RNA–Protein interactions for RNA: ENST00000534753.5

CCDC90B-219, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 5

Gene CCDC90B, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-219ENST00000534753 AEBP2Q6ZN18 517 aaPredicted RBP24.51■■□□□ 1.51
CCDC90B-219ENST00000534753 CHIC1Q5VXU3 224 aa24.33■■□□□ 1.49
CCDC90B-219ENST00000534753 NISCHQ9Y2I1 1504 aa21.68■■□□□ 1.06
CCDC90B-219ENST00000534753 PHF23Q9BUL5 403 aaPredicted RBP21.55■■□□□ 1.04
CCDC90B-219ENST00000534753 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
CCDC90B-219ENST00000534753 PLPPR3Q6T4P5 718 aa19.93■□□□□ 0.78
CCDC90B-219ENST00000534753 POTEDQ86YR6 584 aa19.39■□□□□ 0.69
CCDC90B-219ENST00000534753 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
CCDC90B-219ENST00000534753 ABCC9O60706 1549 aa19.17■□□□□ 0.66
CCDC90B-219ENST00000534753 FOXD1Q16676 465 aa19.12■□□□□ 0.65
CCDC90B-219ENST00000534753 ADRA2BP18089 450 aa18.88■□□□□ 0.61
CCDC90B-219ENST00000534753 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
CCDC90B-219ENST00000534753 DCAF8L2P0C7V8 631 aa18.44■□□□□ 0.54
CCDC90B-219ENST00000534753 MSH5O43196 834 aa18.3■□□□□ 0.52
CCDC90B-219ENST00000534753 RB1CC1Q8TDY2 1594 aa18.29■□□□□ 0.52
CCDC90B-219ENST00000534753 NACADO15069 1562 aa18.19■□□□□ 0.5
CCDC90B-219ENST00000534753 PIAS4Q8N2W9 510 aaPredicted RBP18.13■□□□□ 0.49
CCDC90B-219ENST00000534753 ZCCHC6Q5VYS8 1495 aaKnown RBP18.01■□□□□ 0.47
CCDC90B-219ENST00000534753 KCNA4P22459 653 aa17.97■□□□□ 0.47
CCDC90B-219ENST00000534753 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
CCDC90B-219ENST00000534753 MYO15BQ96JP2 1530 aa17.94■□□□□ 0.46
CCDC90B-219ENST00000534753 UNC13AQ9UPW8 1703 aa17.86■□□□□ 0.45
CCDC90B-219ENST00000534753 DCAF1Q9Y4B6 1507 aa17.83■□□□□ 0.45
CCDC90B-219ENST00000534753 DNAJC5BQ9UF47 199 aa17.73■□□□□ 0.43
CCDC90B-219ENST00000534753 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
CCDC90B-219ENST00000534753 BICRAQ9NZM4 1560 aa17.71■□□□□ 0.43
CCDC90B-219ENST00000534753 PPP4R3CPQ6ZMV5 832 aa17.71■□□□□ 0.43
CCDC90B-219ENST00000534753 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
CCDC90B-219ENST00000534753 EHMT2Q96KQ7 1210 aa17.38■□□□□ 0.37
CCDC90B-219ENST00000534753 EIF4G1Q04637 1599 aaKnown RBP17.28■□□□□ 0.36
CCDC90B-219ENST00000534753 CC2D2AQ9P2K1 1620 aa17.28■□□□□ 0.36
CCDC90B-219ENST00000534753 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
CCDC90B-219ENST00000534753 CECR2Q9BXF3 1484 aa17.2■□□□□ 0.34
CCDC90B-219ENST00000534753 NPM3O75607 178 aaKnown RBP17.17■□□□□ 0.34
CCDC90B-219ENST00000534753 SLC4A1APQ9BWU0 796 aaKnown RBP17.14■□□□□ 0.33
CCDC90B-219ENST00000534753 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
CCDC90B-219ENST00000534753 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.32
CCDC90B-219ENST00000534753 MAPK8IP2Q13387 824 aaPredicted RBP17.01■□□□□ 0.31
CCDC90B-219ENST00000534753 CSRNP3Q8WYN3 585 aa16.87■□□□□ 0.29
CCDC90B-219ENST00000534753 SMARCA4P51532 1647 aa16.86■□□□□ 0.29
CCDC90B-219ENST00000534753 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
CCDC90B-219ENST00000534753 ATAD2BQ9ULI0 1458 aa16.81■□□□□ 0.28
CCDC90B-219ENST00000534753 NCAPD3P42695 1498 aa16.79■□□□□ 0.28
CCDC90B-219ENST00000534753 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
CCDC90B-219ENST00000534753 MROH2BQ7Z745 1585 aa16.74■□□□□ 0.27
CCDC90B-219ENST00000534753 BAZ1BQ9UIG0 1483 aaKnown RBP16.7■□□□□ 0.26
CCDC90B-219ENST00000534753 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
CCDC90B-219ENST00000534753 PEG3Q9GZU2 1588 aa16.62■□□□□ 0.25
CCDC90B-219ENST00000534753 ZBTB22O15209 634 aa16.6■□□□□ 0.25
CCDC90B-219ENST00000534753 WIZO95785 1651 aa16.58■□□□□ 0.24
CCDC90B-219ENST00000534753 RNF216Q9NWF9 866 aaPredicted RBP16.55■□□□□ 0.24
CCDC90B-219ENST00000534753 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
CCDC90B-219ENST00000534753 NESP48681 1621 aa16.53■□□□□ 0.24
CCDC90B-219ENST00000534753 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
CCDC90B-219ENST00000534753 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
CCDC90B-219ENST00000534753 LAMC3Q9Y6N6 1575 aa16.38■□□□□ 0.21
CCDC90B-219ENST00000534753 HOXD11P31277 338 aaPredicted RBP16.36■□□□□ 0.21
CCDC90B-219ENST00000534753 TOP2AP11388 1531 aaKnown RBP16.35■□□□□ 0.21
CCDC90B-219ENST00000534753 CADPSQ9ULU8 1353 aa16.34■□□□□ 0.21
CCDC90B-219ENST00000534753 PDS5BQ9NTI5 1447 aa16.32■□□□□ 0.2
CCDC90B-219ENST00000534753 KIF21AQ7Z4S6 1674 aa16.3■□□□□ 0.2
CCDC90B-219ENST00000534753 CUX2O14529 1486 aa16.3■□□□□ 0.2
CCDC90B-219ENST00000534753 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
CCDC90B-219ENST00000534753 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
CCDC90B-219ENST00000534753 CACNB1Q02641 598 aaPredicted RBP16.22■□□□□ 0.19
CCDC90B-219ENST00000534753 CCDC88BA6NC98 1476 aa16.19■□□□□ 0.18
CCDC90B-219ENST00000534753 CFTRP13569 1480 aa16.17■□□□□ 0.18
CCDC90B-219ENST00000534753 FANCD2Q9BXW9 1451 aa16.17■□□□□ 0.18
CCDC90B-219ENST00000534753 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
CCDC90B-219ENST00000534753 MRC2Q9UBG0 1479 aa16.16■□□□□ 0.18
CCDC90B-219ENST00000534753 SUPT5HO00267 1087 aaKnown RBP16.15■□□□□ 0.18
CCDC90B-219ENST00000534753 SLC4A2P04920 1241 aa16.11■□□□□ 0.17
CCDC90B-219ENST00000534753 WDR62O43379 1518 aa16.07■□□□□ 0.16
CCDC90B-219ENST00000534753 DNAJC5Q9H3Z4 198 aa16.04■□□□□ 0.16
CCDC90B-219ENST00000534753 PRDM2Q13029 1718 aa16.02■□□□□ 0.16
CCDC90B-219ENST00000534753 URB2Q14146 1524 aaKnown RBP16.01■□□□□ 0.15
CCDC90B-219ENST00000534753 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
CCDC90B-219ENST00000534753 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
CCDC90B-219ENST00000534753 ABCC8Q09428 1581 aa15.83■□□□□ 0.13
CCDC90B-219ENST00000534753 DNMBPQ6XZF7 1577 aa15.83■□□□□ 0.13
CCDC90B-219ENST00000534753 IFT140Q96RY7 1462 aa15.8■□□□□ 0.12
CCDC90B-219ENST00000534753 ZNF608Q9ULD9 1512 aaPredicted RBP15.79■□□□□ 0.12
CCDC90B-219ENST00000534753 MYCNP04198 464 aaPredicted RBP15.77■□□□□ 0.12
CCDC90B-219ENST00000534753 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
CCDC90B-219ENST00000534753 RAD54L2Q9Y4B4 1467 aa15.72■□□□□ 0.11
CCDC90B-219ENST00000534753 SOGA1O94964 1423 aa15.71■□□□□ 0.11
CCDC90B-219ENST00000534753 OSCARQ8IYS5 282 aa15.71■□□□□ 0.11
CCDC90B-219ENST00000534753 CUX1P39880 1505 aa15.71■□□□□ 0.11
CCDC90B-219ENST00000534753 AQRO60306 1485 aaKnown RBP eCLIP15.71■□□□□ 0.1
CCDC90B-219ENST00000534753 FGD5Q6ZNL6 1462 aa15.71■□□□□ 0.1
CCDC90B-219ENST00000534753 EIF4G3O43432 1585 aaKnown RBP15.7■□□□□ 0.1
CCDC90B-219ENST00000534753 TARBP1Q13395 1621 aaKnown RBP15.68■□□□□ 0.1
CCDC90B-219ENST00000534753 TDRD9Q8NDG6 1382 aaKnown RBP15.67■□□□□ 0.1
CCDC90B-219ENST00000534753 FBLN2P98095 1184 aa15.67■□□□□ 0.1
CCDC90B-219ENST00000534753 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC90B-219ENST00000534753 TRIM41Q8WV44 630 aa15.61■□□□□ 0.09
CCDC90B-219ENST00000534753 WRNQ14191 1432 aaPredicted RBP eCLIP15.58■□□□□ 0.08
CCDC90B-219ENST00000534753 ATXN8OSP0DMR3 200 aa15.56■□□□□ 0.08
CCDC90B-219ENST00000534753 CHD1O14646 1710 aa15.54■□□□□ 0.08
CCDC90B-219ENST00000534753 SYNJ1O43426 1573 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms