RNA–Protein interactions for RNA: ENST00000530996.5

CHMP4A-204, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3 BASIC

Gene CHMP4A, Length 967 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-204ENST00000530996 NISCHQ9Y2I1 1504 aa39.57■■■■□ 3.93
CHMP4A-204ENST00000530996 ABCC9O60706 1549 aa35.64■■■■□ 3.3
CHMP4A-204ENST00000530996 CCDC180Q9P1Z9 1646 aa35.53■■■■□ 3.28
CHMP4A-204ENST00000530996 RB1CC1Q8TDY2 1594 aa33.88■■■■□ 3.01
CHMP4A-204ENST00000530996 NACADO15069 1562 aa33.6■■■□□ 2.97
CHMP4A-204ENST00000530996 DCAF8L2P0C7V8 631 aa33.52■■■□□ 2.96
CHMP4A-204ENST00000530996 DNAJC5BQ9UF47 199 aa33.31■■■□□ 2.92
CHMP4A-204ENST00000530996 PABPN1Q86U42 306 aaKnown RBP eCLIP33.15■■■□□ 2.9
CHMP4A-204ENST00000530996 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.88
CHMP4A-204ENST00000530996 UNC13AQ9UPW8 1703 aa32.99■■■□□ 2.87
CHMP4A-204ENST00000530996 ZCCHC6Q5VYS8 1495 aaKnown RBP32.82■■■□□ 2.84
CHMP4A-204ENST00000530996 BICRAQ9NZM4 1560 aa32.81■■■□□ 2.84
CHMP4A-204ENST00000530996 DCAF1Q9Y4B6 1507 aa32.64■■■□□ 2.82
CHMP4A-204ENST00000530996 SCRIBQ14160 1630 aa32.48■■■□□ 2.79
CHMP4A-204ENST00000530996 SHROOM4Q9ULL8 1493 aa32.44■■■□□ 2.78
CHMP4A-204ENST00000530996 CC2D2AQ9P2K1 1620 aa32.15■■■□□ 2.74
CHMP4A-204ENST00000530996 CECR2Q9BXF3 1484 aa32.1■■■□□ 2.73
CHMP4A-204ENST00000530996 EIF4G1Q04637 1599 aaKnown RBP32.07■■■□□ 2.72
CHMP4A-204ENST00000530996 NCAPD3P42695 1498 aa30.98■■■□□ 2.55
CHMP4A-204ENST00000530996 ATAD2BQ9ULI0 1458 aa30.92■■■□□ 2.54
CHMP4A-204ENST00000530996 SMARCA4P51532 1647 aa30.91■■■□□ 2.54
CHMP4A-204ENST00000530996 SMARCA2P51531 1590 aa30.88■■■□□ 2.53
CHMP4A-204ENST00000530996 ERCC6Q03468 1493 aa30.85■■■□□ 2.53
CHMP4A-204ENST00000530996 HMGXB3Q12766 1538 aa30.82■■■□□ 2.52
CHMP4A-204ENST00000530996 BAZ1AQ9NRL2 1556 aaPredicted RBP30.76■■■□□ 2.52
CHMP4A-204ENST00000530996 CUX2O14529 1486 aa30.71■■■□□ 2.51
CHMP4A-204ENST00000530996 BAZ1BQ9UIG0 1483 aaKnown RBP30.7■■■□□ 2.51
CHMP4A-204ENST00000530996 DNAJC5Q9H3Z4 198 aa30.63■■■□□ 2.49
CHMP4A-204ENST00000530996 NESP48681 1621 aa30.58■■■□□ 2.49
CHMP4A-204ENST00000530996 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
CHMP4A-204ENST00000530996 MROH2BQ7Z745 1585 aa30.5■■■□□ 2.47
CHMP4A-204ENST00000530996 LAMC3Q9Y6N6 1575 aa30.34■■■□□ 2.45
CHMP4A-204ENST00000530996 THOC2Q8NI27 1593 aaKnown RBP30.27■■■□□ 2.44
CHMP4A-204ENST00000530996 PDS5BQ9NTI5 1447 aa30.2■■■□□ 2.42
CHMP4A-204ENST00000530996 KIF21AQ7Z4S6 1674 aa30.16■■■□□ 2.42
CHMP4A-204ENST00000530996 WIZO95785 1651 aa30.13■■■□□ 2.41
CHMP4A-204ENST00000530996 CADPSQ9ULU8 1353 aa30.07■■■□□ 2.4
CHMP4A-204ENST00000530996 MRC2Q9UBG0 1479 aa29.96■■■□□ 2.39
CHMP4A-204ENST00000530996 CEP164Q9UPV0 1460 aa29.86■■■□□ 2.37
CHMP4A-204ENST00000530996 RSF1Q96T23 1441 aaPredicted RBP29.85■■■□□ 2.37
CHMP4A-204ENST00000530996 WDR62O43379 1518 aa29.85■■■□□ 2.37
CHMP4A-204ENST00000530996 TOP2AP11388 1531 aaKnown RBP29.8■■■□□ 2.36
CHMP4A-204ENST00000530996 FANCD2Q9BXW9 1451 aa29.79■■■□□ 2.36
CHMP4A-204ENST00000530996 CFTRP13569 1480 aa29.72■■■□□ 2.35
CHMP4A-204ENST00000530996 URB2Q14146 1524 aaKnown RBP29.52■■■□□ 2.32
CHMP4A-204ENST00000530996 TRIM41Q8WV44 630 aa29.45■■■□□ 2.31
CHMP4A-204ENST00000530996 CCDC88BA6NC98 1476 aa29.41■■■□□ 2.3
CHMP4A-204ENST00000530996 PRDM2Q13029 1718 aa29.4■■■□□ 2.3
CHMP4A-204ENST00000530996 OSCARQ8IYS5 282 aa29.26■■■□□ 2.27
CHMP4A-204ENST00000530996 IFT140Q96RY7 1462 aa29.23■■■□□ 2.27
CHMP4A-204ENST00000530996 TOPBP1Q92547 1522 aa29.2■■■□□ 2.27
CHMP4A-204ENST00000530996 ZNF608Q9ULD9 1512 aaPredicted RBP29.17■■■□□ 2.26
CHMP4A-204ENST00000530996 ABCC8Q09428 1581 aa29.1■■■□□ 2.25
CHMP4A-204ENST00000530996 DNMBPQ6XZF7 1577 aa29.1■■■□□ 2.25
CHMP4A-204ENST00000530996 EIF4G3O43432 1585 aaKnown RBP29.05■■■□□ 2.24
CHMP4A-204ENST00000530996 RIMBP3CA6NJZ7 1639 aa28.91■■■□□ 2.22
CHMP4A-204ENST00000530996 RIMBP3BA6NNM3 1639 aa28.91■■■□□ 2.22
CHMP4A-204ENST00000530996 RIMBP3Q9UFD9 1639 aa28.91■■■□□ 2.22
CHMP4A-204ENST00000530996 POLA1P09884 1462 aaPredicted RBP28.91■■■□□ 2.22
CHMP4A-204ENST00000530996 TARBP1Q13395 1621 aaKnown RBP28.9■■■□□ 2.22
CHMP4A-204ENST00000530996 AQRO60306 1485 aaKnown RBP eCLIP28.9■■■□□ 2.224e-8■■■■□ 23.3
CHMP4A-204ENST00000530996 ARHGEF11O15085 1522 aa28.84■■■□□ 2.21
CHMP4A-204ENST00000530996 RAD54L2Q9Y4B4 1467 aa28.8■■■□□ 2.2
CHMP4A-204ENST00000530996 FBLN2P98095 1184 aa28.8■■■□□ 2.2
CHMP4A-204ENST00000530996 CHD1O14646 1710 aa28.78■■■□□ 2.2
CHMP4A-204ENST00000530996 SOGA1O94964 1423 aa28.76■■■□□ 2.19
CHMP4A-204ENST00000530996 FGD5Q6ZNL6 1462 aa28.74■■■□□ 2.19
CHMP4A-204ENST00000530996 TDRD9Q8NDG6 1382 aaKnown RBP28.73■■■□□ 2.19
CHMP4A-204ENST00000530996 CUX1P39880 1505 aa28.68■■■□□ 2.18
CHMP4A-204ENST00000530996 SNAPC4Q5SXM2 1469 aa28.66■■■□□ 2.18
CHMP4A-204ENST00000530996 WDR97A6NE52 1622 aa28.63■■■□□ 2.17
CHMP4A-204ENST00000530996 SUPT5HO00267 1087 aaKnown RBP28.61■■■□□ 2.17
CHMP4A-204ENST00000530996 CYB5RLQ6IPT4 315 aa28.61■■■□□ 2.17
CHMP4A-204ENST00000530996 ARAP1Q96P48 1450 aa28.56■■■□□ 2.16
CHMP4A-204ENST00000530996 GRIN2BQ13224 1484 aa28.54■■■□□ 2.16
CHMP4A-204ENST00000530996 MAGI1Q96QZ7 1491 aaPredicted RBP28.54■■■□□ 2.16
CHMP4A-204ENST00000530996 CHMP7Q8WUX9 453 aaPredicted RBP28.53■■■□□ 2.16
CHMP4A-204ENST00000530996 SYNJ1O43426 1573 aa28.49■■■□□ 2.15
CHMP4A-204ENST00000530996 CLASP1Q7Z460 1538 aa28.45■■■□□ 2.15
CHMP4A-204ENST00000530996 SYNJ2O15056 1496 aa28.45■■■□□ 2.14
CHMP4A-204ENST00000530996 GAPVD1Q14C86 1478 aa28.43■■■□□ 2.14
CHMP4A-204ENST00000530996 PBRM1Q86U86 1689 aa28.41■■■□□ 2.14
CHMP4A-204ENST00000530996 TRHP20396 242 aaPredicted RBP28.39■■■□□ 2.14
CHMP4A-204ENST00000530996 ABCA10Q8WWZ4 1543 aa28.38■■■□□ 2.13
CHMP4A-204ENST00000530996 ABCA5Q8WWZ7 1642 aa28.35■■■□□ 2.13
CHMP4A-204ENST00000530996 WRNQ14191 1432 aaPredicted RBP eCLIP28.29■■■□□ 2.12
CHMP4A-204ENST00000530996 TOP2BQ02880 1626 aa28.2■■■□□ 2.1
CHMP4A-204ENST00000530996 BIVM-ERCC5R4GMW8 1640 aa28.19■■■□□ 2.1
CHMP4A-204ENST00000530996 ADAMTS12P58397 1594 aa28.18■■■□□ 2.1
CHMP4A-204ENST00000530996 GRIN2AQ12879 1464 aa28.17■■■□□ 2.1
CHMP4A-204ENST00000530996 FHAD1B1AJZ9 1412 aa28.07■■■□□ 2.08
CHMP4A-204ENST00000530996 CEP170Q5SW79 1584 aa28.07■■■□□ 2.08
CHMP4A-204ENST00000530996 NUP160Q12769 1436 aa28.04■■■□□ 2.08
CHMP4A-204ENST00000530996 ERICH3Q5RHP9 1530 aa28.02■■■□□ 2.08
CHMP4A-204ENST00000530996 ERCC6L2Q5T890 1561 aa28.01■■■□□ 2.07
CHMP4A-204ENST00000530996 SHROOM2Q13796 1616 aa27.9■■■□□ 2.06
CHMP4A-204ENST00000530996 PRG4Q92954 1404 aaPredicted RBP27.83■■■□□ 2.05
CHMP4A-204ENST00000530996 RUSC2Q8N2Y8 1516 aa27.78■■■□□ 2.04
CHMP4A-204ENST00000530996 JPH4Q96JJ6 628 aa27.73■■■□□ 2.03
CHMP4A-204ENST00000530996 KIF27Q86VH2 1401 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms