RNA–Protein interactions for RNA: ENST00000528965.1

CTSB-215, Transcript of cathepsin B, humanhuman

TSL 3

Gene CTSB, Length 556 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSB-215ENST00000528965 NISCHQ9Y2I1 1504 aa39.09■■■■□ 3.85
CTSB-215ENST00000528965 CCDC180Q9P1Z9 1646 aa35.14■■■■□ 3.22
CTSB-215ENST00000528965 ABCC9O60706 1549 aa35.01■■■■□ 3.2
CTSB-215ENST00000528965 RB1CC1Q8TDY2 1594 aa33.43■■■□□ 2.94
CTSB-215ENST00000528965 NACADO15069 1562 aa33.2■■■□□ 2.91
CTSB-215ENST00000528965 DCAF8L2P0C7V8 631 aa32.92■■■□□ 2.86
CTSB-215ENST00000528965 MYO15BQ96JP2 1530 aa32.77■■■□□ 2.84
CTSB-215ENST00000528965 DNAJC5BQ9UF47 199 aa32.68■■■□□ 2.82
CTSB-215ENST00000528965 UNC13AQ9UPW8 1703 aa32.54■■■□□ 2.8
CTSB-215ENST00000528965 PABPN1Q86U42 306 aaKnown RBP eCLIP32.54■■■□□ 2.8
CTSB-215ENST00000528965 ZCCHC6Q5VYS8 1495 aaKnown RBP32.43■■■□□ 2.78
CTSB-215ENST00000528965 DCAF1Q9Y4B6 1507 aa32.35■■■□□ 2.77
CTSB-215ENST00000528965 BICRAQ9NZM4 1560 aa32.34■■■□□ 2.77
CTSB-215ENST00000528965 SHROOM4Q9ULL8 1493 aa32.1■■■□□ 2.73
CTSB-215ENST00000528965 SCRIBQ14160 1630 aa31.96■■■□□ 2.71
CTSB-215ENST00000528965 CC2D2AQ9P2K1 1620 aa31.64■■■□□ 2.66
CTSB-215ENST00000528965 EIF4G1Q04637 1599 aaKnown RBP31.6■■■□□ 2.65
CTSB-215ENST00000528965 CECR2Q9BXF3 1484 aa31.58■■■□□ 2.65
CTSB-215ENST00000528965 NCAPD3P42695 1498 aa30.6■■■□□ 2.49
CTSB-215ENST00000528965 ATAD2BQ9ULI0 1458 aa30.5■■■□□ 2.47
CTSB-215ENST00000528965 SMARCA4P51532 1647 aa30.5■■■□□ 2.47
CTSB-215ENST00000528965 SMARCA2P51531 1590 aa30.49■■■□□ 2.47
CTSB-215ENST00000528965 HMGXB3Q12766 1538 aa30.44■■■□□ 2.46
CTSB-215ENST00000528965 BAZ1AQ9NRL2 1556 aaPredicted RBP30.39■■■□□ 2.46
CTSB-215ENST00000528965 ERCC6Q03468 1493 aa30.31■■■□□ 2.44
CTSB-215ENST00000528965 BAZ1BQ9UIG0 1483 aaKnown RBP30.26■■■□□ 2.44
CTSB-215ENST00000528965 CUX2O14529 1486 aa30.25■■■□□ 2.43
CTSB-215ENST00000528965 PEG3Q9GZU2 1588 aa30.22■■■□□ 2.43
CTSB-215ENST00000528965 DNAJC5Q9H3Z4 198 aa30.2■■■□□ 2.43
CTSB-215ENST00000528965 MROH2BQ7Z745 1585 aa30.08■■■□□ 2.41
CTSB-215ENST00000528965 NESP48681 1621 aa30.04■■■□□ 2.4
CTSB-215ENST00000528965 LAMC3Q9Y6N6 1575 aa29.95■■■□□ 2.39
CTSB-215ENST00000528965 THOC2Q8NI27 1593 aaKnown RBP29.81■■■□□ 2.36
CTSB-215ENST00000528965 PDS5BQ9NTI5 1447 aa29.79■■■□□ 2.36
CTSB-215ENST00000528965 WIZO95785 1651 aa29.71■■■□□ 2.35
CTSB-215ENST00000528965 KIF21AQ7Z4S6 1674 aa29.69■■■□□ 2.34
CTSB-215ENST00000528965 CADPSQ9ULU8 1353 aa29.67■■■□□ 2.34
CTSB-215ENST00000528965 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
CTSB-215ENST00000528965 RSF1Q96T23 1441 aaPredicted RBP29.47■■■□□ 2.31
CTSB-215ENST00000528965 WDR62O43379 1518 aa29.44■■■□□ 2.3
CTSB-215ENST00000528965 TOP2AP11388 1531 aaKnown RBP29.42■■■□□ 2.3
CTSB-215ENST00000528965 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
CTSB-215ENST00000528965 FANCD2Q9BXW9 1451 aa29.36■■■□□ 2.29
CTSB-215ENST00000528965 CFTRP13569 1480 aa29.35■■■□□ 2.29
CTSB-215ENST00000528965 PRDM2Q13029 1718 aa29.08■■■□□ 2.25
CTSB-215ENST00000528965 URB2Q14146 1524 aaKnown RBP29.07■■■□□ 2.24
CTSB-215ENST00000528965 CCDC88BA6NC98 1476 aa29.02■■■□□ 2.24
CTSB-215ENST00000528965 IFT140Q96RY7 1462 aa28.83■■■□□ 2.21
CTSB-215ENST00000528965 OSCARQ8IYS5 282 aa28.81■■■□□ 2.2
CTSB-215ENST00000528965 TRIM41Q8WV44 630 aa28.8■■■□□ 2.2
CTSB-215ENST00000528965 ABCC8Q09428 1581 aa28.79■■■□□ 2.2
CTSB-215ENST00000528965 TOPBP1Q92547 1522 aa28.79■■■□□ 2.2
CTSB-215ENST00000528965 DNMBPQ6XZF7 1577 aa28.72■■■□□ 2.19
CTSB-215ENST00000528965 ZNF608Q9ULD9 1512 aaPredicted RBP28.69■■■□□ 2.18
CTSB-215ENST00000528965 EIF4G3O43432 1585 aaKnown RBP28.6■■■□□ 2.17
CTSB-215ENST00000528965 TARBP1Q13395 1621 aaKnown RBP28.51■■■□□ 2.15
CTSB-215ENST00000528965 POLA1P09884 1462 aaPredicted RBP28.5■■■□□ 2.15
CTSB-215ENST00000528965 RIMBP3CA6NJZ7 1639 aa28.43■■■□□ 2.14
CTSB-215ENST00000528965 RIMBP3BA6NNM3 1639 aa28.43■■■□□ 2.14
CTSB-215ENST00000528965 RIMBP3Q9UFD9 1639 aa28.43■■■□□ 2.14
CTSB-215ENST00000528965 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.145e-8■■■■■ 35
CTSB-215ENST00000528965 ARHGEF11O15085 1522 aa28.37■■■□□ 2.13
CTSB-215ENST00000528965 SOGA1O94964 1423 aa28.35■■■□□ 2.13
CTSB-215ENST00000528965 RAD54L2Q9Y4B4 1467 aa28.34■■■□□ 2.13
CTSB-215ENST00000528965 WDR97A6NE52 1622 aa28.34■■■□□ 2.13
CTSB-215ENST00000528965 CHD1O14646 1710 aa28.34■■■□□ 2.13
CTSB-215ENST00000528965 FGD5Q6ZNL6 1462 aa28.33■■■□□ 2.13
CTSB-215ENST00000528965 CUX1P39880 1505 aa28.28■■■□□ 2.12
CTSB-215ENST00000528965 FBLN2P98095 1184 aa28.27■■■□□ 2.12
CTSB-215ENST00000528965 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.12
CTSB-215ENST00000528965 SNAPC4Q5SXM2 1469 aa28.21■■■□□ 2.11
CTSB-215ENST00000528965 MAGI1Q96QZ7 1491 aaPredicted RBP28.18■■■□□ 2.1
CTSB-215ENST00000528965 SUPT5HO00267 1087 aaKnown RBP28.17■■■□□ 2.1
CTSB-215ENST00000528965 GRIN2BQ13224 1484 aa28.15■■■□□ 2.1
CTSB-215ENST00000528965 CYB5RLQ6IPT4 315 aa28.1■■■□□ 2.09
CTSB-215ENST00000528965 SYNJ1O43426 1573 aa28.09■■■□□ 2.09
CTSB-215ENST00000528965 CHMP7Q8WUX9 453 aaPredicted RBP28.09■■■□□ 2.09
CTSB-215ENST00000528965 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
CTSB-215ENST00000528965 SYNJ2O15056 1496 aa28.06■■■□□ 2.08
CTSB-215ENST00000528965 CLASP1Q7Z460 1538 aa28.04■■■□□ 2.08
CTSB-215ENST00000528965 GAPVD1Q14C86 1478 aa28.03■■■□□ 2.08
CTSB-215ENST00000528965 ABCA10Q8WWZ4 1543 aa28.02■■■□□ 2.08
CTSB-215ENST00000528965 PBRM1Q86U86 1689 aa28.02■■■□□ 2.08
CTSB-215ENST00000528965 ABCA5Q8WWZ7 1642 aa27.97■■■□□ 2.07
CTSB-215ENST00000528965 WRNQ14191 1432 aaPredicted RBP eCLIP27.93■■■□□ 2.06
CTSB-215ENST00000528965 TOP2BQ02880 1626 aa27.87■■■□□ 2.05
CTSB-215ENST00000528965 BIVM-ERCC5R4GMW8 1640 aa27.87■■■□□ 2.05
CTSB-215ENST00000528965 TRHP20396 242 aaPredicted RBP27.82■■■□□ 2.04
CTSB-215ENST00000528965 ADAMTS12P58397 1594 aa27.78■■■□□ 2.04
CTSB-215ENST00000528965 GRIN2AQ12879 1464 aa27.77■■■□□ 2.04
CTSB-215ENST00000528965 FHAD1B1AJZ9 1412 aa27.7■■■□□ 2.03
CTSB-215ENST00000528965 ERICH3Q5RHP9 1530 aa27.7■■■□□ 2.02
CTSB-215ENST00000528965 NUP160Q12769 1436 aa27.67■■■□□ 2.02
CTSB-215ENST00000528965 CEP170Q5SW79 1584 aa27.64■■■□□ 2.01
CTSB-215ENST00000528965 SHROOM2Q13796 1616 aa27.55■■■□□ 2
CTSB-215ENST00000528965 ERCC6L2Q5T890 1561 aa27.53■■■□□ 2
CTSB-215ENST00000528965 PRG4Q92954 1404 aaPredicted RBP27.4■■□□□ 1.98
CTSB-215ENST00000528965 RUSC2Q8N2Y8 1516 aa27.39■■□□□ 1.98
CTSB-215ENST00000528965 KIF27Q86VH2 1401 aa27.36■■□□□ 1.97
CTSB-215ENST00000528965 JPH4Q96JJ6 628 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms