RNA–Protein interactions for RNA: ENST00000531504.5

HIPK3-205, Transcript of homeodomain interacting protein kinase 3, humanhuman

TSL 2

Gene HIPK3, Length 591 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3-205ENST00000531504 NISCHQ9Y2I1 1504 aa50.57■■■■■ 5.69
HIPK3-205ENST00000531504 ABCC9O60706 1549 aa46.28■■■■■ 5
HIPK3-205ENST00000531504 CCDC180Q9P1Z9 1646 aa45.77■■■■■ 4.92
HIPK3-205ENST00000531504 RB1CC1Q8TDY2 1594 aa43.86■■■■■ 4.61
HIPK3-205ENST00000531504 DNAJC5BQ9UF47 199 aa43.86■■■■■ 4.61
HIPK3-205ENST00000531504 NACADO15069 1562 aa43.4■■■■■ 4.54
HIPK3-205ENST00000531504 PABPN1Q86U42 306 aaKnown RBP eCLIP42.91■■■■■ 4.46
HIPK3-205ENST00000531504 DCAF8L2P0C7V8 631 aa42.9■■■■■ 4.46
HIPK3-205ENST00000531504 UNC13AQ9UPW8 1703 aa42.84■■■■■ 4.45
HIPK3-205ENST00000531504 MYO15BQ96JP2 1530 aa42.58■■■■■ 4.41
HIPK3-205ENST00000531504 BICRAQ9NZM4 1560 aa42.52■■■■■ 4.4
HIPK3-205ENST00000531504 SHROOM4Q9ULL8 1493 aa42.02■■■■■ 4.32
HIPK3-205ENST00000531504 CC2D2AQ9P2K1 1620 aa41.82■■■■■ 4.29
HIPK3-205ENST00000531504 DCAF1Q9Y4B6 1507 aa41.79■■■■■ 4.28
HIPK3-205ENST00000531504 ZCCHC6Q5VYS8 1495 aaKnown RBP41.79■■■■■ 4.28
HIPK3-205ENST00000531504 CECR2Q9BXF3 1484 aa41.79■■■■■ 4.28
HIPK3-205ENST00000531504 SCRIBQ14160 1630 aa41.58■■■■■ 4.25
HIPK3-205ENST00000531504 EIF4G1Q04637 1599 aaKnown RBP41.58■■■■■ 4.25
HIPK3-205ENST00000531504 DNAJC5Q9H3Z4 198 aa40.86■■■■■ 4.13
HIPK3-205ENST00000531504 CUX2O14529 1486 aa40.24■■■■■ 4.03
HIPK3-205ENST00000531504 ERCC6Q03468 1493 aa40.08■■■■■ 4.01
HIPK3-205ENST00000531504 NCAPD3P42695 1498 aa40.01■■■■■ 4
HIPK3-205ENST00000531504 ATAD2BQ9ULI0 1458 aa39.79■■■■□ 3.96
HIPK3-205ENST00000531504 SMARCA2P51531 1590 aa39.72■■■■□ 3.95
HIPK3-205ENST00000531504 HMGXB3Q12766 1538 aa39.71■■■■□ 3.95
HIPK3-205ENST00000531504 SMARCA4P51532 1647 aa39.62■■■■□ 3.93
HIPK3-205ENST00000531504 NESP48681 1621 aa39.54■■■■□ 3.92
HIPK3-205ENST00000531504 BAZ1BQ9UIG0 1483 aaKnown RBP39.41■■■■□ 3.9
HIPK3-205ENST00000531504 THOC2Q8NI27 1593 aaKnown RBP39.36■■■■□ 3.89
HIPK3-205ENST00000531504 BAZ1AQ9NRL2 1556 aaPredicted RBP39.35■■■■□ 3.89
HIPK3-205ENST00000531504 LAMC3Q9Y6N6 1575 aa39.28■■■■□ 3.88
HIPK3-205ENST00000531504 PEG3Q9GZU2 1588 aa39.25■■■■□ 3.87
HIPK3-205ENST00000531504 KIF21AQ7Z4S6 1674 aa39.09■■■■□ 3.85
HIPK3-205ENST00000531504 PDS5BQ9NTI5 1447 aa39.06■■■■□ 3.84
HIPK3-205ENST00000531504 MROH2BQ7Z745 1585 aa38.92■■■■□ 3.82
HIPK3-205ENST00000531504 TRIM41Q8WV44 630 aa38.8■■■■□ 3.8
HIPK3-205ENST00000531504 MRC2Q9UBG0 1479 aa38.75■■■■□ 3.79
HIPK3-205ENST00000531504 CADPSQ9ULU8 1353 aa38.75■■■■□ 3.79
HIPK3-205ENST00000531504 WDR62O43379 1518 aa38.68■■■■□ 3.78
HIPK3-205ENST00000531504 CEP164Q9UPV0 1460 aa38.48■■■■□ 3.75
HIPK3-205ENST00000531504 WIZO95785 1651 aa38.45■■■■□ 3.75
HIPK3-205ENST00000531504 FANCD2Q9BXW9 1451 aa38.34■■■■□ 3.73
HIPK3-205ENST00000531504 OSCARQ8IYS5 282 aa38.23■■■■□ 3.71
HIPK3-205ENST00000531504 CFTRP13569 1480 aa38.19■■■■□ 3.7
HIPK3-205ENST00000531504 URB2Q14146 1524 aaKnown RBP38.03■■■■□ 3.68
HIPK3-205ENST00000531504 TOP2AP11388 1531 aaKnown RBP37.97■■■■□ 3.67
HIPK3-205ENST00000531504 RSF1Q96T23 1441 aaPredicted RBP37.87■■■■□ 3.65
HIPK3-205ENST00000531504 PRDM2Q13029 1718 aa37.87■■■■□ 3.65
HIPK3-205ENST00000531504 RIMBP3CA6NJZ7 1639 aa37.83■■■■□ 3.65
HIPK3-205ENST00000531504 RIMBP3BA6NNM3 1639 aa37.83■■■■□ 3.65
HIPK3-205ENST00000531504 RIMBP3Q9UFD9 1639 aa37.83■■■■□ 3.65
HIPK3-205ENST00000531504 IFT140Q96RY7 1462 aa37.72■■■■□ 3.63
HIPK3-205ENST00000531504 ARHGEF11O15085 1522 aa37.65■■■■□ 3.62
HIPK3-205ENST00000531504 ZNF608Q9ULD9 1512 aaPredicted RBP37.65■■■■□ 3.62
HIPK3-205ENST00000531504 TOPBP1Q92547 1522 aa37.53■■■■□ 3.6
HIPK3-205ENST00000531504 EIF4G3O43432 1585 aaKnown RBP37.5■■■■□ 3.59
HIPK3-205ENST00000531504 ABCC8Q09428 1581 aa37.48■■■■□ 3.59
HIPK3-205ENST00000531504 CCDC88BA6NC98 1476 aa37.47■■■■□ 3.59
HIPK3-205ENST00000531504 DNMBPQ6XZF7 1577 aa37.38■■■■□ 3.57
HIPK3-205ENST00000531504 CYB5RLQ6IPT4 315 aa37.35■■■■□ 3.57
HIPK3-205ENST00000531504 CHD1O14646 1710 aa37.35■■■■□ 3.57
HIPK3-205ENST00000531504 TARBP1Q13395 1621 aaKnown RBP37.26■■■■□ 3.56
HIPK3-205ENST00000531504 AQRO60306 1485 aaKnown RBP eCLIP37.22■■■■□ 3.55
HIPK3-205ENST00000531504 ARAP1Q96P48 1450 aa37.2■■■■□ 3.55
HIPK3-205ENST00000531504 TRHP20396 242 aaPredicted RBP37.17■■■■□ 3.54
HIPK3-205ENST00000531504 FBLN2P98095 1184 aa37.13■■■■□ 3.53
HIPK3-205ENST00000531504 POLA1P09884 1462 aaPredicted RBP37.1■■■■□ 3.53
HIPK3-205ENST00000531504 WDR97A6NE52 1622 aa36.93■■■■□ 3.5
HIPK3-205ENST00000531504 RAD54L2Q9Y4B4 1467 aa36.93■■■■□ 3.5
HIPK3-205ENST00000531504 SOGA1O94964 1423 aa36.91■■■■□ 3.5
HIPK3-205ENST00000531504 TDRD9Q8NDG6 1382 aaKnown RBP36.89■■■■□ 3.5
HIPK3-205ENST00000531504 CLASP1Q7Z460 1538 aa36.88■■■■□ 3.49
HIPK3-205ENST00000531504 SNAPC4Q5SXM2 1469 aa36.88■■■■□ 3.49
HIPK3-205ENST00000531504 SYNJ1O43426 1573 aa36.85■■■■□ 3.49
HIPK3-205ENST00000531504 MAGI1Q96QZ7 1491 aaPredicted RBP36.8■■■■□ 3.48
HIPK3-205ENST00000531504 FGD5Q6ZNL6 1462 aa36.78■■■■□ 3.48
HIPK3-205ENST00000531504 CHMP7Q8WUX9 453 aaPredicted RBP36.77■■■■□ 3.48
HIPK3-205ENST00000531504 GRIN2BQ13224 1484 aa36.7■■■■□ 3.47
HIPK3-205ENST00000531504 SYNJ2O15056 1496 aa36.67■■■■□ 3.46
HIPK3-205ENST00000531504 CUX1P39880 1505 aa36.63■■■■□ 3.45
HIPK3-205ENST00000531504 AEBP2Q6ZN18 517 aaPredicted RBP36.62■■■■□ 3.45
HIPK3-205ENST00000531504 PBRM1Q86U86 1689 aa36.56■■■■□ 3.44
HIPK3-205ENST00000531504 GAPVD1Q14C86 1478 aa36.52■■■■□ 3.44
HIPK3-205ENST00000531504 ABCA5Q8WWZ7 1642 aa36.37■■■■□ 3.41
HIPK3-205ENST00000531504 ABCA10Q8WWZ4 1543 aa36.34■■■■□ 3.41
HIPK3-205ENST00000531504 GRIN2AQ12879 1464 aa36.23■■■■□ 3.39
HIPK3-205ENST00000531504 ERCC6L2Q5T890 1561 aa36.19■■■■□ 3.38
HIPK3-205ENST00000531504 ADAMTS12P58397 1594 aa36.15■■■■□ 3.38
HIPK3-205ENST00000531504 CEP170Q5SW79 1584 aa36.15■■■■□ 3.38
HIPK3-205ENST00000531504 NUP160Q12769 1436 aa36.12■■■■□ 3.37
HIPK3-205ENST00000531504 WRNQ14191 1432 aaPredicted RBP eCLIP36.08■■■■□ 3.37
HIPK3-205ENST00000531504 SHROOM2Q13796 1616 aa36.06■■■■□ 3.36
HIPK3-205ENST00000531504 FHAD1B1AJZ9 1412 aa36■■■■□ 3.35
HIPK3-205ENST00000531504 KIF13AQ9H1H9 1805 aa35.94■■■■□ 3.34
HIPK3-205ENST00000531504 BIVM-ERCC5R4GMW8 1640 aa35.94■■■■□ 3.34
HIPK3-205ENST00000531504 TOP2BQ02880 1626 aa35.91■■■■□ 3.34
HIPK3-205ENST00000531504 ERICH3Q5RHP9 1530 aa35.91■■■■□ 3.34
HIPK3-205ENST00000531504 PRG4Q92954 1404 aaPredicted RBP35.81■■■■□ 3.32
HIPK3-205ENST00000531504 JPH4Q96JJ6 628 aa35.7■■■■□ 3.31
HIPK3-205ENST00000531504 SUPT5HO00267 1087 aaKnown RBP35.67■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms