RNA–Protein interactions for RNA: ENST00000533413.5

CKAP5-212, Transcript of cytoskeleton associated protein 5, humanhuman

TSL 1 (best)

Gene CKAP5, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP5-212ENST00000533413 NISCHQ9Y2I1 1504 aa11.67□□□□□ -0.54
CKAP5-212ENST00000533413 SLC24A1O60721 1099 aa10.61□□□□□ -0.71
CKAP5-212ENST00000533413 CCDC180Q9P1Z9 1646 aa10.5□□□□□ -0.73
CKAP5-212ENST00000533413 ABCC9O60706 1549 aa9.99□□□□□ -0.81
CKAP5-212ENST00000533413 EHMT2Q96KQ7 1210 aa9.82□□□□□ -0.84
CKAP5-212ENST00000533413 MYO15BQ96JP2 1530 aa9.8□□□□□ -0.84
CKAP5-212ENST00000533413 NACADO15069 1562 aa9.8□□□□□ -0.84
CKAP5-212ENST00000533413 RB1CC1Q8TDY2 1594 aa9.79□□□□□ -0.84
CKAP5-212ENST00000533413 DCAF1Q9Y4B6 1507 aa9.76□□□□□ -0.85
CKAP5-212ENST00000533413 ZCCHC6Q5VYS8 1495 aaKnown RBP9.74□□□□□ -0.85
CKAP5-212ENST00000533413 PLPPR3Q6T4P5 718 aa9.69□□□□□ -0.86
CKAP5-212ENST00000533413 DAXXQ9UER7 740 aaPredicted RBP9.62□□□□□ -0.87
CKAP5-212ENST00000533413 UNC13AQ9UPW8 1703 aa9.56□□□□□ -0.88
CKAP5-212ENST00000533413 RTN4Q9NQC3 1192 aaKnown RBP9.54□□□□□ -0.88
CKAP5-212ENST00000533413 DCAF8L2P0C7V8 631 aa9.5□□□□□ -0.89
CKAP5-212ENST00000533413 SHROOM4Q9ULL8 1493 aa9.5□□□□□ -0.89
CKAP5-212ENST00000533413 PRKCSHP14314 528 aaPredicted RBP9.49□□□□□ -0.89
CKAP5-212ENST00000533413 AEBP2Q6ZN18 517 aaPredicted RBP9.46□□□□□ -0.89
CKAP5-212ENST00000533413 CHIC1Q5VXU3 224 aa9.46□□□□□ -0.9
CKAP5-212ENST00000533413 BICRAQ9NZM4 1560 aa9.43□□□□□ -0.9
CKAP5-212ENST00000533413 SCRIBQ14160 1630 aa9.42□□□□□ -0.9
CKAP5-212ENST00000533413 NCBP3Q53F19 620 aaKnown RBP9.37□□□□□ -0.91
CKAP5-212ENST00000533413 APLP2Q06481 763 aa9.32□□□□□ -0.92
CKAP5-212ENST00000533413 MYT1Q01538 1121 aa9.31□□□□□ -0.92
CKAP5-212ENST00000533413 TTBK1Q5TCY1 1321 aaPredicted RBP9.27□□□□□ -0.93
CKAP5-212ENST00000533413 PABPN1Q86U42 306 aaKnown RBP eCLIP9.26□□□□□ -0.93
CKAP5-212ENST00000533413 PELP1Q8IZL8 1130 aaKnown RBP9.23□□□□□ -0.93
CKAP5-212ENST00000533413 ERICH6Q7L0X2 663 aa9.19□□□□□ -0.94
CKAP5-212ENST00000533413 EIF4G1Q04637 1599 aaKnown RBP9.19□□□□□ -0.94
CKAP5-212ENST00000533413 CC2D2AQ9P2K1 1620 aa9.13□□□□□ -0.95
CKAP5-212ENST00000533413 KCNA4P22459 653 aa9.11□□□□□ -0.95
CKAP5-212ENST00000533413 TIMELESSQ9UNS1 1208 aa9.1□□□□□ -0.95
CKAP5-212ENST00000533413 BAZ1AQ9NRL2 1556 aaPredicted RBP9.08□□□□□ -0.96
CKAP5-212ENST00000533413 AMER1Q5JTC6 1135 aaPredicted RBP9.08□□□□□ -0.96
CKAP5-212ENST00000533413 SMARCA4P51532 1647 aa9.07□□□□□ -0.96
CKAP5-212ENST00000533413 DNAJC5BQ9UF47 199 aa9.03□□□□□ -0.96
CKAP5-212ENST00000533413 SMARCA2P51531 1590 aa9.03□□□□□ -0.96
CKAP5-212ENST00000533413 PEG3Q9GZU2 1588 aa9.03□□□□□ -0.96
CKAP5-212ENST00000533413 CECR2Q9BXF3 1484 aa9.03□□□□□ -0.96
CKAP5-212ENST00000533413 HMGXB3Q12766 1538 aa9.01□□□□□ -0.97
CKAP5-212ENST00000533413 CSRNP3Q8WYN3 585 aa8.99□□□□□ -0.97
CKAP5-212ENST00000533413 NCAPD3P42695 1498 aa8.98□□□□□ -0.97
CKAP5-212ENST00000533413 ARXQ96QS3 562 aa8.97□□□□□ -0.97
CKAP5-212ENST00000533413 ATAD2BQ9ULI0 1458 aa8.96□□□□□ -0.98
CKAP5-212ENST00000533413 TULP1O00294 542 aaPredicted RBP8.94□□□□□ -0.98
CKAP5-212ENST00000533413 MROH2BQ7Z745 1585 aa8.94□□□□□ -0.98
CKAP5-212ENST00000533413 BAZ1BQ9UIG0 1483 aaKnown RBP8.91□□□□□ -0.98
CKAP5-212ENST00000533413 KLHL34Q8N239 644 aa8.89□□□□□ -0.99
CKAP5-212ENST00000533413 WIZO95785 1651 aa8.86□□□□□ -0.99
CKAP5-212ENST00000533413 EIF5BO60841 1220 aaKnown RBP8.86□□□□□ -0.99
CKAP5-212ENST00000533413 RSF1Q96T23 1441 aaPredicted RBP8.84□□□□□ -0.99
CKAP5-212ENST00000533413 TOP2AP11388 1531 aaKnown RBP8.84□□□□□ -0.99
CKAP5-212ENST00000533413 TAOK2Q9UL54 1235 aa8.82□□□□□ -1
CKAP5-212ENST00000533413 RANGAP1P46060 587 aaPredicted RBP8.81□□□□□ -1
CKAP5-212ENST00000533413 LAMC3Q9Y6N6 1575 aa8.8□□□□□ -1
CKAP5-212ENST00000533413 SUPT5HO00267 1087 aaKnown RBP8.79□□□□□ -1
CKAP5-212ENST00000533413 PRDM2Q13029 1718 aa8.76□□□□□ -1.01
CKAP5-212ENST00000533413 PLEKHG5O94827 1062 aa8.73□□□□□ -1.01
CKAP5-212ENST00000533413 PODXL2Q9NZ53 605 aa8.73□□□□□ -1.01
CKAP5-212ENST00000533413 TPRNQ4KMQ1 711 aa8.73□□□□□ -1.01
CKAP5-212ENST00000533413 HOMEZQ8IX15 550 aa8.72□□□□□ -1.01
CKAP5-212ENST00000533413 HRCP23327 699 aa8.72□□□□□ -1.01
CKAP5-212ENST00000533413 PHF23Q9BUL5 403 aaPredicted RBP8.72□□□□□ -1.01
CKAP5-212ENST00000533413 CADPSQ9ULU8 1353 aa8.69□□□□□ -1.02
CKAP5-212ENST00000533413 PDS5BQ9NTI5 1447 aa8.68□□□□□ -1.02
CKAP5-212ENST00000533413 CFTRP13569 1480 aa8.67□□□□□ -1.02
CKAP5-212ENST00000533413 ERCC6Q03468 1493 aa8.67□□□□□ -1.02
CKAP5-212ENST00000533413 KIF21AQ7Z4S6 1674 aa8.67□□□□□ -1.02
CKAP5-212ENST00000533413 CUX2O14529 1486 aa8.66□□□□□ -1.02
CKAP5-212ENST00000533413 CCDC88BA6NC98 1476 aa8.65□□□□□ -1.02
CKAP5-212ENST00000533413 NESP48681 1621 aa8.65□□□□□ -1.02
CKAP5-212ENST00000533413 THOC2Q8NI27 1593 aaKnown RBP8.65□□□□□ -1.03
CKAP5-212ENST00000533413 CEP164Q9UPV0 1460 aa8.61□□□□□ -1.03
CKAP5-212ENST00000533413 MRC2Q9UBG0 1479 aa8.6□□□□□ -1.03
CKAP5-212ENST00000533413 WDR62O43379 1518 aa8.59□□□□□ -1.03
CKAP5-212ENST00000533413 FANCD2Q9BXW9 1451 aa8.59□□□□□ -1.03
CKAP5-212ENST00000533413 BCANQ96GW7 911 aa8.58□□□□□ -1.04
CKAP5-212ENST00000533413 PCGF6Q9BYE7 350 aa8.56□□□□□ -1.04
CKAP5-212ENST00000533413 ABCC8Q09428 1581 aa8.56□□□□□ -1.04
CKAP5-212ENST00000533413 GTF3C3Q9Y5Q9 886 aa8.54□□□□□ -1.04
CKAP5-212ENST00000533413 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.05
CKAP5-212ENST00000533413 URB2Q14146 1524 aaKnown RBP8.49□□□□□ -1.05
CKAP5-212ENST00000533413 NPM2Q86SE8 214 aaKnown RBP8.49□□□□□ -1.05
CKAP5-212ENST00000533413 WDR97A6NE52 1622 aa8.48□□□□□ -1.05
CKAP5-212ENST00000533413 TOPBP1Q92547 1522 aa8.47□□□□□ -1.05
CKAP5-212ENST00000533413 PLCB2Q00722 1185 aa8.45□□□□□ -1.06
CKAP5-212ENST00000533413 BCL11AQ9H165 835 aa8.45□□□□□ -1.06
CKAP5-212ENST00000533413 IFT140Q96RY7 1462 aa8.44□□□□□ -1.06
CKAP5-212ENST00000533413 HAP1P54257 671 aaPredicted RBP8.44□□□□□ -1.06
CKAP5-212ENST00000533413 C14orf37Q86TY3 774 aa8.44□□□□□ -1.06
CKAP5-212ENST00000533413 PPARGC1BQ86YN6 1023 aaKnown RBP8.44□□□□□ -1.06
CKAP5-212ENST00000533413 BIVM-ERCC5R4GMW8 1640 aa8.44□□□□□ -1.06
CKAP5-212ENST00000533413 TARBP1Q13395 1621 aaKnown RBP8.41□□□□□ -1.06
CKAP5-212ENST00000533413 SCAF1Q9H7N4 1312 aaKnown RBP8.41□□□□□ -1.06
CKAP5-212ENST00000533413 TOP2BQ02880 1626 aa8.41□□□□□ -1.06
CKAP5-212ENST00000533413 CUX1P39880 1505 aa8.4□□□□□ -1.06
CKAP5-212ENST00000533413 SLC4A1APQ9BWU0 796 aaKnown RBP8.39□□□□□ -1.07
CKAP5-212ENST00000533413 POLA1P09884 1462 aaPredicted RBP8.38□□□□□ -1.07
CKAP5-212ENST00000533413 EIF4G3O43432 1585 aaKnown RBP8.37□□□□□ -1.07
CKAP5-212ENST00000533413 FGD5Q6ZNL6 1462 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms