RNA–Protein interactions for RNA: ENST00000534234.5

COPB1-211, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 5

Gene COPB1, Length 1,584 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-211ENST00000534234 NISCHQ9Y2I1 1504 aa22■■□□□ 1.11
COPB1-211ENST00000534234 ABCC9O60706 1549 aa19.61■□□□□ 0.73
COPB1-211ENST00000534234 CCDC180Q9P1Z9 1646 aa19.58■□□□□ 0.73
COPB1-211ENST00000534234 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
COPB1-211ENST00000534234 RB1CC1Q8TDY2 1594 aa18.66■□□□□ 0.58
COPB1-211ENST00000534234 NACADO15069 1562 aa18.57■□□□□ 0.56
COPB1-211ENST00000534234 DNAJC5BQ9UF47 199 aa18.37■□□□□ 0.53
COPB1-211ENST00000534234 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
COPB1-211ENST00000534234 MYO15BQ96JP2 1530 aa18.35■□□□□ 0.53
COPB1-211ENST00000534234 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
COPB1-211ENST00000534234 DCAF1Q9Y4B6 1507 aa18.15■□□□□ 0.5
COPB1-211ENST00000534234 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
COPB1-211ENST00000534234 UNC13AQ9UPW8 1703 aa18.1■□□□□ 0.49
COPB1-211ENST00000534234 SCRIBQ14160 1630 aa17.91■□□□□ 0.46
COPB1-211ENST00000534234 SHROOM4Q9ULL8 1493 aa17.86■□□□□ 0.45
COPB1-211ENST00000534234 EIF4G1Q04637 1599 aaKnown RBP17.66■□□□□ 0.42
COPB1-211ENST00000534234 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
COPB1-211ENST00000534234 CECR2Q9BXF3 1484 aa17.65■□□□□ 0.42
COPB1-211ENST00000534234 AEBP2Q6ZN18 517 aaPredicted RBP17.29■□□□□ 0.36
COPB1-211ENST00000534234 NCAPD3P42695 1498 aa17.19■□□□□ 0.34
COPB1-211ENST00000534234 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
COPB1-211ENST00000534234 SMARCA4P51532 1647 aa17.09■□□□□ 0.33
COPB1-211ENST00000534234 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
COPB1-211ENST00000534234 BAZ1AQ9NRL2 1556 aaPredicted RBP17.06■□□□□ 0.32
COPB1-211ENST00000534234 HMGXB3Q12766 1538 aa17.01■□□□□ 0.31
COPB1-211ENST00000534234 BAZ1BQ9UIG0 1483 aaKnown RBP16.98■□□□□ 0.31
COPB1-211ENST00000534234 MROH2BQ7Z745 1585 aa16.96■□□□□ 0.31
COPB1-211ENST00000534234 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
COPB1-211ENST00000534234 PEG3Q9GZU2 1588 aa16.93■□□□□ 0.3
COPB1-211ENST00000534234 NESP48681 1621 aa16.87■□□□□ 0.29
COPB1-211ENST00000534234 CUX2O14529 1486 aa16.82■□□□□ 0.28
COPB1-211ENST00000534234 DNAJC5Q9H3Z4 198 aa16.79■□□□□ 0.28
COPB1-211ENST00000534234 LAMC3Q9Y6N6 1575 aa16.72■□□□□ 0.27
COPB1-211ENST00000534234 WIZO95785 1651 aa16.71■□□□□ 0.27
COPB1-211ENST00000534234 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
COPB1-211ENST00000534234 CADPSQ9ULU8 1353 aa16.7■□□□□ 0.26
COPB1-211ENST00000534234 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
COPB1-211ENST00000534234 RSF1Q96T23 1441 aaPredicted RBP16.69■□□□□ 0.26
COPB1-211ENST00000534234 THOC2Q8NI27 1593 aaKnown RBP16.59■□□□□ 0.25
COPB1-211ENST00000534234 KIF21AQ7Z4S6 1674 aa16.55■□□□□ 0.24
COPB1-211ENST00000534234 TOP2AP11388 1531 aaKnown RBP16.52■□□□□ 0.24
COPB1-211ENST00000534234 MRC2Q9UBG0 1479 aa16.51■□□□□ 0.23
COPB1-211ENST00000534234 CFTRP13569 1480 aa16.5■□□□□ 0.23
COPB1-211ENST00000534234 FANCD2Q9BXW9 1451 aa16.47■□□□□ 0.23
COPB1-211ENST00000534234 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
COPB1-211ENST00000534234 WDR62O43379 1518 aa16.43■□□□□ 0.22
COPB1-211ENST00000534234 CCDC88BA6NC98 1476 aa16.4■□□□□ 0.22
COPB1-211ENST00000534234 URB2Q14146 1524 aaKnown RBP16.31■□□□□ 0.2
COPB1-211ENST00000534234 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
COPB1-211ENST00000534234 TOPBP1Q92547 1522 aa16.16■□□□□ 0.18
COPB1-211ENST00000534234 ABCC8Q09428 1581 aa16.15■□□□□ 0.18
COPB1-211ENST00000534234 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
COPB1-211ENST00000534234 PRDM2Q13029 1718 aa16.14■□□□□ 0.17
COPB1-211ENST00000534234 SUPT5HO00267 1087 aaKnown RBP16.13■□□□□ 0.17
COPB1-211ENST00000534234 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
COPB1-211ENST00000534234 ZNF608Q9ULD9 1512 aaPredicted RBP16.11■□□□□ 0.17
COPB1-211ENST00000534234 DNMBPQ6XZF7 1577 aa16.08■□□□□ 0.16
COPB1-211ENST00000534234 AQRO60306 1485 aaKnown RBP eCLIP16.02■□□□□ 0.152e-7■■■■□ 26.6
COPB1-211ENST00000534234 POLA1P09884 1462 aaPredicted RBP16■□□□□ 0.15
COPB1-211ENST00000534234 SOGA1O94964 1423 aa15.99■□□□□ 0.15
COPB1-211ENST00000534234 RAD54L2Q9Y4B4 1467 aa15.98■□□□□ 0.15
COPB1-211ENST00000534234 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.15
COPB1-211ENST00000534234 TDRD9Q8NDG6 1382 aaKnown RBP15.96■□□□□ 0.15
COPB1-211ENST00000534234 FBLN2P98095 1184 aa15.96■□□□□ 0.14
COPB1-211ENST00000534234 EIF4G3O43432 1585 aaKnown RBP15.95■□□□□ 0.14
COPB1-211ENST00000534234 FGD5Q6ZNL6 1462 aa15.93■□□□□ 0.14
COPB1-211ENST00000534234 CUX1P39880 1505 aa15.91■□□□□ 0.14
COPB1-211ENST00000534234 CHMP7Q8WUX9 453 aaPredicted RBP15.84■□□□□ 0.13
COPB1-211ENST00000534234 ARHGEF11O15085 1522 aa15.82■□□□□ 0.12
COPB1-211ENST00000534234 CYB5RLQ6IPT4 315 aa15.81■□□□□ 0.12
COPB1-211ENST00000534234 RIMBP3CA6NJZ7 1639 aa15.81■□□□□ 0.12
COPB1-211ENST00000534234 RIMBP3BA6NNM3 1639 aa15.81■□□□□ 0.12
COPB1-211ENST00000534234 RIMBP3Q9UFD9 1639 aa15.81■□□□□ 0.12
COPB1-211ENST00000534234 SNAPC4Q5SXM2 1469 aa15.81■□□□□ 0.12
COPB1-211ENST00000534234 GRIN2BQ13224 1484 aa15.8■□□□□ 0.12
COPB1-211ENST00000534234 WDR97A6NE52 1622 aa15.78■□□□□ 0.12
COPB1-211ENST00000534234 CHD1O14646 1710 aa15.77■□□□□ 0.11
COPB1-211ENST00000534234 GAPVD1Q14C86 1478 aa15.77■□□□□ 0.11
COPB1-211ENST00000534234 MAGI1Q96QZ7 1491 aaPredicted RBP15.77■□□□□ 0.11
COPB1-211ENST00000534234 ABCA10Q8WWZ4 1543 aa15.75■□□□□ 0.11
COPB1-211ENST00000534234 WRNQ14191 1432 aaPredicted RBP eCLIP15.75■□□□□ 0.11
COPB1-211ENST00000534234 SYNJ2O15056 1496 aa15.72■□□□□ 0.11
COPB1-211ENST00000534234 ARAP1Q96P48 1450 aa15.67■□□□□ 0.1
COPB1-211ENST00000534234 SYNJ1O43426 1573 aa15.67■□□□□ 0.1
COPB1-211ENST00000534234 TOP2BQ02880 1626 aa15.66■□□□□ 0.1
COPB1-211ENST00000534234 CLASP1Q7Z460 1538 aa15.65■□□□□ 0.1
COPB1-211ENST00000534234 ABCA5Q8WWZ7 1642 aa15.64■□□□□ 0.09
COPB1-211ENST00000534234 BIVM-ERCC5R4GMW8 1640 aa15.63■□□□□ 0.09
COPB1-211ENST00000534234 PBRM1Q86U86 1689 aa15.61■□□□□ 0.09
COPB1-211ENST00000534234 TRHP20396 242 aaPredicted RBP15.6■□□□□ 0.09
COPB1-211ENST00000534234 GRIN2AQ12879 1464 aa15.58■□□□□ 0.09
COPB1-211ENST00000534234 FHAD1B1AJZ9 1412 aa15.57■□□□□ 0.08
COPB1-211ENST00000534234 ERICH3Q5RHP9 1530 aa15.53■□□□□ 0.08
COPB1-211ENST00000534234 NUP160Q12769 1436 aa15.53■□□□□ 0.08
COPB1-211ENST00000534234 ADAMTS12P58397 1594 aa15.52■□□□□ 0.08
COPB1-211ENST00000534234 CEP170Q5SW79 1584 aa15.48■□□□□ 0.07
COPB1-211ENST00000534234 JPH4Q96JJ6 628 aa15.46■□□□□ 0.07
COPB1-211ENST00000534234 IGF1RP08069 1367 aa15.45■□□□□ 0.06
COPB1-211ENST00000534234 KIF27Q86VH2 1401 aa15.44■□□□□ 0.06
COPB1-211ENST00000534234 ERCC6L2Q5T890 1561 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms