RNA–Protein interactions for RNA: ENST00000533421.2

SF3B2-213, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 3

Gene SF3B2, Length 407 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-213ENST00000533421 NISCHQ9Y2I1 1504 aa29.81■■■□□ 2.36
SF3B2-213ENST00000533421 CCDC180Q9P1Z9 1646 aa26.67■■□□□ 1.86
SF3B2-213ENST00000533421 ABCC9O60706 1549 aa26.19■■□□□ 1.78
SF3B2-213ENST00000533421 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
SF3B2-213ENST00000533421 NACADO15069 1562 aa25.12■■□□□ 1.61
SF3B2-213ENST00000533421 DCAF8L2P0C7V8 631 aa25.01■■□□□ 1.59
SF3B2-213ENST00000533421 MYO15BQ96JP2 1530 aa24.92■■□□□ 1.58
SF3B2-213ENST00000533421 ZCCHC6Q5VYS8 1495 aaKnown RBP24.78■■□□□ 1.56
SF3B2-213ENST00000533421 DCAF1Q9Y4B6 1507 aa24.71■■□□□ 1.55
SF3B2-213ENST00000533421 DNAJC5BQ9UF47 199 aa24.68■■□□□ 1.54
SF3B2-213ENST00000533421 UNC13AQ9UPW8 1703 aa24.52■■□□□ 1.52
SF3B2-213ENST00000533421 PABPN1Q86U42 306 aaKnown RBP eCLIP24.41■■□□□ 1.5
SF3B2-213ENST00000533421 BICRAQ9NZM4 1560 aa24.32■■□□□ 1.48
SF3B2-213ENST00000533421 SHROOM4Q9ULL8 1493 aa24.24■■□□□ 1.47
SF3B2-213ENST00000533421 SCRIBQ14160 1630 aa24.24■■□□□ 1.47
SF3B2-213ENST00000533421 EIF4G1Q04637 1599 aaKnown RBP23.76■■□□□ 1.39
SF3B2-213ENST00000533421 CC2D2AQ9P2K1 1620 aa23.71■■□□□ 1.39
SF3B2-213ENST00000533421 CECR2Q9BXF3 1484 aa23.6■■□□□ 1.37
SF3B2-213ENST00000533421 SMARCA4P51532 1647 aa23.19■■□□□ 1.3
SF3B2-213ENST00000533421 BAZ1AQ9NRL2 1556 aaPredicted RBP23.18■■□□□ 1.3
SF3B2-213ENST00000533421 SMARCA2P51531 1590 aa23.14■■□□□ 1.3
SF3B2-213ENST00000533421 NCAPD3P42695 1498 aa23.14■■□□□ 1.29
SF3B2-213ENST00000533421 ATAD2BQ9ULI0 1458 aa23.1■■□□□ 1.29
SF3B2-213ENST00000533421 HMGXB3Q12766 1538 aa23.04■■□□□ 1.28
SF3B2-213ENST00000533421 PEG3Q9GZU2 1588 aa22.97■■□□□ 1.27
SF3B2-213ENST00000533421 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
SF3B2-213ENST00000533421 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
SF3B2-213ENST00000533421 ERCC6Q03468 1493 aa22.69■■□□□ 1.22
SF3B2-213ENST00000533421 WIZO95785 1651 aa22.67■■□□□ 1.22
SF3B2-213ENST00000533421 DNAJC5Q9H3Z4 198 aa22.65■■□□□ 1.22
SF3B2-213ENST00000533421 LAMC3Q9Y6N6 1575 aa22.62■■□□□ 1.21
SF3B2-213ENST00000533421 RSF1Q96T23 1441 aaPredicted RBP22.6■■□□□ 1.21
SF3B2-213ENST00000533421 NESP48681 1621 aa22.56■■□□□ 1.2
SF3B2-213ENST00000533421 CUX2O14529 1486 aa22.54■■□□□ 1.2
SF3B2-213ENST00000533421 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
SF3B2-213ENST00000533421 TOP2AP11388 1531 aaKnown RBP22.48■■□□□ 1.19
SF3B2-213ENST00000533421 CADPSQ9ULU8 1353 aa22.46■■□□□ 1.19
SF3B2-213ENST00000533421 KIF21AQ7Z4S6 1674 aa22.34■■□□□ 1.17
SF3B2-213ENST00000533421 THOC2Q8NI27 1593 aaKnown RBP22.33■■□□□ 1.16
SF3B2-213ENST00000533421 CFTRP13569 1480 aa22.28■■□□□ 1.16
SF3B2-213ENST00000533421 CEP164Q9UPV0 1460 aa22.23■■□□□ 1.15
SF3B2-213ENST00000533421 MRC2Q9UBG0 1479 aa22.22■■□□□ 1.15
SF3B2-213ENST00000533421 FANCD2Q9BXW9 1451 aa22.21■■□□□ 1.15
SF3B2-213ENST00000533421 CCDC88BA6NC98 1476 aa22.17■■□□□ 1.14
SF3B2-213ENST00000533421 WDR62O43379 1518 aa22.14■■□□□ 1.13
SF3B2-213ENST00000533421 PRDM2Q13029 1718 aa22.14■■□□□ 1.13
SF3B2-213ENST00000533421 SUPT5HO00267 1087 aaKnown RBP21.96■■□□□ 1.11
SF3B2-213ENST00000533421 URB2Q14146 1524 aaKnown RBP21.94■■□□□ 1.1
SF3B2-213ENST00000533421 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
SF3B2-213ENST00000533421 TOPBP1Q92547 1522 aa21.8■■□□□ 1.08
SF3B2-213ENST00000533421 DNMBPQ6XZF7 1577 aa21.8■■□□□ 1.08
SF3B2-213ENST00000533421 IFT140Q96RY7 1462 aa21.77■■□□□ 1.08
SF3B2-213ENST00000533421 TRIM41Q8WV44 630 aa21.61■■□□□ 1.05
SF3B2-213ENST00000533421 POLA1P09884 1462 aaPredicted RBP21.6■■□□□ 1.05
SF3B2-213ENST00000533421 ZNF608Q9ULD9 1512 aaPredicted RBP21.58■■□□□ 1.04
SF3B2-213ENST00000533421 TARBP1Q13395 1621 aaKnown RBP21.56■■□□□ 1.04
SF3B2-213ENST00000533421 EIF4G3O43432 1585 aaKnown RBP21.56■■□□□ 1.04
SF3B2-213ENST00000533421 OSCARQ8IYS5 282 aa21.55■■□□□ 1.04
SF3B2-213ENST00000533421 SOGA1O94964 1423 aa21.54■■□□□ 1.04
SF3B2-213ENST00000533421 CUX1P39880 1505 aa21.53■■□□□ 1.04
SF3B2-213ENST00000533421 FGD5Q6ZNL6 1462 aa21.52■■□□□ 1.04
SF3B2-213ENST00000533421 WDR97A6NE52 1622 aa21.51■■□□□ 1.03
SF3B2-213ENST00000533421 AQRO60306 1485 aaKnown RBP eCLIP21.46■■□□□ 1.034e-7■■■■□ 19.3
SF3B2-213ENST00000533421 RAD54L2Q9Y4B4 1467 aa21.46■■□□□ 1.03
SF3B2-213ENST00000533421 TDRD9Q8NDG6 1382 aaKnown RBP21.39■■□□□ 1.02
SF3B2-213ENST00000533421 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
SF3B2-213ENST00000533421 TOP2BQ02880 1626 aa21.34■■□□□ 1.01
SF3B2-213ENST00000533421 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
SF3B2-213ENST00000533421 GRIN2BQ13224 1484 aa21.33■■□□□ 1.01
SF3B2-213ENST00000533421 ABCA10Q8WWZ4 1543 aa21.33■■□□□ 1
SF3B2-213ENST00000533421 CHD1O14646 1710 aa21.32■■□□□ 1
SF3B2-213ENST00000533421 MAGI1Q96QZ7 1491 aaPredicted RBP21.32■■□□□ 1
SF3B2-213ENST00000533421 FBLN2P98095 1184 aa21.31■■□□□ 1
SF3B2-213ENST00000533421 GAPVD1Q14C86 1478 aa21.29■■□□□ 1
SF3B2-213ENST00000533421 SNAPC4Q5SXM2 1469 aa21.29■■□□□ 1
SF3B2-213ENST00000533421 RIMBP3CA6NJZ7 1639 aa21.27■■□□□ 1
SF3B2-213ENST00000533421 RIMBP3BA6NNM3 1639 aa21.27■■□□□ 1
SF3B2-213ENST00000533421 RIMBP3Q9UFD9 1639 aa21.27■■□□□ 1
SF3B2-213ENST00000533421 SYNJ1O43426 1573 aa21.27■□□□□ 0.99
SF3B2-213ENST00000533421 PBRM1Q86U86 1689 aa21.25■□□□□ 0.99
SF3B2-213ENST00000533421 CHMP7Q8WUX9 453 aaPredicted RBP21.25■□□□□ 0.99
SF3B2-213ENST00000533421 ABCA5Q8WWZ7 1642 aa21.24■□□□□ 0.99
SF3B2-213ENST00000533421 SYNJ2O15056 1496 aa21.21■□□□□ 0.99
SF3B2-213ENST00000533421 ARHGEF11O15085 1522 aa21.15■□□□□ 0.98
SF3B2-213ENST00000533421 ERICH3Q5RHP9 1530 aa21.1■□□□□ 0.97
SF3B2-213ENST00000533421 CLASP1Q7Z460 1538 aa21.08■□□□□ 0.96
SF3B2-213ENST00000533421 ADAMTS12P58397 1594 aa21.06■□□□□ 0.96
SF3B2-213ENST00000533421 FHAD1B1AJZ9 1412 aa21.05■□□□□ 0.96
SF3B2-213ENST00000533421 GRIN2AQ12879 1464 aa21.04■□□□□ 0.96
SF3B2-213ENST00000533421 KIF27Q86VH2 1401 aa20.98■□□□□ 0.95
SF3B2-213ENST00000533421 CYB5RLQ6IPT4 315 aa20.96■□□□□ 0.95
SF3B2-213ENST00000533421 NUP160Q12769 1436 aa20.94■□□□□ 0.94
SF3B2-213ENST00000533421 ARAP1Q96P48 1450 aa20.94■□□□□ 0.94
SF3B2-213ENST00000533421 CUL7Q14999 1698 aa20.89■□□□□ 0.94
SF3B2-213ENST00000533421 CEP170Q5SW79 1584 aa20.89■□□□□ 0.94
SF3B2-213ENST00000533421 IGF1RP08069 1367 aa20.84■□□□□ 0.93
SF3B2-213ENST00000533421 SHROOM2Q13796 1616 aa20.8■□□□□ 0.92
SF3B2-213ENST00000533421 CARMIL1Q5VZK9 1371 aa20.75■□□□□ 0.91
SF3B2-213ENST00000533421 RUSC2Q8N2Y8 1516 aa20.75■□□□□ 0.91
SF3B2-213ENST00000533421 JPH4Q96JJ6 628 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 281.3 ms