RNA–Protein interactions for RNA: ENST00000534754.5

SORL1-213, Transcript of sortilin related receptor 1, humanhuman

TSL 3

Gene SORL1, Length 2,222 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SORL1-213ENST00000534754 NISCHQ9Y2I1 1504 aa19.63■□□□□ 0.73
SORL1-213ENST00000534754 CCDC180Q9P1Z9 1646 aa17.4■□□□□ 0.38
SORL1-213ENST00000534754 ABCC9O60706 1549 aa16.73■□□□□ 0.27
SORL1-213ENST00000534754 ZCCHC6Q5VYS8 1495 aaKnown RBP16.43■□□□□ 0.22
SORL1-213ENST00000534754 DCAF1Q9Y4B6 1507 aa16.23■□□□□ 0.19
SORL1-213ENST00000534754 NACADO15069 1562 aa16.23■□□□□ 0.19
SORL1-213ENST00000534754 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.18
SORL1-213ENST00000534754 RB1CC1Q8TDY2 1594 aa16.19■□□□□ 0.18
SORL1-213ENST00000534754 MYO15BQ96JP2 1530 aa16.19■□□□□ 0.18
SORL1-213ENST00000534754 UNC13AQ9UPW8 1703 aa16.04■□□□□ 0.16
SORL1-213ENST00000534754 SCRIBQ14160 1630 aa15.91■□□□□ 0.14
SORL1-213ENST00000534754 BICRAQ9NZM4 1560 aa15.78■□□□□ 0.12
SORL1-213ENST00000534754 SHROOM4Q9ULL8 1493 aa15.66■□□□□ 0.1
SORL1-213ENST00000534754 PABPN1Q86U42 306 aaKnown RBP eCLIP15.64■□□□□ 0.09
SORL1-213ENST00000534754 EIF4G1Q04637 1599 aaKnown RBP15.3■□□□□ 0.04
SORL1-213ENST00000534754 CECR2Q9BXF3 1484 aa15.3■□□□□ 0.04
SORL1-213ENST00000534754 SMARCA4P51532 1647 aa15.23■□□□□ 0.03
SORL1-213ENST00000534754 CC2D2AQ9P2K1 1620 aa15.19■□□□□ 0.02
SORL1-213ENST00000534754 BAZ1AQ9NRL2 1556 aaPredicted RBP15.19■□□□□ 0.02
SORL1-213ENST00000534754 MROH2BQ7Z745 1585 aa15.17■□□□□ 0.02
SORL1-213ENST00000534754 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
SORL1-213ENST00000534754 WIZO95785 1651 aa15.07■□□□□ 0
SORL1-213ENST00000534754 PEG3Q9GZU2 1588 aa15.05■□□□□ 0
SORL1-213ENST00000534754 RSF1Q96T23 1441 aaPredicted RBP15.04■□□□□ -0
SORL1-213ENST00000534754 ATAD2BQ9ULI0 1458 aa15.02□□□□□ -0.01
SORL1-213ENST00000534754 SMARCA2P51531 1590 aa15.01□□□□□ -0.01
SORL1-213ENST00000534754 NCAPD3P42695 1498 aa14.94□□□□□ -0.02
SORL1-213ENST00000534754 HMGXB3Q12766 1538 aa14.94□□□□□ -0.02
SORL1-213ENST00000534754 BAZ1BQ9UIG0 1483 aaKnown RBP14.9□□□□□ -0.02
SORL1-213ENST00000534754 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
SORL1-213ENST00000534754 SUPT5HO00267 1087 aaKnown RBP14.84□□□□□ -0.03
SORL1-213ENST00000534754 HRCP23327 699 aa14.84□□□□□ -0.03
SORL1-213ENST00000534754 CCDC88BA6NC98 1476 aa14.66□□□□□ -0.06
SORL1-213ENST00000534754 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
SORL1-213ENST00000534754 NESP48681 1621 aa14.59□□□□□ -0.07
SORL1-213ENST00000534754 PRDM2Q13029 1718 aa14.58□□□□□ -0.07
SORL1-213ENST00000534754 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
SORL1-213ENST00000534754 PCGF6Q9BYE7 350 aa14.55□□□□□ -0.08
SORL1-213ENST00000534754 CFTRP13569 1480 aa14.51□□□□□ -0.09
SORL1-213ENST00000534754 KIF21AQ7Z4S6 1674 aa14.51□□□□□ -0.09
SORL1-213ENST00000534754 CADPSQ9ULU8 1353 aa14.51□□□□□ -0.09
SORL1-213ENST00000534754 PPARGC1BQ86YN6 1023 aaKnown RBP14.42□□□□□ -0.1
SORL1-213ENST00000534754 FANCD2Q9BXW9 1451 aa14.38□□□□□ -0.11
SORL1-213ENST00000534754 PDS5BQ9NTI5 1447 aa14.37□□□□□ -0.11
SORL1-213ENST00000534754 ERCC6Q03468 1493 aa14.35□□□□□ -0.11
SORL1-213ENST00000534754 THOC2Q8NI27 1593 aaKnown RBP14.35□□□□□ -0.11
SORL1-213ENST00000534754 CEP164Q9UPV0 1460 aa14.33□□□□□ -0.12
SORL1-213ENST00000534754 ABCC8Q09428 1581 aa14.27□□□□□ -0.13
SORL1-213ENST00000534754 URB2Q14146 1524 aaKnown RBP14.26□□□□□ -0.13
SORL1-213ENST00000534754 MRC2Q9UBG0 1479 aa14.26□□□□□ -0.13
SORL1-213ENST00000534754 WDR62O43379 1518 aa14.25□□□□□ -0.13
SORL1-213ENST00000534754 CUX1P39880 1505 aa14.21□□□□□ -0.13
SORL1-213ENST00000534754 DNMBPQ6XZF7 1577 aa14.21□□□□□ -0.13
SORL1-213ENST00000534754 TRIM26Q12899 539 aaPredicted RBP14.21□□□□□ -0.13
SORL1-213ENST00000534754 TOPBP1Q92547 1522 aa14.21□□□□□ -0.14
SORL1-213ENST00000534754 SYNJ1O43426 1573 aa14.2□□□□□ -0.14
SORL1-213ENST00000534754 BIVM-ERCC5R4GMW8 1640 aa14.19□□□□□ -0.14
SORL1-213ENST00000534754 LOC105371045A0A1W2PR82 267 aa14.18□□□□□ -0.14
SORL1-213ENST00000534754 PELP1Q8IZL8 1130 aaKnown RBP14.16□□□□□ -0.14
SORL1-213ENST00000534754 TOP2BQ02880 1626 aa14.15□□□□□ -0.14
SORL1-213ENST00000534754 WRNQ14191 1432 aaPredicted RBP eCLIP14.15□□□□□ -0.14
SORL1-213ENST00000534754 CUX2O14529 1486 aa14.11□□□□□ -0.15
SORL1-213ENST00000534754 ZEB1P37275 1124 aaPredicted RBP14.1□□□□□ -0.15
SORL1-213ENST00000534754 FGD5Q6ZNL6 1462 aa14.1□□□□□ -0.15
SORL1-213ENST00000534754 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
SORL1-213ENST00000534754 WDR97A6NE52 1622 aa14.08□□□□□ -0.16
SORL1-213ENST00000534754 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.16
SORL1-213ENST00000534754 RAD54L2Q9Y4B4 1467 aa14.04□□□□□ -0.16
SORL1-213ENST00000534754 IFT140Q96RY7 1462 aa14□□□□□ -0.17
SORL1-213ENST00000534754 ZNF608Q9ULD9 1512 aaPredicted RBP13.98□□□□□ -0.17
SORL1-213ENST00000534754 SOGA1O94964 1423 aa13.98□□□□□ -0.17
SORL1-213ENST00000534754 EIF4G3O43432 1585 aaKnown RBP13.98□□□□□ -0.17
SORL1-213ENST00000534754 ABCA10Q8WWZ4 1543 aa13.96□□□□□ -0.18
SORL1-213ENST00000534754 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
SORL1-213ENST00000534754 PBRM1Q86U86 1689 aa13.94□□□□□ -0.18
SORL1-213ENST00000534754 TRIM41Q8WV44 630 aa13.92□□□□□ -0.18
SORL1-213ENST00000534754 TDRD9Q8NDG6 1382 aaKnown RBP13.9□□□□□ -0.18
SORL1-213ENST00000534754 AQRO60306 1485 aaKnown RBP eCLIP13.9□□□□□ -0.187e-21■■■■■ 30
SORL1-213ENST00000534754 SCAF1Q9H7N4 1312 aaKnown RBP13.89□□□□□ -0.19
SORL1-213ENST00000534754 RUSC2Q8N2Y8 1516 aa13.87□□□□□ -0.19
SORL1-213ENST00000534754 GAPVD1Q14C86 1478 aa13.85□□□□□ -0.19
SORL1-213ENST00000534754 CHD1O14646 1710 aa13.81□□□□□ -0.2
SORL1-213ENST00000534754 KIF27Q86VH2 1401 aa13.81□□□□□ -0.2
SORL1-213ENST00000534754 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
SORL1-213ENST00000534754 ERICH3Q5RHP9 1530 aa13.79□□□□□ -0.2
SORL1-213ENST00000534754 SNAPC4Q5SXM2 1469 aa13.79□□□□□ -0.2
SORL1-213ENST00000534754 ADAMTS12P58397 1594 aa13.79□□□□□ -0.2
SORL1-213ENST00000534754 CUL7Q14999 1698 aa13.76□□□□□ -0.21
SORL1-213ENST00000534754 MAGI1Q96QZ7 1491 aaPredicted RBP13.75□□□□□ -0.21
SORL1-213ENST00000534754 IGF1RP08069 1367 aa13.73□□□□□ -0.21
SORL1-213ENST00000534754 SYNJ2O15056 1496 aa13.7□□□□□ -0.22
SORL1-213ENST00000534754 FAM9AQ8IZU1 332 aaPredicted RBP13.7□□□□□ -0.22
SORL1-213ENST00000534754 EEA1Q15075 1411 aa13.68□□□□□ -0.22
SORL1-213ENST00000534754 FHAD1B1AJZ9 1412 aa13.68□□□□□ -0.22
SORL1-213ENST00000534754 GRIN2AQ12879 1464 aa13.66□□□□□ -0.22
SORL1-213ENST00000534754 PRXQ9BXM0 1461 aa13.65□□□□□ -0.22
SORL1-213ENST00000534754 ACIN1Q9UKV3 1341 aaKnown RBP13.65□□□□□ -0.22
SORL1-213ENST00000534754 CARMIL1Q5VZK9 1371 aa13.64□□□□□ -0.23
SORL1-213ENST00000534754 CEP170Q5SW79 1584 aa13.64□□□□□ -0.23
SORL1-213ENST00000534754 KIF21BO75037 1637 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms