RNA–Protein interactions for RNA: ENST00000534548.6

NCAPD3-214, Transcript of non-SMC condensin II complex subunit D3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NCAPD3, Length 5,061 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCAPD3-214ENST00000534548 NISCHQ9Y2I1 1504 aa18.77■□□□□ 0.6
NCAPD3-214ENST00000534548 SHROOM4Q9ULL8 1493 aa16.78■□□□□ 0.28
NCAPD3-214ENST00000534548 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
NCAPD3-214ENST00000534548 SUPT5HO00267 1087 aaKnown RBP16.63■□□□□ 0.25
NCAPD3-214ENST00000534548 DCAF8L2P0C7V8 631 aa16.45■□□□□ 0.22
NCAPD3-214ENST00000534548 PCGF6Q9BYE7 350 aa16.4■□□□□ 0.22
NCAPD3-214ENST00000534548 MYT1Q01538 1121 aa16.36■□□□□ 0.21
NCAPD3-214ENST00000534548 HRCP23327 699 aa16.14■□□□□ 0.17
NCAPD3-214ENST00000534548 CENPBP07199 599 aaPredicted RBP16.03■□□□□ 0.16
NCAPD3-214ENST00000534548 ZEB1P37275 1124 aaPredicted RBP16.01■□□□□ 0.15
NCAPD3-214ENST00000534548 EHMT2Q96KQ7 1210 aa15.91■□□□□ 0.14
NCAPD3-214ENST00000534548 CHIC1Q5VXU3 224 aa15.87■□□□□ 0.13
NCAPD3-214ENST00000534548 ZCCHC6Q5VYS8 1495 aaKnown RBP15.83■□□□□ 0.12
NCAPD3-214ENST00000534548 PPARGC1BQ86YN6 1023 aaKnown RBP15.82■□□□□ 0.12
NCAPD3-214ENST00000534548 MYO15BQ96JP2 1530 aa15.7■□□□□ 0.1
NCAPD3-214ENST00000534548 CCER1Q8TC90 406 aaPredicted RBP15.65■□□□□ 0.1
NCAPD3-214ENST00000534548 LOC105371045A0A1W2PR82 267 aa15.63■□□□□ 0.09
NCAPD3-214ENST00000534548 TRIM26Q12899 539 aaPredicted RBP15.63■□□□□ 0.09
NCAPD3-214ENST00000534548 YTHDC1Q96MU7 727 aaKnown RBP15.61■□□□□ 0.09
NCAPD3-214ENST00000534548 FAM9AQ8IZU1 332 aaPredicted RBP15.61■□□□□ 0.09
NCAPD3-214ENST00000534548 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
NCAPD3-214ENST00000534548 ERICH6Q7L0X2 663 aa15.56■□□□□ 0.08
NCAPD3-214ENST00000534548 TTBK1Q5TCY1 1321 aaPredicted RBP15.51■□□□□ 0.07
NCAPD3-214ENST00000534548 APLP2Q06481 763 aa15.34■□□□□ 0.05
NCAPD3-214ENST00000534548 TRIM41Q8WV44 630 aa15.32■□□□□ 0.04
NCAPD3-214ENST00000534548 GTF3C3Q9Y5Q9 886 aa15.32■□□□□ 0.04
NCAPD3-214ENST00000534548 NEFLP07196 543 aa15.25■□□□□ 0.03
NCAPD3-214ENST00000534548 DIEXFQ68CQ4 756 aaKnown RBP15.23■□□□□ 0.03
NCAPD3-214ENST00000534548 ACIN1Q9UKV3 1341 aaKnown RBP15.19■□□□□ 0.02
NCAPD3-214ENST00000534548 DCAF1Q9Y4B6 1507 aa15.14■□□□□ 0.01
NCAPD3-214ENST00000534548 SCAF1Q9H7N4 1312 aaKnown RBP15.12■□□□□ 0.01
NCAPD3-214ENST00000534548 SCRIBQ14160 1630 aa15.1■□□□□ 0.01
NCAPD3-214ENST00000534548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.08■□□□□ 0
NCAPD3-214ENST00000534548 RSF1Q96T23 1441 aaPredicted RBP15.03■□□□□ -0
NCAPD3-214ENST00000534548 ABCC9O60706 1549 aa14.98□□□□□ -0.01
NCAPD3-214ENST00000534548 UBTFP17480 764 aaKnown RBP14.93□□□□□ -0.02
NCAPD3-214ENST00000534548 NEUROD1Q13562 356 aa14.91□□□□□ -0.02
NCAPD3-214ENST00000534548 RANGAP1P46060 587 aaPredicted RBP14.91□□□□□ -0.02
NCAPD3-214ENST00000534548 RB1CC1Q8TDY2 1594 aa14.87□□□□□ -0.03
NCAPD3-214ENST00000534548 CECR2Q9BXF3 1484 aa14.83□□□□□ -0.04
NCAPD3-214ENST00000534548 BCANQ96GW7 911 aa14.8□□□□□ -0.04
NCAPD3-214ENST00000534548 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
NCAPD3-214ENST00000534548 ZNF316A6NFI3 1004 aaPredicted RBP14.79□□□□□ -0.04
NCAPD3-214ENST00000534548 RTL5Q5HYW3 569 aaPredicted RBP14.73□□□□□ -0.05
NCAPD3-214ENST00000534548 MROH2BQ7Z745 1585 aa14.7□□□□□ -0.06
NCAPD3-214ENST00000534548 DAXXQ9UER7 740 aaPredicted RBP14.61□□□□□ -0.07
NCAPD3-214ENST00000534548 WIZO95785 1651 aa14.6□□□□□ -0.07
NCAPD3-214ENST00000534548 CLSPNQ9HAW4 1339 aa14.6□□□□□ -0.07
NCAPD3-214ENST00000534548 PABPN1Q86U42 306 aaKnown RBP eCLIP14.57□□□□□ -0.08
NCAPD3-214ENST00000534548 CDK11AQ9UQ88 783 aaPredicted RBP14.57□□□□□ -0.08
NCAPD3-214ENST00000534548 NACADO15069 1562 aa14.56□□□□□ -0.08
NCAPD3-214ENST00000534548 ITGAEP38570 1179 aa14.55□□□□□ -0.08
NCAPD3-214ENST00000534548 ATP1B4Q9UN42 357 aaPredicted RBP14.54□□□□□ -0.08
NCAPD3-214ENST00000534548 ANP32EQ9BTT0 268 aa14.53□□□□□ -0.08
NCAPD3-214ENST00000534548 ABCC8Q09428 1581 aa14.47□□□□□ -0.09
NCAPD3-214ENST00000534548 BCL11AQ9H165 835 aa14.47□□□□□ -0.09
NCAPD3-214ENST00000534548 FKBP8Q14318 412 aa14.46□□□□□ -0.1
NCAPD3-214ENST00000534548 CSRNP3Q8WYN3 585 aa14.45□□□□□ -0.1
NCAPD3-214ENST00000534548 CCDC88BA6NC98 1476 aa14.44□□□□□ -0.1
NCAPD3-214ENST00000534548 MIER1Q8N108 512 aa14.42□□□□□ -0.1
NCAPD3-214ENST00000534548 SOGA1O94964 1423 aa14.42□□□□□ -0.1
NCAPD3-214ENST00000534548 BAZ1AQ9NRL2 1556 aaPredicted RBP14.4□□□□□ -0.1
NCAPD3-214ENST00000534548 MYT1LQ9UL68 1186 aa14.4□□□□□ -0.1
NCAPD3-214ENST00000534548 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
NCAPD3-214ENST00000534548 ANP32CO43423 234 aa14.37□□□□□ -0.11
NCAPD3-214ENST00000534548 EIF5BO60841 1220 aaKnown RBP14.35□□□□□ -0.11
NCAPD3-214ENST00000534548 CNGB1Q14028 1251 aaPredicted RBP14.33□□□□□ -0.12
NCAPD3-214ENST00000534548 RUSC2Q8N2Y8 1516 aa14.32□□□□□ -0.12
NCAPD3-214ENST00000534548 POLR3GLQ9BT43 218 aa14.32□□□□□ -0.12
NCAPD3-214ENST00000534548 ANP32AP39687 249 aaKnown RBP14.29□□□□□ -0.12
NCAPD3-214ENST00000534548 TNIKQ9UKE5 1360 aa14.27□□□□□ -0.12
NCAPD3-214ENST00000534548 TOP2AP11388 1531 aaKnown RBP14.26□□□□□ -0.13
NCAPD3-214ENST00000534548 NBR1Q14596 966 aa14.25□□□□□ -0.13
NCAPD3-214ENST00000534548 SMARCA4P51532 1647 aa14.22□□□□□ -0.13
NCAPD3-214ENST00000534548 SMARCA2P51531 1590 aa14.21□□□□□ -0.13
NCAPD3-214ENST00000534548 WRNQ14191 1432 aaPredicted RBP eCLIP14.2□□□□□ -0.14
NCAPD3-214ENST00000534548 SUPT16HQ9Y5B9 1047 aaKnown RBP14.2□□□□□ -0.14
NCAPD3-214ENST00000534548 GOLGA3Q08378 1498 aa14.18□□□□□ -0.14
NCAPD3-214ENST00000534548 NPM2Q86SE8 214 aaKnown RBP14.15□□□□□ -0.14
NCAPD3-214ENST00000534548 EEA1Q15075 1411 aa14.15□□□□□ -0.14
NCAPD3-214ENST00000534548 CLIP1P30622 1438 aa14.15□□□□□ -0.14
NCAPD3-214ENST00000534548 EIF4G1Q04637 1599 aaKnown RBP14.14□□□□□ -0.15
NCAPD3-214ENST00000534548 TRIM52Q96A61 297 aa14.13□□□□□ -0.15
NCAPD3-214ENST00000534548 FAM50AQ14320 339 aaKnown RBP14.12□□□□□ -0.15
NCAPD3-214ENST00000534548 GLIPR1L2Q4G1C9 344 aa14.12□□□□□ -0.15
NCAPD3-214ENST00000534548 DDX10Q13206 875 aaKnown RBP14.11□□□□□ -0.15
NCAPD3-214ENST00000534548 ZBTB47Q9UFB7 747 aaPredicted RBP14.09□□□□□ -0.15
NCAPD3-214ENST00000534548 HNRNPUQ00839 825 aaKnown RBP eCLIP14.09□□□□□ -0.15
NCAPD3-214ENST00000534548 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
NCAPD3-214ENST00000534548 IRX6P78412 446 aaPredicted RBP14.04□□□□□ -0.16
NCAPD3-214ENST00000534548 TSHZ2Q9NRE2 1034 aa14.03□□□□□ -0.16
NCAPD3-214ENST00000534548 RAPGEF2Q9Y4G8 1499 aa14.01□□□□□ -0.17
NCAPD3-214ENST00000534548 BAZ1BQ9UIG0 1483 aaKnown RBP14.01□□□□□ -0.17
NCAPD3-214ENST00000534548 RBM19Q9Y4C8 960 aaKnown RBP13.99□□□□□ -0.17
NCAPD3-214ENST00000534548 VPS8Q8N3P4 1428 aa13.98□□□□□ -0.17
NCAPD3-214ENST00000534548 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
NCAPD3-214ENST00000534548 UNC13AQ9UPW8 1703 aa13.97□□□□□ -0.17
NCAPD3-214ENST00000534548 DEKP35659 375 aaKnown RBP13.97□□□□□ -0.17
NCAPD3-214ENST00000534548 RTN4Q9NQC3 1192 aaKnown RBP13.96□□□□□ -0.17
NCAPD3-214ENST00000534548 KANK4Q5T7N3 995 aaPredicted RBP13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms