RNA–Protein interactions for RNA: ENST00000529214.5

ATPAF1-209, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-209ENST00000529214 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
ATPAF1-209ENST00000529214 CHIC1Q5VXU3 224 aa16.33■□□□□ 0.2
ATPAF1-209ENST00000529214 SENP3Q9H4L4 574 aaPredicted RBP15□□□□□ -0.01
ATPAF1-209ENST00000529214 NISCHQ9Y2I1 1504 aa14.94□□□□□ -0.02
ATPAF1-209ENST00000529214 PHF23Q9BUL5 403 aaPredicted RBP14.69□□□□□ -0.06
ATPAF1-209ENST00000529214 FOXD1Q16676 465 aa13.99□□□□□ -0.17
ATPAF1-209ENST00000529214 POTEDQ86YR6 584 aa13.96□□□□□ -0.17
ATPAF1-209ENST00000529214 MSH5O43196 834 aa13.38□□□□□ -0.27
ATPAF1-209ENST00000529214 CCDC180Q9P1Z9 1646 aa13.18□□□□□ -0.3
ATPAF1-209ENST00000529214 PIAS4Q8N2W9 510 aaPredicted RBP12.96□□□□□ -0.34
ATPAF1-209ENST00000529214 ABCC9O60706 1549 aa12.91□□□□□ -0.34
ATPAF1-209ENST00000529214 PPP6R1Q9UPN7 881 aa12.62□□□□□ -0.39
ATPAF1-209ENST00000529214 PLPPR3Q6T4P5 718 aa12.56□□□□□ -0.4
ATPAF1-209ENST00000529214 ADRA2BP18089 450 aa12.55□□□□□ -0.4
ATPAF1-209ENST00000529214 DCAF8L2P0C7V8 631 aa12.53□□□□□ -0.4
ATPAF1-209ENST00000529214 NACADO15069 1562 aa12.43□□□□□ -0.42
ATPAF1-209ENST00000529214 ZCCHC6Q5VYS8 1495 aaKnown RBP12.43□□□□□ -0.42
ATPAF1-209ENST00000529214 RB1CC1Q8TDY2 1594 aa12.41□□□□□ -0.42
ATPAF1-209ENST00000529214 MYO15BQ96JP2 1530 aa12.4□□□□□ -0.42
ATPAF1-209ENST00000529214 DCAF1Q9Y4B6 1507 aa12.36□□□□□ -0.43
ATPAF1-209ENST00000529214 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
ATPAF1-209ENST00000529214 UNC13AQ9UPW8 1703 aa12.09□□□□□ -0.47
ATPAF1-209ENST00000529214 SCRIBQ14160 1630 aa12.05□□□□□ -0.48
ATPAF1-209ENST00000529214 BICRAQ9NZM4 1560 aa12.05□□□□□ -0.48
ATPAF1-209ENST00000529214 SHROOM4Q9ULL8 1493 aa11.92□□□□□ -0.5
ATPAF1-209ENST00000529214 EHMT2Q96KQ7 1210 aa11.91□□□□□ -0.5
ATPAF1-209ENST00000529214 DNAJC5BQ9UF47 199 aa11.87□□□□□ -0.51
ATPAF1-209ENST00000529214 CACNB1Q02641 598 aaPredicted RBP11.8□□□□□ -0.52
ATPAF1-209ENST00000529214 DMRT2Q9Y5R5 561 aa11.79□□□□□ -0.52
ATPAF1-209ENST00000529214 SLC24A1O60721 1099 aa11.73□□□□□ -0.53
ATPAF1-209ENST00000529214 EIF4G1Q04637 1599 aaKnown RBP11.72□□□□□ -0.53
ATPAF1-209ENST00000529214 MAPK8IP2Q13387 824 aaPredicted RBP11.69□□□□□ -0.54
ATPAF1-209ENST00000529214 CC2D2AQ9P2K1 1620 aa11.65□□□□□ -0.54
ATPAF1-209ENST00000529214 CECR2Q9BXF3 1484 aa11.65□□□□□ -0.54
ATPAF1-209ENST00000529214 SCAF1Q9H7N4 1312 aaKnown RBP11.59□□□□□ -0.55
ATPAF1-209ENST00000529214 BAZ1AQ9NRL2 1556 aaPredicted RBP11.56□□□□□ -0.56
ATPAF1-209ENST00000529214 SMARCA4P51532 1647 aa11.54□□□□□ -0.56
ATPAF1-209ENST00000529214 NCAPD3P42695 1498 aa11.51□□□□□ -0.57
ATPAF1-209ENST00000529214 MROH2BQ7Z745 1585 aa11.51□□□□□ -0.57
ATPAF1-209ENST00000529214 ATAD2BQ9ULI0 1458 aa11.51□□□□□ -0.57
ATPAF1-209ENST00000529214 SMARCA2P51531 1590 aa11.47□□□□□ -0.57
ATPAF1-209ENST00000529214 PEG3Q9GZU2 1588 aa11.45□□□□□ -0.58
ATPAF1-209ENST00000529214 RSF1Q96T23 1441 aaPredicted RBP11.43□□□□□ -0.58
ATPAF1-209ENST00000529214 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
ATPAF1-209ENST00000529214 BAZ1BQ9UIG0 1483 aaKnown RBP11.39□□□□□ -0.59
ATPAF1-209ENST00000529214 KCNA4P22459 653 aa11.38□□□□□ -0.59
ATPAF1-209ENST00000529214 WIZO95785 1651 aa11.36□□□□□ -0.59
ATPAF1-209ENST00000529214 RNF39Q9H2S5 420 aa11.32□□□□□ -0.6
ATPAF1-209ENST00000529214 DCAF8L1A6NGE4 600 aa11.32□□□□□ -0.6
ATPAF1-209ENST00000529214 CSRNP3Q8WYN3 585 aa11.25□□□□□ -0.61
ATPAF1-209ENST00000529214 TOP2AP11388 1531 aaKnown RBP11.25□□□□□ -0.61
ATPAF1-209ENST00000529214 SUPT5HO00267 1087 aaKnown RBP11.22□□□□□ -0.61
ATPAF1-209ENST00000529214 CADPSQ9ULU8 1353 aa11.19□□□□□ -0.62
ATPAF1-209ENST00000529214 NESP48681 1621 aa11.18□□□□□ -0.62
ATPAF1-209ENST00000529214 C1QBPQ07021 282 aaKnown RBP11.17□□□□□ -0.62
ATPAF1-209ENST00000529214 CCDC88BA6NC98 1476 aa11.16□□□□□ -0.62
ATPAF1-209ENST00000529214 LAMC3Q9Y6N6 1575 aa11.15□□□□□ -0.62
ATPAF1-209ENST00000529214 HOXD11P31277 338 aaPredicted RBP11.13□□□□□ -0.63
ATPAF1-209ENST00000529214 PDS5BQ9NTI5 1447 aa11.11□□□□□ -0.63
ATPAF1-209ENST00000529214 CFTRP13569 1480 aa11.11□□□□□ -0.63
ATPAF1-209ENST00000529214 ERCC6Q03468 1493 aa11.1□□□□□ -0.63
ATPAF1-209ENST00000529214 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
ATPAF1-209ENST00000529214 AMER1Q5JTC6 1135 aaPredicted RBP11.03□□□□□ -0.64
ATPAF1-209ENST00000529214 SLC4A1APQ9BWU0 796 aaKnown RBP11.02□□□□□ -0.65
ATPAF1-209ENST00000529214 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.65
ATPAF1-209ENST00000529214 KIF21AQ7Z4S6 1674 aa10.99□□□□□ -0.65
ATPAF1-209ENST00000529214 CEP164Q9UPV0 1460 aa10.98□□□□□ -0.65
ATPAF1-209ENST00000529214 CUX2O14529 1486 aa10.97□□□□□ -0.65
ATPAF1-209ENST00000529214 MRC2Q9UBG0 1479 aa10.96□□□□□ -0.65
ATPAF1-209ENST00000529214 THOC2Q8NI27 1593 aaKnown RBP10.95□□□□□ -0.66
ATPAF1-209ENST00000529214 PRDM2Q13029 1718 aa10.92□□□□□ -0.66
ATPAF1-209ENST00000529214 PPP4R3CPQ6ZMV5 832 aa10.91□□□□□ -0.66
ATPAF1-209ENST00000529214 RNF216Q9NWF9 866 aaPredicted RBP10.91□□□□□ -0.66
ATPAF1-209ENST00000529214 WDR62O43379 1518 aa10.91□□□□□ -0.66
ATPAF1-209ENST00000529214 URB2Q14146 1524 aaKnown RBP10.91□□□□□ -0.66
ATPAF1-209ENST00000529214 ABCC8Q09428 1581 aa10.87□□□□□ -0.67
ATPAF1-209ENST00000529214 CNKSR2Q8WXI2 1034 aa10.87□□□□□ -0.67
ATPAF1-209ENST00000529214 POTEHQ6S545 545 aa10.85□□□□□ -0.67
ATPAF1-209ENST00000529214 TOPBP1Q92547 1522 aa10.85□□□□□ -0.67
ATPAF1-209ENST00000529214 DNMBPQ6XZF7 1577 aa10.82□□□□□ -0.68
ATPAF1-209ENST00000529214 CUX1P39880 1505 aa10.78□□□□□ -0.68
ATPAF1-209ENST00000529214 IFT140Q96RY7 1462 aa10.77□□□□□ -0.68
ATPAF1-209ENST00000529214 POLA1P09884 1462 aaPredicted RBP10.76□□□□□ -0.69
ATPAF1-209ENST00000529214 SOGA1O94964 1423 aa10.76□□□□□ -0.69
ATPAF1-209ENST00000529214 WRNQ14191 1432 aaPredicted RBP eCLIP10.76□□□□□ -0.69
ATPAF1-209ENST00000529214 FGD5Q6ZNL6 1462 aa10.74□□□□□ -0.69
ATPAF1-209ENST00000529214 RAD54L2Q9Y4B4 1467 aa10.73□□□□□ -0.69
ATPAF1-209ENST00000529214 ZNF608Q9ULD9 1512 aaPredicted RBP10.72□□□□□ -0.69
ATPAF1-209ENST00000529214 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.7
ATPAF1-209ENST00000529214 TOP2BQ02880 1626 aa10.7□□□□□ -0.7
ATPAF1-209ENST00000529214 TDRD9Q8NDG6 1382 aaKnown RBP10.69□□□□□ -0.7
ATPAF1-209ENST00000529214 AQRO60306 1485 aaKnown RBP eCLIP10.69□□□□□ -0.7
ATPAF1-209ENST00000529214 SYNJ1O43426 1573 aa10.69□□□□□ -0.7
ATPAF1-209ENST00000529214 BIVM-ERCC5R4GMW8 1640 aa10.68□□□□□ -0.7
ATPAF1-209ENST00000529214 ABCA10Q8WWZ4 1543 aa10.65□□□□□ -0.7
ATPAF1-209ENST00000529214 DNAJC5Q9H3Z4 198 aa10.64□□□□□ -0.71
ATPAF1-209ENST00000529214 EIF4G3O43432 1585 aaKnown RBP10.62□□□□□ -0.71
ATPAF1-209ENST00000529214 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.61□□□□□ -0.71
ATPAF1-209ENST00000529214 WDR97A6NE52 1622 aa10.61□□□□□ -0.71
ATPAF1-209ENST00000529214 GAPVD1Q14C86 1478 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms