RNA–Protein interactions for RNA: ENST00000535120.1

MRE11-205, Transcript of MRE11 homolog, double strand break repair nuclease, humanhuman

TSL 2

Gene MRE11, Length 234 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11-205ENST00000535120 NISCHQ9Y2I1 1504 aa18.15■□□□□ 0.5
MRE11-205ENST00000535120 ABCC9O60706 1549 aa16.66■□□□□ 0.26
MRE11-205ENST00000535120 CCDC180Q9P1Z9 1646 aa16.25■□□□□ 0.19
MRE11-205ENST00000535120 DNAJC5BQ9UF47 199 aa15.8■□□□□ 0.12
MRE11-205ENST00000535120 DCAF8L2P0C7V8 631 aa15.69■□□□□ 0.1
MRE11-205ENST00000535120 RB1CC1Q8TDY2 1594 aa15.65■□□□□ 0.1
MRE11-205ENST00000535120 PABPN1Q86U42 306 aaKnown RBP eCLIP15.56■□□□□ 0.08
MRE11-205ENST00000535120 NACADO15069 1562 aa15.47■□□□□ 0.07
MRE11-205ENST00000535120 UNC13AQ9UPW8 1703 aa15.22■□□□□ 0.03
MRE11-205ENST00000535120 BICRAQ9NZM4 1560 aa15.18■□□□□ 0.02
MRE11-205ENST00000535120 MYO15BQ96JP2 1530 aa15.11■□□□□ 0.01
MRE11-205ENST00000535120 CECR2Q9BXF3 1484 aa14.99□□□□□ -0.01
MRE11-205ENST00000535120 ZCCHC6Q5VYS8 1495 aaKnown RBP14.97□□□□□ -0.01
MRE11-205ENST00000535120 SCRIBQ14160 1630 aa14.97□□□□□ -0.01
MRE11-205ENST00000535120 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
MRE11-205ENST00000535120 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
MRE11-205ENST00000535120 SHROOM4Q9ULL8 1493 aa14.87□□□□□ -0.03
MRE11-205ENST00000535120 EIF4G1Q04637 1599 aaKnown RBP14.85□□□□□ -0.03
MRE11-205ENST00000535120 DNAJC5Q9H3Z4 198 aa14.6□□□□□ -0.07
MRE11-205ENST00000535120 ERCC6Q03468 1493 aa14.41□□□□□ -0.1
MRE11-205ENST00000535120 CUX2O14529 1486 aa14.31□□□□□ -0.12
MRE11-205ENST00000535120 NCAPD3P42695 1498 aa14.31□□□□□ -0.12
MRE11-205ENST00000535120 ATAD2BQ9ULI0 1458 aa14.27□□□□□ -0.12
MRE11-205ENST00000535120 NESP48681 1621 aa14.24□□□□□ -0.13
MRE11-205ENST00000535120 SMARCA2P51531 1590 aa14.19□□□□□ -0.14
MRE11-205ENST00000535120 SMARCA4P51532 1647 aa14.18□□□□□ -0.14
MRE11-205ENST00000535120 BAZ1BQ9UIG0 1483 aaKnown RBP14.16□□□□□ -0.14
MRE11-205ENST00000535120 HMGXB3Q12766 1538 aa14.15□□□□□ -0.14
MRE11-205ENST00000535120 BAZ1AQ9NRL2 1556 aaPredicted RBP14.09□□□□□ -0.15
MRE11-205ENST00000535120 TRIM41Q8WV44 630 aa14.05□□□□□ -0.16
MRE11-205ENST00000535120 MROH2BQ7Z745 1585 aa14.02□□□□□ -0.16
MRE11-205ENST00000535120 THOC2Q8NI27 1593 aaKnown RBP14.01□□□□□ -0.17
MRE11-205ENST00000535120 PDS5BQ9NTI5 1447 aa14□□□□□ -0.17
MRE11-205ENST00000535120 LAMC3Q9Y6N6 1575 aa14□□□□□ -0.17
MRE11-205ENST00000535120 PEG3Q9GZU2 1588 aa13.96□□□□□ -0.18
MRE11-205ENST00000535120 KIF21AQ7Z4S6 1674 aa13.95□□□□□ -0.18
MRE11-205ENST00000535120 CADPSQ9ULU8 1353 aa13.93□□□□□ -0.18
MRE11-205ENST00000535120 MRC2Q9UBG0 1479 aa13.87□□□□□ -0.19
MRE11-205ENST00000535120 WIZO95785 1651 aa13.83□□□□□ -0.2
MRE11-205ENST00000535120 CEP164Q9UPV0 1460 aa13.8□□□□□ -0.2
MRE11-205ENST00000535120 WDR62O43379 1518 aa13.79□□□□□ -0.2
MRE11-205ENST00000535120 FANCD2Q9BXW9 1451 aa13.78□□□□□ -0.2
MRE11-205ENST00000535120 OSCARQ8IYS5 282 aa13.75□□□□□ -0.21
MRE11-205ENST00000535120 CFTRP13569 1480 aa13.68□□□□□ -0.22
MRE11-205ENST00000535120 RSF1Q96T23 1441 aaPredicted RBP13.67□□□□□ -0.22
MRE11-205ENST00000535120 URB2Q14146 1524 aaKnown RBP13.65□□□□□ -0.22
MRE11-205ENST00000535120 TOP2AP11388 1531 aaKnown RBP13.61□□□□□ -0.23
MRE11-205ENST00000535120 ZNF608Q9ULD9 1512 aaPredicted RBP13.55□□□□□ -0.24
MRE11-205ENST00000535120 FBLN2P98095 1184 aa13.52□□□□□ -0.25
MRE11-205ENST00000535120 CCDC88BA6NC98 1476 aa13.52□□□□□ -0.25
MRE11-205ENST00000535120 CYB5RLQ6IPT4 315 aa13.51□□□□□ -0.25
MRE11-205ENST00000535120 RIMBP3CA6NJZ7 1639 aa13.5□□□□□ -0.25
MRE11-205ENST00000535120 RIMBP3BA6NNM3 1639 aa13.5□□□□□ -0.25
MRE11-205ENST00000535120 RIMBP3Q9UFD9 1639 aa13.5□□□□□ -0.25
MRE11-205ENST00000535120 IFT140Q96RY7 1462 aa13.5□□□□□ -0.25
MRE11-205ENST00000535120 TRHP20396 242 aaPredicted RBP13.48□□□□□ -0.25
MRE11-205ENST00000535120 TOPBP1Q92547 1522 aa13.47□□□□□ -0.25
MRE11-205ENST00000535120 ARHGEF11O15085 1522 aa13.46□□□□□ -0.25
MRE11-205ENST00000535120 AQRO60306 1485 aaKnown RBP eCLIP13.43□□□□□ -0.26
MRE11-205ENST00000535120 EIF4G3O43432 1585 aaKnown RBP13.41□□□□□ -0.26
MRE11-205ENST00000535120 PRDM2Q13029 1718 aa13.4□□□□□ -0.26
MRE11-205ENST00000535120 ABCC8Q09428 1581 aa13.38□□□□□ -0.27
MRE11-205ENST00000535120 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
MRE11-205ENST00000535120 TDRD9Q8NDG6 1382 aaKnown RBP13.35□□□□□ -0.27
MRE11-205ENST00000535120 RAD54L2Q9Y4B4 1467 aa13.34□□□□□ -0.27
MRE11-205ENST00000535120 ARAP1Q96P48 1450 aa13.33□□□□□ -0.28
MRE11-205ENST00000535120 POLA1P09884 1462 aaPredicted RBP13.32□□□□□ -0.28
MRE11-205ENST00000535120 CHD1O14646 1710 aa13.32□□□□□ -0.28
MRE11-205ENST00000535120 SOGA1O94964 1423 aa13.31□□□□□ -0.28
MRE11-205ENST00000535120 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
MRE11-205ENST00000535120 TARBP1Q13395 1621 aaKnown RBP13.3□□□□□ -0.28
MRE11-205ENST00000535120 SNAPC4Q5SXM2 1469 aa13.27□□□□□ -0.29
MRE11-205ENST00000535120 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
MRE11-205ENST00000535120 AEBP2Q6ZN18 517 aaPredicted RBP13.21□□□□□ -0.29
MRE11-205ENST00000535120 CUX1P39880 1505 aa13.18□□□□□ -0.3
MRE11-205ENST00000535120 GRIN2BQ13224 1484 aa13.17□□□□□ -0.3
MRE11-205ENST00000535120 SYNJ1O43426 1573 aa13.17□□□□□ -0.3
MRE11-205ENST00000535120 MAGI1Q96QZ7 1491 aaPredicted RBP13.16□□□□□ -0.3
MRE11-205ENST00000535120 CLASP1Q7Z460 1538 aa13.15□□□□□ -0.3
MRE11-205ENST00000535120 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
MRE11-205ENST00000535120 SYNJ2O15056 1496 aa13.14□□□□□ -0.31
MRE11-205ENST00000535120 GAPVD1Q14C86 1478 aa13.12□□□□□ -0.31
MRE11-205ENST00000535120 WDR97A6NE52 1622 aa13.08□□□□□ -0.32
MRE11-205ENST00000535120 PBRM1Q86U86 1689 aa13.04□□□□□ -0.32
MRE11-205ENST00000535120 ABCA10Q8WWZ4 1543 aa13.03□□□□□ -0.32
MRE11-205ENST00000535120 ERCC6L2Q5T890 1561 aa13.02□□□□□ -0.33
MRE11-205ENST00000535120 WRNQ14191 1432 aaPredicted RBP eCLIP13□□□□□ -0.33
MRE11-205ENST00000535120 GRIN2AQ12879 1464 aa12.99□□□□□ -0.33
MRE11-205ENST00000535120 ABCA5Q8WWZ7 1642 aa12.99□□□□□ -0.33
MRE11-205ENST00000535120 CEP170Q5SW79 1584 aa12.94□□□□□ -0.34
MRE11-205ENST00000535120 FHAD1B1AJZ9 1412 aa12.93□□□□□ -0.34
MRE11-205ENST00000535120 NUP160Q12769 1436 aa12.93□□□□□ -0.34
MRE11-205ENST00000535120 ADAMTS12P58397 1594 aa12.93□□□□□ -0.34
MRE11-205ENST00000535120 PRG4Q92954 1404 aaPredicted RBP12.91□□□□□ -0.34
MRE11-205ENST00000535120 JPH4Q96JJ6 628 aa12.91□□□□□ -0.34
MRE11-205ENST00000535120 NPM1P06748 294 aaKnown RBP eCLIP12.89□□□□□ -0.35
MRE11-205ENST00000535120 FAM69CQ0P6D2 419 aa12.88□□□□□ -0.35
MRE11-205ENST00000535120 TTBK1Q5TCY1 1321 aaPredicted RBP12.88□□□□□ -0.35
MRE11-205ENST00000535120 TOP2BQ02880 1626 aa12.86□□□□□ -0.35
MRE11-205ENST00000535120 ERICH3Q5RHP9 1530 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms