RNA–Protein interactions for RNA: ENST00000531406.1

TM9SF1-211, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 2

Gene TM9SF1, Length 1,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-211ENST00000531406 NISCHQ9Y2I1 1504 aa32.05■■■□□ 2.72
TM9SF1-211ENST00000531406 ABCC9O60706 1549 aa28.74■■■□□ 2.19
TM9SF1-211ENST00000531406 CCDC180Q9P1Z9 1646 aa28.66■■■□□ 2.18
TM9SF1-211ENST00000531406 RB1CC1Q8TDY2 1594 aa27.33■■□□□ 1.97
TM9SF1-211ENST00000531406 NACADO15069 1562 aa27.15■■□□□ 1.94
TM9SF1-211ENST00000531406 DCAF8L2P0C7V8 631 aa27.1■■□□□ 1.93
TM9SF1-211ENST00000531406 DNAJC5BQ9UF47 199 aa27.01■■□□□ 1.91
TM9SF1-211ENST00000531406 PABPN1Q86U42 306 aaKnown RBP eCLIP26.81■■□□□ 1.88
TM9SF1-211ENST00000531406 MYO15BQ96JP2 1530 aa26.8■■□□□ 1.88
TM9SF1-211ENST00000531406 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
TM9SF1-211ENST00000531406 ZCCHC6Q5VYS8 1495 aaKnown RBP26.55■■□□□ 1.84
TM9SF1-211ENST00000531406 BICRAQ9NZM4 1560 aa26.54■■□□□ 1.84
TM9SF1-211ENST00000531406 DCAF1Q9Y4B6 1507 aa26.46■■□□□ 1.83
TM9SF1-211ENST00000531406 SHROOM4Q9ULL8 1493 aa26.2■■□□□ 1.78
TM9SF1-211ENST00000531406 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
TM9SF1-211ENST00000531406 CC2D2AQ9P2K1 1620 aa25.92■■□□□ 1.74
TM9SF1-211ENST00000531406 CECR2Q9BXF3 1484 aa25.9■■□□□ 1.74
TM9SF1-211ENST00000531406 EIF4G1Q04637 1599 aaKnown RBP25.88■■□□□ 1.73
TM9SF1-211ENST00000531406 NCAPD3P42695 1498 aa25.11■■□□□ 1.61
TM9SF1-211ENST00000531406 ATAD2BQ9ULI0 1458 aa25.03■■□□□ 1.6
TM9SF1-211ENST00000531406 SMARCA4P51532 1647 aa24.95■■□□□ 1.58
TM9SF1-211ENST00000531406 SMARCA2P51531 1590 aa24.93■■□□□ 1.58
TM9SF1-211ENST00000531406 HMGXB3Q12766 1538 aa24.87■■□□□ 1.57
TM9SF1-211ENST00000531406 BAZ1AQ9NRL2 1556 aaPredicted RBP24.85■■□□□ 1.57
TM9SF1-211ENST00000531406 ERCC6Q03468 1493 aa24.81■■□□□ 1.56
TM9SF1-211ENST00000531406 DNAJC5Q9H3Z4 198 aa24.79■■□□□ 1.56
TM9SF1-211ENST00000531406 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
TM9SF1-211ENST00000531406 CUX2O14529 1486 aa24.76■■□□□ 1.55
TM9SF1-211ENST00000531406 PEG3Q9GZU2 1588 aa24.72■■□□□ 1.55
TM9SF1-211ENST00000531406 MROH2BQ7Z745 1585 aa24.7■■□□□ 1.54
TM9SF1-211ENST00000531406 NESP48681 1621 aa24.69■■□□□ 1.54
TM9SF1-211ENST00000531406 LAMC3Q9Y6N6 1575 aa24.49■■□□□ 1.51
TM9SF1-211ENST00000531406 PDS5BQ9NTI5 1447 aa24.4■■□□□ 1.5
TM9SF1-211ENST00000531406 THOC2Q8NI27 1593 aaKnown RBP24.38■■□□□ 1.49
TM9SF1-211ENST00000531406 CADPSQ9ULU8 1353 aa24.37■■□□□ 1.49
TM9SF1-211ENST00000531406 WIZO95785 1651 aa24.34■■□□□ 1.49
TM9SF1-211ENST00000531406 KIF21AQ7Z4S6 1674 aa24.27■■□□□ 1.48
TM9SF1-211ENST00000531406 RSF1Q96T23 1441 aaPredicted RBP24.22■■□□□ 1.47
TM9SF1-211ENST00000531406 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
TM9SF1-211ENST00000531406 WDR62O43379 1518 aa24.09■■□□□ 1.45
TM9SF1-211ENST00000531406 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.45
TM9SF1-211ENST00000531406 CFTRP13569 1480 aa24.07■■□□□ 1.44
TM9SF1-211ENST00000531406 CEP164Q9UPV0 1460 aa24.07■■□□□ 1.44
TM9SF1-211ENST00000531406 FANCD2Q9BXW9 1451 aa24.06■■□□□ 1.44
TM9SF1-211ENST00000531406 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
TM9SF1-211ENST00000531406 CCDC88BA6NC98 1476 aa23.84■■□□□ 1.41
TM9SF1-211ENST00000531406 OSCARQ8IYS5 282 aa23.69■■□□□ 1.38
TM9SF1-211ENST00000531406 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
TM9SF1-211ENST00000531406 PRDM2Q13029 1718 aa23.64■■□□□ 1.38
TM9SF1-211ENST00000531406 IFT140Q96RY7 1462 aa23.61■■□□□ 1.37
TM9SF1-211ENST00000531406 TOPBP1Q92547 1522 aa23.59■■□□□ 1.37
TM9SF1-211ENST00000531406 ZNF608Q9ULD9 1512 aaPredicted RBP23.57■■□□□ 1.36
TM9SF1-211ENST00000531406 ABCC8Q09428 1581 aa23.55■■□□□ 1.36
TM9SF1-211ENST00000531406 DNMBPQ6XZF7 1577 aa23.48■■□□□ 1.35
TM9SF1-211ENST00000531406 EIF4G3O43432 1585 aaKnown RBP23.38■■□□□ 1.33
TM9SF1-211ENST00000531406 AQRO60306 1485 aaKnown RBP eCLIP23.37■■□□□ 1.33
TM9SF1-211ENST00000531406 POLA1P09884 1462 aaPredicted RBP23.36■■□□□ 1.33
TM9SF1-211ENST00000531406 TARBP1Q13395 1621 aaKnown RBP23.36■■□□□ 1.33
TM9SF1-211ENST00000531406 SOGA1O94964 1423 aa23.29■■□□□ 1.32
TM9SF1-211ENST00000531406 RAD54L2Q9Y4B4 1467 aa23.29■■□□□ 1.32
TM9SF1-211ENST00000531406 RIMBP3CA6NJZ7 1639 aa23.28■■□□□ 1.32
TM9SF1-211ENST00000531406 RIMBP3BA6NNM3 1639 aa23.28■■□□□ 1.32
TM9SF1-211ENST00000531406 RIMBP3Q9UFD9 1639 aa23.28■■□□□ 1.32
TM9SF1-211ENST00000531406 TDRD9Q8NDG6 1382 aaKnown RBP23.26■■□□□ 1.31
TM9SF1-211ENST00000531406 ARHGEF11O15085 1522 aa23.24■■□□□ 1.31
TM9SF1-211ENST00000531406 FBLN2P98095 1184 aa23.24■■□□□ 1.31
TM9SF1-211ENST00000531406 FGD5Q6ZNL6 1462 aa23.21■■□□□ 1.31
TM9SF1-211ENST00000531406 CUX1P39880 1505 aa23.19■■□□□ 1.3
TM9SF1-211ENST00000531406 SUPT5HO00267 1087 aaKnown RBP23.19■■□□□ 1.3
TM9SF1-211ENST00000531406 CHD1O14646 1710 aa23.14■■□□□ 1.3
TM9SF1-211ENST00000531406 CYB5RLQ6IPT4 315 aa23.13■■□□□ 1.29
TM9SF1-211ENST00000531406 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
TM9SF1-211ENST00000531406 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
TM9SF1-211ENST00000531406 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
TM9SF1-211ENST00000531406 CHMP7Q8WUX9 453 aaPredicted RBP23.07■■□□□ 1.28
TM9SF1-211ENST00000531406 MAGI1Q96QZ7 1491 aaPredicted RBP23.05■■□□□ 1.28
TM9SF1-211ENST00000531406 ARAP1Q96P48 1450 aa23.03■■□□□ 1.28
TM9SF1-211ENST00000531406 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
TM9SF1-211ENST00000531406 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
TM9SF1-211ENST00000531406 CLASP1Q7Z460 1538 aa22.97■■□□□ 1.27
TM9SF1-211ENST00000531406 ABCA10Q8WWZ4 1543 aa22.96■■□□□ 1.27
TM9SF1-211ENST00000531406 SYNJ1O43426 1573 aa22.94■■□□□ 1.26
TM9SF1-211ENST00000531406 WRNQ14191 1432 aaPredicted RBP eCLIP22.89■■□□□ 1.25
TM9SF1-211ENST00000531406 ABCA5Q8WWZ7 1642 aa22.88■■□□□ 1.25
TM9SF1-211ENST00000531406 TRHP20396 242 aaPredicted RBP22.86■■□□□ 1.25
TM9SF1-211ENST00000531406 PBRM1Q86U86 1689 aa22.85■■□□□ 1.25
TM9SF1-211ENST00000531406 TOP2BQ02880 1626 aa22.8■■□□□ 1.24
TM9SF1-211ENST00000531406 BIVM-ERCC5R4GMW8 1640 aa22.77■■□□□ 1.24
TM9SF1-211ENST00000531406 GRIN2AQ12879 1464 aa22.75■■□□□ 1.23
TM9SF1-211ENST00000531406 FHAD1B1AJZ9 1412 aa22.71■■□□□ 1.23
TM9SF1-211ENST00000531406 ADAMTS12P58397 1594 aa22.71■■□□□ 1.23
TM9SF1-211ENST00000531406 NUP160Q12769 1436 aa22.69■■□□□ 1.22
TM9SF1-211ENST00000531406 ERICH3Q5RHP9 1530 aa22.66■■□□□ 1.22
TM9SF1-211ENST00000531406 CEP170Q5SW79 1584 aa22.64■■□□□ 1.22
TM9SF1-211ENST00000531406 ERCC6L2Q5T890 1561 aa22.62■■□□□ 1.21
TM9SF1-211ENST00000531406 SHROOM2Q13796 1616 aa22.53■■□□□ 1.2
TM9SF1-211ENST00000531406 JPH4Q96JJ6 628 aa22.5■■□□□ 1.19
TM9SF1-211ENST00000531406 PRG4Q92954 1404 aaPredicted RBP22.48■■□□□ 1.19
TM9SF1-211ENST00000531406 IGF1RP08069 1367 aa22.44■■□□□ 1.18
TM9SF1-211ENST00000531406 KIF27Q86VH2 1401 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms