RNA–Protein interactions for RNA: ENST00000532375.5

TSPAN4-220, Transcript of tetraspanin 4, humanhuman

TSL 5

Gene TSPAN4, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-220ENST00000532375 NISCHQ9Y2I1 1504 aa34.03■■■■□ 3.04
TSPAN4-220ENST00000532375 CCDC180Q9P1Z9 1646 aa30.18■■■□□ 2.42
TSPAN4-220ENST00000532375 ABCC9O60706 1549 aa29.51■■■□□ 2.32
TSPAN4-220ENST00000532375 NACADO15069 1562 aa28.38■■■□□ 2.13
TSPAN4-220ENST00000532375 RB1CC1Q8TDY2 1594 aa28.37■■■□□ 2.13
TSPAN4-220ENST00000532375 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
TSPAN4-220ENST00000532375 DCAF8L2P0C7V8 631 aa28.32■■■□□ 2.12
TSPAN4-220ENST00000532375 MYO15BQ96JP2 1530 aa28.26■■■□□ 2.11
TSPAN4-220ENST00000532375 DCAF1Q9Y4B6 1507 aa28.16■■■□□ 2.1
TSPAN4-220ENST00000532375 UNC13AQ9UPW8 1703 aa27.83■■■□□ 2.05
TSPAN4-220ENST00000532375 BICRAQ9NZM4 1560 aa27.64■■■□□ 2.01
TSPAN4-220ENST00000532375 PABPN1Q86U42 306 aaKnown RBP eCLIP27.62■■■□□ 2.01
TSPAN4-220ENST00000532375 SCRIBQ14160 1630 aa27.52■■■□□ 2
TSPAN4-220ENST00000532375 SHROOM4Q9ULL8 1493 aa27.24■■□□□ 1.95
TSPAN4-220ENST00000532375 DNAJC5BQ9UF47 199 aa27.21■■□□□ 1.95
TSPAN4-220ENST00000532375 EIF4G1Q04637 1599 aaKnown RBP26.84■■□□□ 1.89
TSPAN4-220ENST00000532375 CC2D2AQ9P2K1 1620 aa26.72■■□□□ 1.87
TSPAN4-220ENST00000532375 CECR2Q9BXF3 1484 aa26.54■■□□□ 1.84
TSPAN4-220ENST00000532375 SMARCA4P51532 1647 aa26.37■■□□□ 1.81
TSPAN4-220ENST00000532375 BAZ1AQ9NRL2 1556 aaPredicted RBP26.32■■□□□ 1.8
TSPAN4-220ENST00000532375 NCAPD3P42695 1498 aa26.24■■□□□ 1.79
TSPAN4-220ENST00000532375 ATAD2BQ9ULI0 1458 aa26.24■■□□□ 1.79
TSPAN4-220ENST00000532375 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
TSPAN4-220ENST00000532375 SMARCA2P51531 1590 aa26.15■■□□□ 1.78
TSPAN4-220ENST00000532375 PEG3Q9GZU2 1588 aa26.15■■□□□ 1.78
TSPAN4-220ENST00000532375 HMGXB3Q12766 1538 aa26.06■■□□□ 1.76
TSPAN4-220ENST00000532375 BAZ1BQ9UIG0 1483 aaKnown RBP25.96■■□□□ 1.75
TSPAN4-220ENST00000532375 RSF1Q96T23 1441 aaPredicted RBP25.96■■□□□ 1.75
TSPAN4-220ENST00000532375 WIZO95785 1651 aa25.94■■□□□ 1.74
TSPAN4-220ENST00000532375 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
TSPAN4-220ENST00000532375 NESP48681 1621 aa25.59■■□□□ 1.69
TSPAN4-220ENST00000532375 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
TSPAN4-220ENST00000532375 CADPSQ9ULU8 1353 aa25.45■■□□□ 1.67
TSPAN4-220ENST00000532375 CCDC88BA6NC98 1476 aa25.37■■□□□ 1.65
TSPAN4-220ENST00000532375 ERCC6Q03468 1493 aa25.35■■□□□ 1.65
TSPAN4-220ENST00000532375 CFTRP13569 1480 aa25.32■■□□□ 1.64
TSPAN4-220ENST00000532375 PDS5BQ9NTI5 1447 aa25.29■■□□□ 1.64
TSPAN4-220ENST00000532375 KIF21AQ7Z4S6 1674 aa25.26■■□□□ 1.63
TSPAN4-220ENST00000532375 SUPT5HO00267 1087 aaKnown RBP25.23■■□□□ 1.63
TSPAN4-220ENST00000532375 THOC2Q8NI27 1593 aaKnown RBP25.18■■□□□ 1.62
TSPAN4-220ENST00000532375 CUX2O14529 1486 aa25.14■■□□□ 1.61
TSPAN4-220ENST00000532375 FANCD2Q9BXW9 1451 aa25.13■■□□□ 1.61
TSPAN4-220ENST00000532375 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
TSPAN4-220ENST00000532375 CEP164Q9UPV0 1460 aa25.06■■□□□ 1.6
TSPAN4-220ENST00000532375 MRC2Q9UBG0 1479 aa25.04■■□□□ 1.6
TSPAN4-220ENST00000532375 WDR62O43379 1518 aa24.98■■□□□ 1.59
TSPAN4-220ENST00000532375 URB2Q14146 1524 aaKnown RBP24.92■■□□□ 1.58
TSPAN4-220ENST00000532375 TOPBP1Q92547 1522 aa24.76■■□□□ 1.55
TSPAN4-220ENST00000532375 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
TSPAN4-220ENST00000532375 DNMBPQ6XZF7 1577 aa24.7■■□□□ 1.54
TSPAN4-220ENST00000532375 DNAJC5Q9H3Z4 198 aa24.61■■□□□ 1.53
TSPAN4-220ENST00000532375 CUX1P39880 1505 aa24.6■■□□□ 1.53
TSPAN4-220ENST00000532375 IFT140Q96RY7 1462 aa24.56■■□□□ 1.52
TSPAN4-220ENST00000532375 POLA1P09884 1462 aaPredicted RBP24.55■■□□□ 1.52
TSPAN4-220ENST00000532375 TARBP1Q13395 1621 aaKnown RBP24.51■■□□□ 1.51
TSPAN4-220ENST00000532375 ZNF608Q9ULD9 1512 aaPredicted RBP24.5■■□□□ 1.51
TSPAN4-220ENST00000532375 FGD5Q6ZNL6 1462 aa24.48■■□□□ 1.51
TSPAN4-220ENST00000532375 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.51
TSPAN4-220ENST00000532375 SOGA1O94964 1423 aa24.44■■□□□ 1.5
TSPAN4-220ENST00000532375 WRNQ14191 1432 aaPredicted RBP eCLIP24.41■■□□□ 1.5
TSPAN4-220ENST00000532375 SYNJ1O43426 1573 aa24.38■■□□□ 1.49
TSPAN4-220ENST00000532375 TOP2BQ02880 1626 aa24.37■■□□□ 1.49
TSPAN4-220ENST00000532375 BIVM-ERCC5R4GMW8 1640 aa24.37■■□□□ 1.49
TSPAN4-220ENST00000532375 AQRO60306 1485 aaKnown RBP eCLIP24.36■■□□□ 1.494e-8■■■■■ 31.9
TSPAN4-220ENST00000532375 EIF4G3O43432 1585 aaKnown RBP24.35■■□□□ 1.49
TSPAN4-220ENST00000532375 TDRD9Q8NDG6 1382 aaKnown RBP24.3■■□□□ 1.48
TSPAN4-220ENST00000532375 WDR97A6NE52 1622 aa24.3■■□□□ 1.48
TSPAN4-220ENST00000532375 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
TSPAN4-220ENST00000532375 ABCA5Q8WWZ7 1642 aa24.15■■□□□ 1.46
TSPAN4-220ENST00000532375 GAPVD1Q14C86 1478 aa24.14■■□□□ 1.46
TSPAN4-220ENST00000532375 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
TSPAN4-220ENST00000532375 OSCARQ8IYS5 282 aa24.12■■□□□ 1.45
TSPAN4-220ENST00000532375 SNAPC4Q5SXM2 1469 aa24.08■■□□□ 1.45
TSPAN4-220ENST00000532375 PBRM1Q86U86 1689 aa24.08■■□□□ 1.44
TSPAN4-220ENST00000532375 MAGI1Q96QZ7 1491 aaPredicted RBP24.06■■□□□ 1.44
TSPAN4-220ENST00000532375 CHD1O14646 1710 aa24.05■■□□□ 1.44
TSPAN4-220ENST00000532375 SYNJ2O15056 1496 aa23.97■■□□□ 1.43
TSPAN4-220ENST00000532375 FBLN2P98095 1184 aa23.96■■□□□ 1.43
TSPAN4-220ENST00000532375 ERICH3Q5RHP9 1530 aa23.94■■□□□ 1.42
TSPAN4-220ENST00000532375 CHMP7Q8WUX9 453 aaPredicted RBP23.93■■□□□ 1.42
TSPAN4-220ENST00000532375 ADAMTS12P58397 1594 aa23.9■■□□□ 1.42
TSPAN4-220ENST00000532375 KIF27Q86VH2 1401 aa23.87■■□□□ 1.41
TSPAN4-220ENST00000532375 IGF1RP08069 1367 aa23.87■■□□□ 1.41
TSPAN4-220ENST00000532375 FHAD1B1AJZ9 1412 aa23.86■■□□□ 1.41
TSPAN4-220ENST00000532375 GRIN2AQ12879 1464 aa23.83■■□□□ 1.41
TSPAN4-220ENST00000532375 TRIM41Q8WV44 630 aa23.82■■□□□ 1.4
TSPAN4-220ENST00000532375 CLASP1Q7Z460 1538 aa23.82■■□□□ 1.4
TSPAN4-220ENST00000532375 RUSC2Q8N2Y8 1516 aa23.78■■□□□ 1.4
TSPAN4-220ENST00000532375 NUP160Q12769 1436 aa23.76■■□□□ 1.39
TSPAN4-220ENST00000532375 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
TSPAN4-220ENST00000532375 RIMBP3CA6NJZ7 1639 aa23.73■■□□□ 1.39
TSPAN4-220ENST00000532375 RIMBP3BA6NNM3 1639 aa23.73■■□□□ 1.39
TSPAN4-220ENST00000532375 RIMBP3Q9UFD9 1639 aa23.73■■□□□ 1.39
TSPAN4-220ENST00000532375 CEP170Q5SW79 1584 aa23.73■■□□□ 1.39
TSPAN4-220ENST00000532375 CUL7Q14999 1698 aa23.7■■□□□ 1.38
TSPAN4-220ENST00000532375 CARMIL1Q5VZK9 1371 aa23.67■■□□□ 1.38
TSPAN4-220ENST00000532375 CHIC1Q5VXU3 224 aa23.65■■□□□ 1.38
TSPAN4-220ENST00000532375 SHROOM2Q13796 1616 aa23.58■■□□□ 1.36
TSPAN4-220ENST00000532375 ARAP1Q96P48 1450 aa23.56■■□□□ 1.36
TSPAN4-220ENST00000532375 ERCC6L2Q5T890 1561 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms