RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-208ENST00000529994 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
SF3B2-208ENST00000529994 ABCC9O60706 1549 aa26.37■■□□□ 1.81
SF3B2-208ENST00000529994 CCDC180Q9P1Z9 1646 aa25.95■■□□□ 1.74
SF3B2-208ENST00000529994 DNAJC5BQ9UF47 199 aa25.04■■□□□ 1.6
SF3B2-208ENST00000529994 RB1CC1Q8TDY2 1594 aa24.88■■□□□ 1.57
SF3B2-208ENST00000529994 NACADO15069 1562 aa24.6■■□□□ 1.53
SF3B2-208ENST00000529994 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
SF3B2-208ENST00000529994 PABPN1Q86U42 306 aaKnown RBP eCLIP24.53■■□□□ 1.52
SF3B2-208ENST00000529994 UNC13AQ9UPW8 1703 aa24.39■■□□□ 1.5
SF3B2-208ENST00000529994 BICRAQ9NZM4 1560 aa24.2■■□□□ 1.46
SF3B2-208ENST00000529994 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
SF3B2-208ENST00000529994 CC2D2AQ9P2K1 1620 aa23.77■■□□□ 1.4
SF3B2-208ENST00000529994 ZCCHC6Q5VYS8 1495 aaKnown RBP23.77■■□□□ 1.4
SF3B2-208ENST00000529994 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
SF3B2-208ENST00000529994 SCRIBQ14160 1630 aa23.72■■□□□ 1.39
SF3B2-208ENST00000529994 SHROOM4Q9ULL8 1493 aa23.71■■□□□ 1.39
SF3B2-208ENST00000529994 DCAF1Q9Y4B6 1507 aa23.69■■□□□ 1.38
SF3B2-208ENST00000529994 EIF4G1Q04637 1599 aaKnown RBP23.62■■□□□ 1.37
SF3B2-208ENST00000529994 DNAJC5Q9H3Z4 198 aa23.18■■□□□ 1.3
SF3B2-208ENST00000529994 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
SF3B2-208ENST00000529994 CUX2O14529 1486 aa22.77■■□□□ 1.24
SF3B2-208ENST00000529994 NCAPD3P42695 1498 aa22.72■■□□□ 1.23
SF3B2-208ENST00000529994 ATAD2BQ9ULI0 1458 aa22.63■■□□□ 1.21
SF3B2-208ENST00000529994 NESP48681 1621 aa22.57■■□□□ 1.2
SF3B2-208ENST00000529994 SMARCA4P51532 1647 aa22.54■■□□□ 1.2
SF3B2-208ENST00000529994 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
SF3B2-208ENST00000529994 HMGXB3Q12766 1538 aa22.52■■□□□ 1.19
SF3B2-208ENST00000529994 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
SF3B2-208ENST00000529994 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
SF3B2-208ENST00000529994 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
SF3B2-208ENST00000529994 LAMC3Q9Y6N6 1575 aa22.27■■□□□ 1.16
SF3B2-208ENST00000529994 KIF21AQ7Z4S6 1674 aa22.26■■□□□ 1.15
SF3B2-208ENST00000529994 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
SF3B2-208ENST00000529994 MROH2BQ7Z745 1585 aa22.21■■□□□ 1.15
SF3B2-208ENST00000529994 PDS5BQ9NTI5 1447 aa22.15■■□□□ 1.14
SF3B2-208ENST00000529994 TRIM41Q8WV44 630 aa22.12■■□□□ 1.13
SF3B2-208ENST00000529994 CADPSQ9ULU8 1353 aa22.03■■□□□ 1.12
SF3B2-208ENST00000529994 MRC2Q9UBG0 1479 aa22■■□□□ 1.11
SF3B2-208ENST00000529994 WIZO95785 1651 aa21.96■■□□□ 1.11
SF3B2-208ENST00000529994 WDR62O43379 1518 aa21.95■■□□□ 1.1
SF3B2-208ENST00000529994 CEP164Q9UPV0 1460 aa21.85■■□□□ 1.09
SF3B2-208ENST00000529994 FANCD2Q9BXW9 1451 aa21.81■■□□□ 1.08
SF3B2-208ENST00000529994 OSCARQ8IYS5 282 aa21.73■■□□□ 1.07
SF3B2-208ENST00000529994 CFTRP13569 1480 aa21.71■■□□□ 1.07
SF3B2-208ENST00000529994 URB2Q14146 1524 aaKnown RBP21.66■■□□□ 1.06
SF3B2-208ENST00000529994 RSF1Q96T23 1441 aaPredicted RBP21.61■■□□□ 1.05
SF3B2-208ENST00000529994 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
SF3B2-208ENST00000529994 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
SF3B2-208ENST00000529994 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
SF3B2-208ENST00000529994 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
SF3B2-208ENST00000529994 PRDM2Q13029 1718 aa21.49■■□□□ 1.03
SF3B2-208ENST00000529994 ZNF608Q9ULD9 1512 aaPredicted RBP21.47■■□□□ 1.03
SF3B2-208ENST00000529994 IFT140Q96RY7 1462 aa21.41■■□□□ 1.02
SF3B2-208ENST00000529994 ARHGEF11O15085 1522 aa21.39■■□□□ 1.01
SF3B2-208ENST00000529994 CCDC88BA6NC98 1476 aa21.38■■□□□ 1.01
SF3B2-208ENST00000529994 TOPBP1Q92547 1522 aa21.36■■□□□ 1.01
SF3B2-208ENST00000529994 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
SF3B2-208ENST00000529994 CYB5RLQ6IPT4 315 aa21.29■■□□□ 1
SF3B2-208ENST00000529994 CHD1O14646 1710 aa21.26■□□□□ 0.99
SF3B2-208ENST00000529994 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
SF3B2-208ENST00000529994 DNMBPQ6XZF7 1577 aa21.23■□□□□ 0.99
SF3B2-208ENST00000529994 AQRO60306 1485 aaKnown RBP eCLIP21.23■□□□□ 0.993e-14■■■□□ 16.2
SF3B2-208ENST00000529994 FBLN2P98095 1184 aa21.2■□□□□ 0.98
SF3B2-208ENST00000529994 TARBP1Q13395 1621 aaKnown RBP21.19■□□□□ 0.98
SF3B2-208ENST00000529994 TRHP20396 242 aaPredicted RBP21.18■□□□□ 0.98
SF3B2-208ENST00000529994 ARAP1Q96P48 1450 aa21.15■□□□□ 0.98
SF3B2-208ENST00000529994 POLA1P09884 1462 aaPredicted RBP21.12■□□□□ 0.97
SF3B2-208ENST00000529994 RAD54L2Q9Y4B4 1467 aa21.09■□□□□ 0.97
SF3B2-208ENST00000529994 TDRD9Q8NDG6 1382 aaKnown RBP21.06■□□□□ 0.96
SF3B2-208ENST00000529994 SOGA1O94964 1423 aa21.02■□□□□ 0.96
SF3B2-208ENST00000529994 SNAPC4Q5SXM2 1469 aa20.99■□□□□ 0.95
SF3B2-208ENST00000529994 FGD5Q6ZNL6 1462 aa20.95■□□□□ 0.94
SF3B2-208ENST00000529994 CHMP7Q8WUX9 453 aaPredicted RBP20.95■□□□□ 0.94
SF3B2-208ENST00000529994 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
SF3B2-208ENST00000529994 SYNJ1O43426 1573 aa20.9■□□□□ 0.94
SF3B2-208ENST00000529994 CUX1P39880 1505 aa20.88■□□□□ 0.93
SF3B2-208ENST00000529994 MAGI1Q96QZ7 1491 aaPredicted RBP20.88■□□□□ 0.93
SF3B2-208ENST00000529994 WDR97A6NE52 1622 aa20.87■□□□□ 0.93
SF3B2-208ENST00000529994 GRIN2BQ13224 1484 aa20.86■□□□□ 0.93
SF3B2-208ENST00000529994 SYNJ2O15056 1496 aa20.82■□□□□ 0.92
SF3B2-208ENST00000529994 PBRM1Q86U86 1689 aa20.8■□□□□ 0.92
SF3B2-208ENST00000529994 AEBP2Q6ZN18 517 aaPredicted RBP20.79■□□□□ 0.92
SF3B2-208ENST00000529994 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
SF3B2-208ENST00000529994 ABCA5Q8WWZ7 1642 aa20.67■□□□□ 0.9
SF3B2-208ENST00000529994 ABCA10Q8WWZ4 1543 aa20.66■□□□□ 0.9
SF3B2-208ENST00000529994 ERCC6L2Q5T890 1561 aa20.66■□□□□ 0.9
SF3B2-208ENST00000529994 GRIN2AQ12879 1464 aa20.6■□□□□ 0.89
SF3B2-208ENST00000529994 CEP170Q5SW79 1584 aa20.56■□□□□ 0.88
SF3B2-208ENST00000529994 ADAMTS12P58397 1594 aa20.55■□□□□ 0.88
SF3B2-208ENST00000529994 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
SF3B2-208ENST00000529994 NUP160Q12769 1436 aa20.52■□□□□ 0.87
SF3B2-208ENST00000529994 SUPT5HO00267 1087 aaKnown RBP20.51■□□□□ 0.87
SF3B2-208ENST00000529994 SHROOM2Q13796 1616 aa20.48■□□□□ 0.87
SF3B2-208ENST00000529994 FHAD1B1AJZ9 1412 aa20.45■□□□□ 0.86
SF3B2-208ENST00000529994 KIF13AQ9H1H9 1805 aa20.45■□□□□ 0.86
SF3B2-208ENST00000529994 BIVM-ERCC5R4GMW8 1640 aa20.44■□□□□ 0.86
SF3B2-208ENST00000529994 TOP2BQ02880 1626 aa20.43■□□□□ 0.86
SF3B2-208ENST00000529994 PRG4Q92954 1404 aaPredicted RBP20.39■□□□□ 0.85
SF3B2-208ENST00000529994 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
SF3B2-208ENST00000529994 JPH4Q96JJ6 628 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms