RNA–Protein interactions for RNA: ENST00000533595.5

SF3B2-214, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 5

Gene SF3B2, Length 1,081 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-214ENST00000533595 NISCHQ9Y2I1 1504 aa34.94■■■■□ 3.18
SF3B2-214ENST00000533595 CCDC180Q9P1Z9 1646 aa30.95■■■□□ 2.54
SF3B2-214ENST00000533595 ABCC9O60706 1549 aa30.07■■■□□ 2.4
SF3B2-214ENST00000533595 ZCCHC6Q5VYS8 1495 aaKnown RBP29.15■■■□□ 2.26
SF3B2-214ENST00000533595 DCAF8L2P0C7V8 631 aa29.13■■■□□ 2.25
SF3B2-214ENST00000533595 NACADO15069 1562 aa29.05■■■□□ 2.24
SF3B2-214ENST00000533595 RB1CC1Q8TDY2 1594 aa29.03■■■□□ 2.24
SF3B2-214ENST00000533595 MYO15BQ96JP2 1530 aa28.95■■■□□ 2.23
SF3B2-214ENST00000533595 DCAF1Q9Y4B6 1507 aa28.92■■■□□ 2.22
SF3B2-214ENST00000533595 UNC13AQ9UPW8 1703 aa28.35■■■□□ 2.13
SF3B2-214ENST00000533595 SCRIBQ14160 1630 aa28.26■■■□□ 2.11
SF3B2-214ENST00000533595 PABPN1Q86U42 306 aaKnown RBP eCLIP28.15■■■□□ 2.1
SF3B2-214ENST00000533595 BICRAQ9NZM4 1560 aa28.12■■■□□ 2.09
SF3B2-214ENST00000533595 SHROOM4Q9ULL8 1493 aa27.87■■■□□ 2.05
SF3B2-214ENST00000533595 DNAJC5BQ9UF47 199 aa27.52■■■□□ 2
SF3B2-214ENST00000533595 EIF4G1Q04637 1599 aaKnown RBP27.37■■□□□ 1.97
SF3B2-214ENST00000533595 CC2D2AQ9P2K1 1620 aa27.2■■□□□ 1.95
SF3B2-214ENST00000533595 CECR2Q9BXF3 1484 aa27.19■■□□□ 1.94
SF3B2-214ENST00000533595 BAZ1AQ9NRL2 1556 aaPredicted RBP27.07■■□□□ 1.92
SF3B2-214ENST00000533595 SMARCA4P51532 1647 aa27.05■■□□□ 1.92
SF3B2-214ENST00000533595 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
SF3B2-214ENST00000533595 ATAD2BQ9ULI0 1458 aa26.86■■□□□ 1.89
SF3B2-214ENST00000533595 SMARCA2P51531 1590 aa26.84■■□□□ 1.89
SF3B2-214ENST00000533595 NCAPD3P42695 1498 aa26.81■■□□□ 1.88
SF3B2-214ENST00000533595 PEG3Q9GZU2 1588 aa26.79■■□□□ 1.88
SF3B2-214ENST00000533595 RSF1Q96T23 1441 aaPredicted RBP26.72■■□□□ 1.87
SF3B2-214ENST00000533595 HMGXB3Q12766 1538 aa26.7■■□□□ 1.86
SF3B2-214ENST00000533595 BAZ1BQ9UIG0 1483 aaKnown RBP26.66■■□□□ 1.86
SF3B2-214ENST00000533595 WIZO95785 1651 aa26.64■■□□□ 1.86
SF3B2-214ENST00000533595 TOP2AP11388 1531 aaKnown RBP26.39■■□□□ 1.81
SF3B2-214ENST00000533595 SUPT5HO00267 1087 aaKnown RBP26.25■■□□□ 1.79
SF3B2-214ENST00000533595 NESP48681 1621 aa26.08■■□□□ 1.77
SF3B2-214ENST00000533595 CCDC88BA6NC98 1476 aa26.08■■□□□ 1.77
SF3B2-214ENST00000533595 LAMC3Q9Y6N6 1575 aa26.06■■□□□ 1.76
SF3B2-214ENST00000533595 CADPSQ9ULU8 1353 aa26.05■■□□□ 1.76
SF3B2-214ENST00000533595 CFTRP13569 1480 aa25.93■■□□□ 1.74
SF3B2-214ENST00000533595 ERCC6Q03468 1493 aa25.91■■□□□ 1.74
SF3B2-214ENST00000533595 PDS5BQ9NTI5 1447 aa25.89■■□□□ 1.74
SF3B2-214ENST00000533595 KIF21AQ7Z4S6 1674 aa25.77■■□□□ 1.72
SF3B2-214ENST00000533595 FANCD2Q9BXW9 1451 aa25.75■■□□□ 1.71
SF3B2-214ENST00000533595 PRDM2Q13029 1718 aa25.74■■□□□ 1.71
SF3B2-214ENST00000533595 CEP164Q9UPV0 1460 aa25.69■■□□□ 1.7
SF3B2-214ENST00000533595 THOC2Q8NI27 1593 aaKnown RBP25.63■■□□□ 1.69
SF3B2-214ENST00000533595 MRC2Q9UBG0 1479 aa25.6■■□□□ 1.69
SF3B2-214ENST00000533595 CUX2O14529 1486 aa25.53■■□□□ 1.68
SF3B2-214ENST00000533595 WDR62O43379 1518 aa25.5■■□□□ 1.67
SF3B2-214ENST00000533595 URB2Q14146 1524 aaKnown RBP25.47■■□□□ 1.67
SF3B2-214ENST00000533595 DNAJC5Q9H3Z4 198 aa25.38■■□□□ 1.65
SF3B2-214ENST00000533595 ABCC8Q09428 1581 aa25.38■■□□□ 1.65
SF3B2-214ENST00000533595 TOPBP1Q92547 1522 aa25.36■■□□□ 1.65
SF3B2-214ENST00000533595 DNMBPQ6XZF7 1577 aa25.35■■□□□ 1.65
SF3B2-214ENST00000533595 CUX1P39880 1505 aa25.25■■□□□ 1.63
SF3B2-214ENST00000533595 WRNQ14191 1432 aaPredicted RBP eCLIP25.19■■□□□ 1.62
SF3B2-214ENST00000533595 POLA1P09884 1462 aaPredicted RBP25.16■■□□□ 1.62
SF3B2-214ENST00000533595 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
SF3B2-214ENST00000533595 FGD5Q6ZNL6 1462 aa25.14■■□□□ 1.61
SF3B2-214ENST00000533595 TOP2BQ02880 1626 aa25.1■■□□□ 1.61
SF3B2-214ENST00000533595 SYNJ1O43426 1573 aa25.1■■□□□ 1.61
SF3B2-214ENST00000533595 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
SF3B2-214ENST00000533595 SOGA1O94964 1423 aa25.07■■□□□ 1.6
SF3B2-214ENST00000533595 TARBP1Q13395 1621 aaKnown RBP25.05■■□□□ 1.6
SF3B2-214ENST00000533595 RAD54L2Q9Y4B4 1467 aa25.04■■□□□ 1.6
SF3B2-214ENST00000533595 ZNF608Q9ULD9 1512 aaPredicted RBP25■■□□□ 1.59
SF3B2-214ENST00000533595 EIF4G3O43432 1585 aaKnown RBP24.91■■□□□ 1.58
SF3B2-214ENST00000533595 AQRO60306 1485 aaKnown RBP eCLIP24.9■■□□□ 1.582e-7■■■■□ 20
SF3B2-214ENST00000533595 ABCA10Q8WWZ4 1543 aa24.9■■□□□ 1.58
SF3B2-214ENST00000533595 TDRD9Q8NDG6 1382 aaKnown RBP24.9■■□□□ 1.58
SF3B2-214ENST00000533595 WDR97A6NE52 1622 aa24.89■■□□□ 1.57
SF3B2-214ENST00000533595 GAPVD1Q14C86 1478 aa24.78■■□□□ 1.56
SF3B2-214ENST00000533595 TRIM41Q8WV44 630 aa24.78■■□□□ 1.56
SF3B2-214ENST00000533595 ABCA5Q8WWZ7 1642 aa24.77■■□□□ 1.56
SF3B2-214ENST00000533595 GRIN2BQ13224 1484 aa24.75■■□□□ 1.55
SF3B2-214ENST00000533595 PBRM1Q86U86 1689 aa24.69■■□□□ 1.54
SF3B2-214ENST00000533595 SNAPC4Q5SXM2 1469 aa24.67■■□□□ 1.54
SF3B2-214ENST00000533595 MAGI1Q96QZ7 1491 aaPredicted RBP24.65■■□□□ 1.54
SF3B2-214ENST00000533595 KIF27Q86VH2 1401 aa24.65■■□□□ 1.54
SF3B2-214ENST00000533595 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
SF3B2-214ENST00000533595 ERICH3Q5RHP9 1530 aa24.61■■□□□ 1.53
SF3B2-214ENST00000533595 FBLN2P98095 1184 aa24.58■■□□□ 1.53
SF3B2-214ENST00000533595 SYNJ2O15056 1496 aa24.56■■□□□ 1.52
SF3B2-214ENST00000533595 OSCARQ8IYS5 282 aa24.55■■□□□ 1.52
SF3B2-214ENST00000533595 CHMP7Q8WUX9 453 aaPredicted RBP24.55■■□□□ 1.52
SF3B2-214ENST00000533595 CHD1O14646 1710 aa24.55■■□□□ 1.52
SF3B2-214ENST00000533595 IGF1RP08069 1367 aa24.52■■□□□ 1.52
SF3B2-214ENST00000533595 ADAMTS12P58397 1594 aa24.51■■□□□ 1.51
SF3B2-214ENST00000533595 FHAD1B1AJZ9 1412 aa24.51■■□□□ 1.51
SF3B2-214ENST00000533595 RUSC2Q8N2Y8 1516 aa24.48■■□□□ 1.51
SF3B2-214ENST00000533595 CUL7Q14999 1698 aa24.43■■□□□ 1.5
SF3B2-214ENST00000533595 GRIN2AQ12879 1464 aa24.42■■□□□ 1.5
SF3B2-214ENST00000533595 CARMIL1Q5VZK9 1371 aa24.39■■□□□ 1.49
SF3B2-214ENST00000533595 EEA1Q15075 1411 aa24.34■■□□□ 1.49
SF3B2-214ENST00000533595 NUP160Q12769 1436 aa24.3■■□□□ 1.48
SF3B2-214ENST00000533595 CLASP1Q7Z460 1538 aa24.29■■□□□ 1.48
SF3B2-214ENST00000533595 CSRNP3Q8WYN3 585 aa24.28■■□□□ 1.48
SF3B2-214ENST00000533595 CEP170Q5SW79 1584 aa24.28■■□□□ 1.48
SF3B2-214ENST00000533595 FAM9AQ8IZU1 332 aaPredicted RBP24.26■■□□□ 1.47
SF3B2-214ENST00000533595 RAPGEF2Q9Y4G8 1499 aa24.26■■□□□ 1.47
SF3B2-214ENST00000533595 PRXQ9BXM0 1461 aa24.23■■□□□ 1.47
SF3B2-214ENST00000533595 KIAA0586Q9BVV6 1533 aa24.14■■□□□ 1.45
SF3B2-214ENST00000533595 ARHGEF11O15085 1522 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms