RNA–Protein interactions for RNA: ENST00000531257.1

FOXRED1-211, Transcript of FAD dependent oxidoreductase domain containing 1, humanhuman

TSL 3

Gene FOXRED1, Length 800 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXRED1-211ENST00000531257 NISCHQ9Y2I1 1504 aa28.46■■■□□ 2.15
FOXRED1-211ENST00000531257 CCDC180Q9P1Z9 1646 aa25.58■■□□□ 1.69
FOXRED1-211ENST00000531257 ABCC9O60706 1549 aa25.48■■□□□ 1.67
FOXRED1-211ENST00000531257 RB1CC1Q8TDY2 1594 aa24.29■■□□□ 1.48
FOXRED1-211ENST00000531257 NACADO15069 1562 aa24.11■■□□□ 1.45
FOXRED1-211ENST00000531257 DCAF8L2P0C7V8 631 aa24.07■■□□□ 1.44
FOXRED1-211ENST00000531257 UNC13AQ9UPW8 1703 aa23.87■■□□□ 1.41
FOXRED1-211ENST00000531257 DNAJC5BQ9UF47 199 aa23.75■■□□□ 1.39
FOXRED1-211ENST00000531257 MYO15BQ96JP2 1530 aa23.73■■□□□ 1.39
FOXRED1-211ENST00000531257 PABPN1Q86U42 306 aaKnown RBP eCLIP23.71■■□□□ 1.39
FOXRED1-211ENST00000531257 ZCCHC6Q5VYS8 1495 aaKnown RBP23.6■■□□□ 1.37
FOXRED1-211ENST00000531257 BICRAQ9NZM4 1560 aa23.56■■□□□ 1.36
FOXRED1-211ENST00000531257 DCAF1Q9Y4B6 1507 aa23.48■■□□□ 1.35
FOXRED1-211ENST00000531257 SCRIBQ14160 1630 aa23.35■■□□□ 1.33
FOXRED1-211ENST00000531257 SHROOM4Q9ULL8 1493 aa23.17■■□□□ 1.3
FOXRED1-211ENST00000531257 CC2D2AQ9P2K1 1620 aa23.04■■□□□ 1.28
FOXRED1-211ENST00000531257 EIF4G1Q04637 1599 aaKnown RBP22.99■■□□□ 1.27
FOXRED1-211ENST00000531257 CECR2Q9BXF3 1484 aa22.92■■□□□ 1.26
FOXRED1-211ENST00000531257 SMARCA4P51532 1647 aa22.24■■□□□ 1.15
FOXRED1-211ENST00000531257 NCAPD3P42695 1498 aa22.2■■□□□ 1.14
FOXRED1-211ENST00000531257 ATAD2BQ9ULI0 1458 aa22.17■■□□□ 1.14
FOXRED1-211ENST00000531257 SMARCA2P51531 1590 aa22.15■■□□□ 1.14
FOXRED1-211ENST00000531257 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
FOXRED1-211ENST00000531257 HMGXB3Q12766 1538 aa22.09■■□□□ 1.13
FOXRED1-211ENST00000531257 ERCC6Q03468 1493 aa22.01■■□□□ 1.11
FOXRED1-211ENST00000531257 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
FOXRED1-211ENST00000531257 PEG3Q9GZU2 1588 aa21.96■■□□□ 1.11
FOXRED1-211ENST00000531257 MROH2BQ7Z745 1585 aa21.95■■□□□ 1.11
FOXRED1-211ENST00000531257 NESP48681 1621 aa21.91■■□□□ 1.1
FOXRED1-211ENST00000531257 CUX2O14529 1486 aa21.88■■□□□ 1.09
FOXRED1-211ENST00000531257 WIZO95785 1651 aa21.77■■□□□ 1.08
FOXRED1-211ENST00000531257 LAMC3Q9Y6N6 1575 aa21.77■■□□□ 1.08
FOXRED1-211ENST00000531257 DNAJC5Q9H3Z4 198 aa21.75■■□□□ 1.07
FOXRED1-211ENST00000531257 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
FOXRED1-211ENST00000531257 THOC2Q8NI27 1593 aaKnown RBP21.69■■□□□ 1.06
FOXRED1-211ENST00000531257 PDS5BQ9NTI5 1447 aa21.6■■□□□ 1.05
FOXRED1-211ENST00000531257 CADPSQ9ULU8 1353 aa21.54■■□□□ 1.04
FOXRED1-211ENST00000531257 RSF1Q96T23 1441 aaPredicted RBP21.48■■□□□ 1.03
FOXRED1-211ENST00000531257 TOP2AP11388 1531 aaKnown RBP21.43■■□□□ 1.02
FOXRED1-211ENST00000531257 MRC2Q9UBG0 1479 aa21.42■■□□□ 1.02
FOXRED1-211ENST00000531257 CEP164Q9UPV0 1460 aa21.38■■□□□ 1.01
FOXRED1-211ENST00000531257 WDR62O43379 1518 aa21.37■■□□□ 1.01
FOXRED1-211ENST00000531257 FANCD2Q9BXW9 1451 aa21.34■■□□□ 1.01
FOXRED1-211ENST00000531257 CFTRP13569 1480 aa21.32■■□□□ 1
FOXRED1-211ENST00000531257 PRDM2Q13029 1718 aa21.3■■□□□ 1
FOXRED1-211ENST00000531257 CCDC88BA6NC98 1476 aa21.17■□□□□ 0.98
FOXRED1-211ENST00000531257 URB2Q14146 1524 aaKnown RBP21.16■□□□□ 0.98
FOXRED1-211ENST00000531257 TOPBP1Q92547 1522 aa20.95■□□□□ 0.94
FOXRED1-211ENST00000531257 TRIM41Q8WV44 630 aa20.93■□□□□ 0.94
FOXRED1-211ENST00000531257 IFT140Q96RY7 1462 aa20.91■□□□□ 0.94
FOXRED1-211ENST00000531257 DNMBPQ6XZF7 1577 aa20.9■□□□□ 0.94
FOXRED1-211ENST00000531257 ABCC8Q09428 1581 aa20.89■□□□□ 0.94
FOXRED1-211ENST00000531257 ZNF608Q9ULD9 1512 aaPredicted RBP20.89■□□□□ 0.94
FOXRED1-211ENST00000531257 OSCARQ8IYS5 282 aa20.89■□□□□ 0.93
FOXRED1-211ENST00000531257 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
FOXRED1-211ENST00000531257 TARBP1Q13395 1621 aaKnown RBP20.78■□□□□ 0.92
FOXRED1-211ENST00000531257 CHD1O14646 1710 aa20.74■□□□□ 0.91
FOXRED1-211ENST00000531257 POLA1P09884 1462 aaPredicted RBP20.73■□□□□ 0.91
FOXRED1-211ENST00000531257 AQRO60306 1485 aaKnown RBP eCLIP20.71■□□□□ 0.917e-7■■■□□ 19.1
FOXRED1-211ENST00000531257 RIMBP3CA6NJZ7 1639 aa20.7■□□□□ 0.9
FOXRED1-211ENST00000531257 RIMBP3BA6NNM3 1639 aa20.7■□□□□ 0.9
FOXRED1-211ENST00000531257 RIMBP3Q9UFD9 1639 aa20.7■□□□□ 0.9
FOXRED1-211ENST00000531257 SUPT5HO00267 1087 aaKnown RBP20.67■□□□□ 0.9
FOXRED1-211ENST00000531257 RAD54L2Q9Y4B4 1467 aa20.67■□□□□ 0.9
FOXRED1-211ENST00000531257 FGD5Q6ZNL6 1462 aa20.63■□□□□ 0.89
FOXRED1-211ENST00000531257 SOGA1O94964 1423 aa20.63■□□□□ 0.89
FOXRED1-211ENST00000531257 CUX1P39880 1505 aa20.62■□□□□ 0.89
FOXRED1-211ENST00000531257 FBLN2P98095 1184 aa20.6■□□□□ 0.89
FOXRED1-211ENST00000531257 ARHGEF11O15085 1522 aa20.59■□□□□ 0.89
FOXRED1-211ENST00000531257 TDRD9Q8NDG6 1382 aaKnown RBP20.59■□□□□ 0.89
FOXRED1-211ENST00000531257 WDR97A6NE52 1622 aa20.56■□□□□ 0.88
FOXRED1-211ENST00000531257 SNAPC4Q5SXM2 1469 aa20.52■□□□□ 0.88
FOXRED1-211ENST00000531257 PBRM1Q86U86 1689 aa20.51■□□□□ 0.87
FOXRED1-211ENST00000531257 GRIN2BQ13224 1484 aa20.44■□□□□ 0.86
FOXRED1-211ENST00000531257 MAGI1Q96QZ7 1491 aaPredicted RBP20.44■□□□□ 0.86
FOXRED1-211ENST00000531257 CYB5RLQ6IPT4 315 aa20.43■□□□□ 0.86
FOXRED1-211ENST00000531257 CHMP7Q8WUX9 453 aaPredicted RBP20.42■□□□□ 0.86
FOXRED1-211ENST00000531257 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
FOXRED1-211ENST00000531257 GAPVD1Q14C86 1478 aa20.4■□□□□ 0.86
FOXRED1-211ENST00000531257 ABCA5Q8WWZ7 1642 aa20.38■□□□□ 0.85
FOXRED1-211ENST00000531257 CLASP1Q7Z460 1538 aa20.38■□□□□ 0.85
FOXRED1-211ENST00000531257 ARAP1Q96P48 1450 aa20.38■□□□□ 0.85
FOXRED1-211ENST00000531257 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
FOXRED1-211ENST00000531257 SYNJ2O15056 1496 aa20.37■□□□□ 0.85
FOXRED1-211ENST00000531257 BIVM-ERCC5R4GMW8 1640 aa20.36■□□□□ 0.85
FOXRED1-211ENST00000531257 TOP2BQ02880 1626 aa20.33■□□□□ 0.84
FOXRED1-211ENST00000531257 WRNQ14191 1432 aaPredicted RBP eCLIP20.3■□□□□ 0.84
FOXRED1-211ENST00000531257 ADAMTS12P58397 1594 aa20.23■□□□□ 0.83
FOXRED1-211ENST00000531257 TRHP20396 242 aaPredicted RBP20.22■□□□□ 0.83
FOXRED1-211ENST00000531257 GRIN2AQ12879 1464 aa20.19■□□□□ 0.82
FOXRED1-211ENST00000531257 CEP170Q5SW79 1584 aa20.16■□□□□ 0.82
FOXRED1-211ENST00000531257 ERICH3Q5RHP9 1530 aa20.13■□□□□ 0.81
FOXRED1-211ENST00000531257 FHAD1B1AJZ9 1412 aa20.12■□□□□ 0.81
FOXRED1-211ENST00000531257 ERCC6L2Q5T890 1561 aa20.1■□□□□ 0.81
FOXRED1-211ENST00000531257 NUP160Q12769 1436 aa20.08■□□□□ 0.8
FOXRED1-211ENST00000531257 SHROOM2Q13796 1616 aa20.05■□□□□ 0.8
FOXRED1-211ENST00000531257 RUSC2Q8N2Y8 1516 aa19.95■□□□□ 0.78
FOXRED1-211ENST00000531257 CUL7Q14999 1698 aa19.92■□□□□ 0.78
FOXRED1-211ENST00000531257 PRG4Q92954 1404 aaPredicted RBP19.92■□□□□ 0.78
FOXRED1-211ENST00000531257 JPH4Q96JJ6 628 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 181.2 ms