RNA–Protein interactions for RNA: ENST00000531341.1

CHKA-206, Transcript of choline kinase alpha, humanhuman

TSL 3

Gene CHKA, Length 524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKA-206ENST00000531341 NISCHQ9Y2I1 1504 aa53.46■■■■■ 6.15
CHKA-206ENST00000531341 ABCC9O60706 1549 aa48.58■■■■■ 5.37
CHKA-206ENST00000531341 CCDC180Q9P1Z9 1646 aa47.99■■■■■ 5.27
CHKA-206ENST00000531341 DNAJC5BQ9UF47 199 aa46.09■■■■■ 4.97
CHKA-206ENST00000531341 RB1CC1Q8TDY2 1594 aa45.93■■■■■ 4.94
CHKA-206ENST00000531341 NACADO15069 1562 aa45.53■■■■■ 4.88
CHKA-206ENST00000531341 DCAF8L2P0C7V8 631 aa45.41■■■■■ 4.86
CHKA-206ENST00000531341 PABPN1Q86U42 306 aaKnown RBP eCLIP45.27■■■■■ 4.84
CHKA-206ENST00000531341 UNC13AQ9UPW8 1703 aa44.93■■■■■ 4.78
CHKA-206ENST00000531341 MYO15BQ96JP2 1530 aa44.75■■■■■ 4.75
CHKA-206ENST00000531341 BICRAQ9NZM4 1560 aa44.73■■■■■ 4.75
CHKA-206ENST00000531341 ZCCHC6Q5VYS8 1495 aaKnown RBP44.21■■■■■ 4.67
CHKA-206ENST00000531341 DCAF1Q9Y4B6 1507 aa44.05■■■■■ 4.64
CHKA-206ENST00000531341 SHROOM4Q9ULL8 1493 aa43.89■■■■■ 4.62
CHKA-206ENST00000531341 SCRIBQ14160 1630 aa43.85■■■■■ 4.61
CHKA-206ENST00000531341 CC2D2AQ9P2K1 1620 aa43.81■■■■■ 4.6
CHKA-206ENST00000531341 CECR2Q9BXF3 1484 aa43.76■■■■■ 4.6
CHKA-206ENST00000531341 EIF4G1Q04637 1599 aaKnown RBP43.62■■■■■ 4.57
CHKA-206ENST00000531341 DNAJC5Q9H3Z4 198 aa42.47■■■■■ 4.39
CHKA-206ENST00000531341 NCAPD3P42695 1498 aa42.11■■■■■ 4.33
CHKA-206ENST00000531341 ATAD2BQ9ULI0 1458 aa41.96■■■■■ 4.31
CHKA-206ENST00000531341 CUX2O14529 1486 aa41.92■■■■■ 4.3
CHKA-206ENST00000531341 ERCC6Q03468 1493 aa41.89■■■■■ 4.3
CHKA-206ENST00000531341 SMARCA4P51532 1647 aa41.76■■■■■ 4.28
CHKA-206ENST00000531341 SMARCA2P51531 1590 aa41.7■■■■■ 4.27
CHKA-206ENST00000531341 HMGXB3Q12766 1538 aa41.69■■■■■ 4.26
CHKA-206ENST00000531341 NESP48681 1621 aa41.66■■■■■ 4.26
CHKA-206ENST00000531341 BAZ1BQ9UIG0 1483 aaKnown RBP41.47■■■■■ 4.23
CHKA-206ENST00000531341 BAZ1AQ9NRL2 1556 aaPredicted RBP41.46■■■■■ 4.23
CHKA-206ENST00000531341 PEG3Q9GZU2 1588 aa41.33■■■■■ 4.21
CHKA-206ENST00000531341 MROH2BQ7Z745 1585 aa41.25■■■■■ 4.19
CHKA-206ENST00000531341 THOC2Q8NI27 1593 aaKnown RBP41.21■■■■■ 4.19
CHKA-206ENST00000531341 LAMC3Q9Y6N6 1575 aa41.15■■■■■ 4.18
CHKA-206ENST00000531341 KIF21AQ7Z4S6 1674 aa41■■■■■ 4.15
CHKA-206ENST00000531341 PDS5BQ9NTI5 1447 aa40.96■■■■■ 4.15
CHKA-206ENST00000531341 CADPSQ9ULU8 1353 aa40.83■■■■■ 4.13
CHKA-206ENST00000531341 WIZO95785 1651 aa40.71■■■■■ 4.11
CHKA-206ENST00000531341 MRC2Q9UBG0 1479 aa40.64■■■■■ 4.1
CHKA-206ENST00000531341 WDR62O43379 1518 aa40.55■■■■■ 4.08
CHKA-206ENST00000531341 TRIM41Q8WV44 630 aa40.49■■■■■ 4.07
CHKA-206ENST00000531341 CEP164Q9UPV0 1460 aa40.39■■■■■ 4.06
CHKA-206ENST00000531341 FANCD2Q9BXW9 1451 aa40.36■■■■■ 4.05
CHKA-206ENST00000531341 CFTRP13569 1480 aa40.26■■■■■ 4.04
CHKA-206ENST00000531341 RSF1Q96T23 1441 aaPredicted RBP40.25■■■■■ 4.03
CHKA-206ENST00000531341 TOP2AP11388 1531 aaKnown RBP40.1■■■■■ 4.01
CHKA-206ENST00000531341 URB2Q14146 1524 aaKnown RBP40.09■■■■■ 4.01
CHKA-206ENST00000531341 OSCARQ8IYS5 282 aa40.02■■■■■ 4
CHKA-206ENST00000531341 CCDC88BA6NC98 1476 aa39.75■■■■□ 3.95
CHKA-206ENST00000531341 ZNF608Q9ULD9 1512 aaPredicted RBP39.69■■■■□ 3.94
CHKA-206ENST00000531341 PRDM2Q13029 1718 aa39.66■■■■□ 3.94
CHKA-206ENST00000531341 IFT140Q96RY7 1462 aa39.6■■■■□ 3.93
CHKA-206ENST00000531341 TOPBP1Q92547 1522 aa39.55■■■■□ 3.92
CHKA-206ENST00000531341 RIMBP3CA6NJZ7 1639 aa39.52■■■■□ 3.92
CHKA-206ENST00000531341 RIMBP3BA6NNM3 1639 aa39.52■■■■□ 3.92
CHKA-206ENST00000531341 RIMBP3Q9UFD9 1639 aa39.52■■■■□ 3.92
CHKA-206ENST00000531341 ARHGEF11O15085 1522 aa39.36■■■■□ 3.89
CHKA-206ENST00000531341 EIF4G3O43432 1585 aaKnown RBP39.34■■■■□ 3.89
CHKA-206ENST00000531341 ABCC8Q09428 1581 aa39.33■■■■□ 3.89
CHKA-206ENST00000531341 DNMBPQ6XZF7 1577 aa39.31■■■■□ 3.88
CHKA-206ENST00000531341 AQRO60306 1485 aaKnown RBP eCLIP39.29■■■■□ 3.885e-7■■■■□ 20
CHKA-206ENST00000531341 TARBP1Q13395 1621 aaKnown RBP39.22■■■■□ 3.87
CHKA-206ENST00000531341 CYB5RLQ6IPT4 315 aa39.18■■■■□ 3.86
CHKA-206ENST00000531341 POLA1P09884 1462 aaPredicted RBP39.13■■■■□ 3.85
CHKA-206ENST00000531341 CHD1O14646 1710 aa39.11■■■■□ 3.85
CHKA-206ENST00000531341 FBLN2P98095 1184 aa39.09■■■■□ 3.85
CHKA-206ENST00000531341 RAD54L2Q9Y4B4 1467 aa39.06■■■■□ 3.84
CHKA-206ENST00000531341 ARAP1Q96P48 1450 aa38.98■■■■□ 3.83
CHKA-206ENST00000531341 TDRD9Q8NDG6 1382 aaKnown RBP38.98■■■■□ 3.83
CHKA-206ENST00000531341 SOGA1O94964 1423 aa38.96■■■■□ 3.83
CHKA-206ENST00000531341 TRHP20396 242 aaPredicted RBP38.84■■■■□ 3.81
CHKA-206ENST00000531341 FGD5Q6ZNL6 1462 aa38.83■■■■□ 3.81
CHKA-206ENST00000531341 SNAPC4Q5SXM2 1469 aa38.81■■■■□ 3.8
CHKA-206ENST00000531341 CUX1P39880 1505 aa38.75■■■■□ 3.79
CHKA-206ENST00000531341 CHMP7Q8WUX9 453 aaPredicted RBP38.7■■■■□ 3.79
CHKA-206ENST00000531341 CLASP1Q7Z460 1538 aa38.69■■■■□ 3.78
CHKA-206ENST00000531341 WDR97A6NE52 1622 aa38.65■■■■□ 3.78
CHKA-206ENST00000531341 GRIN2BQ13224 1484 aa38.61■■■■□ 3.77
CHKA-206ENST00000531341 MAGI1Q96QZ7 1491 aaPredicted RBP38.61■■■■□ 3.77
CHKA-206ENST00000531341 SYNJ1O43426 1573 aa38.57■■■■□ 3.76
CHKA-206ENST00000531341 SYNJ2O15056 1496 aa38.53■■■■□ 3.76
CHKA-206ENST00000531341 GAPVD1Q14C86 1478 aa38.45■■■■□ 3.75
CHKA-206ENST00000531341 PBRM1Q86U86 1689 aa38.39■■■■□ 3.74
CHKA-206ENST00000531341 ABCA10Q8WWZ4 1543 aa38.33■■■■□ 3.73
CHKA-206ENST00000531341 ABCA5Q8WWZ7 1642 aa38.3■■■■□ 3.72
CHKA-206ENST00000531341 SUPT5HO00267 1087 aaKnown RBP38.24■■■■□ 3.71
CHKA-206ENST00000531341 ERCC6L2Q5T890 1561 aa38.16■■■■□ 3.7
CHKA-206ENST00000531341 GRIN2AQ12879 1464 aa38.14■■■■□ 3.7
CHKA-206ENST00000531341 WRNQ14191 1432 aaPredicted RBP eCLIP38.1■■■■□ 3.69
CHKA-206ENST00000531341 CEP170Q5SW79 1584 aa38.04■■■■□ 3.68
CHKA-206ENST00000531341 ADAMTS12P58397 1594 aa38.03■■■■□ 3.68
CHKA-206ENST00000531341 NUP160Q12769 1436 aa38.03■■■■□ 3.68
CHKA-206ENST00000531341 TOP2BQ02880 1626 aa37.96■■■■□ 3.67
CHKA-206ENST00000531341 BIVM-ERCC5R4GMW8 1640 aa37.94■■■■□ 3.66
CHKA-206ENST00000531341 AEBP2Q6ZN18 517 aaPredicted RBP37.94■■■■□ 3.66
CHKA-206ENST00000531341 FHAD1B1AJZ9 1412 aa37.93■■■■□ 3.66
CHKA-206ENST00000531341 SHROOM2Q13796 1616 aa37.86■■■■□ 3.65
CHKA-206ENST00000531341 ERICH3Q5RHP9 1530 aa37.81■■■■□ 3.64
CHKA-206ENST00000531341 PRG4Q92954 1404 aaPredicted RBP37.72■■■■□ 3.63
CHKA-206ENST00000531341 JPH4Q96JJ6 628 aa37.69■■■■□ 3.62
CHKA-206ENST00000531341 KIF13AQ9H1H9 1805 aa37.57■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms