	1464 aa		42.31	■■■■■ 4.36
RAP1B-215	ENST00000535492	CEP170	Q5SW79	1584 aa		42.21	■■■■■ 4.35
RAP1B-215	ENST00000535492	ERICH3	Q5RHP9	1530 aa		42.17	■■■■■ 4.34
RAP1B-215	ENST00000535492	FHAD1	B1AJZ9	1412 aa		42.15	■■■■■ 4.34
RAP1B-215	ENST00000535492	NUP160	Q12769	1436 aa		42.14	■■■■■ 4.34
RAP1B-215	ENST00000535492	ERCC6L2	Q5T890	1561 aa		42.11	■■■■■ 4.33
RAP1B-215	ENST00000535492	SHROOM2	Q13796	1616 aa		42.03	■■■■■ 4.32
RAP1B-215	ENST00000535492	RUSC2	Q8N2Y8	1516 aa		41.78	■■■■■ 4.28
RAP1B-215	ENST00000535492	PRG4	Q92954	1404 aa	Predicted RBP	41.73	■■■■■ 4.27
RAP1B-215	ENST00000535492	JPH4	Q96JJ6	628 aa		41.66	■■■■■ 4.26
RAP1B-215	ENST00000535492	CUL7	Q14999	1698 aa		41.64	■■■■■ 4.26

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms