RNA–Protein interactions for RNA: ENST00000531542.1

AMBRA1-210, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 3

Gene AMBRA1, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-210ENST00000531542 NISCHQ9Y2I1 1504 aa33.3■■■□□ 2.92
AMBRA1-210ENST00000531542 CCDC180Q9P1Z9 1646 aa29.81■■■□□ 2.36
AMBRA1-210ENST00000531542 ABCC9O60706 1549 aa29.64■■■□□ 2.34
AMBRA1-210ENST00000531542 RB1CC1Q8TDY2 1594 aa28.33■■■□□ 2.13
AMBRA1-210ENST00000531542 NACADO15069 1562 aa28.21■■■□□ 2.11
AMBRA1-210ENST00000531542 MYO15BQ96JP2 1530 aa27.96■■■□□ 2.07
AMBRA1-210ENST00000531542 DCAF8L2P0C7V8 631 aa27.95■■■□□ 2.06
AMBRA1-210ENST00000531542 DNAJC5BQ9UF47 199 aa27.77■■■□□ 2.04
AMBRA1-210ENST00000531542 PABPN1Q86U42 306 aaKnown RBP eCLIP27.63■■■□□ 2.01
AMBRA1-210ENST00000531542 ZCCHC6Q5VYS8 1495 aaKnown RBP27.62■■■□□ 2.01
AMBRA1-210ENST00000531542 DCAF1Q9Y4B6 1507 aa27.61■■■□□ 2.01
AMBRA1-210ENST00000531542 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
AMBRA1-210ENST00000531542 BICRAQ9NZM4 1560 aa27.48■■□□□ 1.99
AMBRA1-210ENST00000531542 SHROOM4Q9ULL8 1493 aa27.27■■□□□ 1.96
AMBRA1-210ENST00000531542 SCRIBQ14160 1630 aa27.06■■□□□ 1.92
AMBRA1-210ENST00000531542 EIF4G1Q04637 1599 aaKnown RBP26.8■■□□□ 1.88
AMBRA1-210ENST00000531542 CC2D2AQ9P2K1 1620 aa26.8■■□□□ 1.88
AMBRA1-210ENST00000531542 CECR2Q9BXF3 1484 aa26.75■■□□□ 1.87
AMBRA1-210ENST00000531542 NCAPD3P42695 1498 aa26.09■■□□□ 1.77
AMBRA1-210ENST00000531542 ATAD2BQ9ULI0 1458 aa25.97■■□□□ 1.75
AMBRA1-210ENST00000531542 SMARCA4P51532 1647 aa25.9■■□□□ 1.74
AMBRA1-210ENST00000531542 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
AMBRA1-210ENST00000531542 HMGXB3Q12766 1538 aa25.85■■□□□ 1.73
AMBRA1-210ENST00000531542 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
AMBRA1-210ENST00000531542 PEG3Q9GZU2 1588 aa25.75■■□□□ 1.71
AMBRA1-210ENST00000531542 BAZ1BQ9UIG0 1483 aaKnown RBP25.68■■□□□ 1.7
AMBRA1-210ENST00000531542 CUX2O14529 1486 aa25.62■■□□□ 1.69
AMBRA1-210ENST00000531542 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
AMBRA1-210ENST00000531542 ERCC6Q03468 1493 aa25.6■■□□□ 1.69
AMBRA1-210ENST00000531542 DNAJC5Q9H3Z4 198 aa25.5■■□□□ 1.67
AMBRA1-210ENST00000531542 NESP48681 1621 aa25.49■■□□□ 1.67
AMBRA1-210ENST00000531542 LAMC3Q9Y6N6 1575 aa25.41■■□□□ 1.66
AMBRA1-210ENST00000531542 PDS5BQ9NTI5 1447 aa25.3■■□□□ 1.64
AMBRA1-210ENST00000531542 CADPSQ9ULU8 1353 aa25.28■■□□□ 1.64
AMBRA1-210ENST00000531542 WIZO95785 1651 aa25.24■■□□□ 1.63
AMBRA1-210ENST00000531542 THOC2Q8NI27 1593 aaKnown RBP25.22■■□□□ 1.63
AMBRA1-210ENST00000531542 RSF1Q96T23 1441 aaPredicted RBP25.18■■□□□ 1.62
AMBRA1-210ENST00000531542 KIF21AQ7Z4S6 1674 aa25.1■■□□□ 1.61
AMBRA1-210ENST00000531542 MRC2Q9UBG0 1479 aa25.03■■□□□ 1.6
AMBRA1-210ENST00000531542 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
AMBRA1-210ENST00000531542 CFTRP13569 1480 aa25.01■■□□□ 1.59
AMBRA1-210ENST00000531542 WDR62O43379 1518 aa24.96■■□□□ 1.59
AMBRA1-210ENST00000531542 CEP164Q9UPV0 1460 aa24.94■■□□□ 1.58
AMBRA1-210ENST00000531542 FANCD2Q9BXW9 1451 aa24.93■■□□□ 1.58
AMBRA1-210ENST00000531542 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
AMBRA1-210ENST00000531542 URB2Q14146 1524 aaKnown RBP24.7■■□□□ 1.54
AMBRA1-210ENST00000531542 PRDM2Q13029 1718 aa24.61■■□□□ 1.53
AMBRA1-210ENST00000531542 ABCC8Q09428 1581 aa24.5■■□□□ 1.51
AMBRA1-210ENST00000531542 IFT140Q96RY7 1462 aa24.47■■□□□ 1.51
AMBRA1-210ENST00000531542 OSCARQ8IYS5 282 aa24.47■■□□□ 1.51
AMBRA1-210ENST00000531542 TOPBP1Q92547 1522 aa24.45■■□□□ 1.51
AMBRA1-210ENST00000531542 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
AMBRA1-210ENST00000531542 ZNF608Q9ULD9 1512 aaPredicted RBP24.35■■□□□ 1.49
AMBRA1-210ENST00000531542 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
AMBRA1-210ENST00000531542 TARBP1Q13395 1621 aaKnown RBP24.22■■□□□ 1.47
AMBRA1-210ENST00000531542 POLA1P09884 1462 aaPredicted RBP24.22■■□□□ 1.47
AMBRA1-210ENST00000531542 EIF4G3O43432 1585 aaKnown RBP24.2■■□□□ 1.46
AMBRA1-210ENST00000531542 AQRO60306 1485 aaKnown RBP eCLIP24.17■■□□□ 1.468e-7■■■■□ 19.7
AMBRA1-210ENST00000531542 SOGA1O94964 1423 aa24.14■■□□□ 1.45
AMBRA1-210ENST00000531542 RAD54L2Q9Y4B4 1467 aa24.09■■□□□ 1.45
AMBRA1-210ENST00000531542 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
AMBRA1-210ENST00000531542 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
AMBRA1-210ENST00000531542 CUX1P39880 1505 aa24.05■■□□□ 1.44
AMBRA1-210ENST00000531542 TDRD9Q8NDG6 1382 aaKnown RBP24.03■■□□□ 1.44
AMBRA1-210ENST00000531542 SUPT5HO00267 1087 aaKnown RBP24.03■■□□□ 1.44
AMBRA1-210ENST00000531542 RIMBP3CA6NJZ7 1639 aa24.02■■□□□ 1.44
AMBRA1-210ENST00000531542 RIMBP3BA6NNM3 1639 aa24.02■■□□□ 1.44
AMBRA1-210ENST00000531542 RIMBP3Q9UFD9 1639 aa24.02■■□□□ 1.44
AMBRA1-210ENST00000531542 ARHGEF11O15085 1522 aa24■■□□□ 1.43
AMBRA1-210ENST00000531542 FBLN2P98095 1184 aa23.94■■□□□ 1.42
AMBRA1-210ENST00000531542 CHD1O14646 1710 aa23.93■■□□□ 1.42
AMBRA1-210ENST00000531542 MAGI1Q96QZ7 1491 aaPredicted RBP23.93■■□□□ 1.42
AMBRA1-210ENST00000531542 GRIN2BQ13224 1484 aa23.92■■□□□ 1.42
AMBRA1-210ENST00000531542 SNAPC4Q5SXM2 1469 aa23.9■■□□□ 1.42
AMBRA1-210ENST00000531542 CHMP7Q8WUX9 453 aaPredicted RBP23.86■■□□□ 1.41
AMBRA1-210ENST00000531542 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
AMBRA1-210ENST00000531542 SYNJ2O15056 1496 aa23.83■■□□□ 1.41
AMBRA1-210ENST00000531542 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
AMBRA1-210ENST00000531542 CYB5RLQ6IPT4 315 aa23.82■■□□□ 1.4
AMBRA1-210ENST00000531542 CLASP1Q7Z460 1538 aa23.79■■□□□ 1.4
AMBRA1-210ENST00000531542 WRNQ14191 1432 aaPredicted RBP eCLIP23.79■■□□□ 1.4
AMBRA1-210ENST00000531542 SYNJ1O43426 1573 aa23.78■■□□□ 1.4
AMBRA1-210ENST00000531542 ARAP1Q96P48 1450 aa23.77■■□□□ 1.4
AMBRA1-210ENST00000531542 ABCA5Q8WWZ7 1642 aa23.75■■□□□ 1.39
AMBRA1-210ENST00000531542 TOP2BQ02880 1626 aa23.72■■□□□ 1.39
AMBRA1-210ENST00000531542 PBRM1Q86U86 1689 aa23.7■■□□□ 1.38
AMBRA1-210ENST00000531542 BIVM-ERCC5R4GMW8 1640 aa23.69■■□□□ 1.38
AMBRA1-210ENST00000531542 GRIN2AQ12879 1464 aa23.6■■□□□ 1.37
AMBRA1-210ENST00000531542 FHAD1B1AJZ9 1412 aa23.57■■□□□ 1.36
AMBRA1-210ENST00000531542 ERICH3Q5RHP9 1530 aa23.56■■□□□ 1.36
AMBRA1-210ENST00000531542 NUP160Q12769 1436 aa23.55■■□□□ 1.36
AMBRA1-210ENST00000531542 ADAMTS12P58397 1594 aa23.55■■□□□ 1.36
AMBRA1-210ENST00000531542 TRHP20396 242 aaPredicted RBP23.48■■□□□ 1.35
AMBRA1-210ENST00000531542 CEP170Q5SW79 1584 aa23.46■■□□□ 1.35
AMBRA1-210ENST00000531542 SHROOM2Q13796 1616 aa23.39■■□□□ 1.33
AMBRA1-210ENST00000531542 ERCC6L2Q5T890 1561 aa23.35■■□□□ 1.33
AMBRA1-210ENST00000531542 JPH4Q96JJ6 628 aa23.31■■□□□ 1.32
AMBRA1-210ENST00000531542 IGF1RP08069 1367 aa23.3■■□□□ 1.32
AMBRA1-210ENST00000531542 KIF27Q86VH2 1401 aa23.3■■□□□ 1.32
AMBRA1-210ENST00000531542 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms