RNA–Protein interactions for RNA: ENST00000528364.1

CLNS1A-210, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

APPRIS P1 TSL 3 BASIC

Gene CLNS1A, Length 953 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-210ENST00000528364 NISCHQ9Y2I1 1504 aa38.76■■■■□ 3.8
CLNS1A-210ENST00000528364 ABCC9O60706 1549 aa34.77■■■■□ 3.16
CLNS1A-210ENST00000528364 CCDC180Q9P1Z9 1646 aa34.62■■■■□ 3.13
CLNS1A-210ENST00000528364 RB1CC1Q8TDY2 1594 aa32.98■■■□□ 2.87
CLNS1A-210ENST00000528364 DCAF8L2P0C7V8 631 aa32.9■■■□□ 2.86
CLNS1A-210ENST00000528364 NACADO15069 1562 aa32.78■■■□□ 2.84
CLNS1A-210ENST00000528364 DNAJC5BQ9UF47 199 aa32.7■■■□□ 2.83
CLNS1A-210ENST00000528364 PABPN1Q86U42 306 aaKnown RBP eCLIP32.49■■■□□ 2.79
CLNS1A-210ENST00000528364 MYO15BQ96JP2 1530 aa32.3■■■□□ 2.76
CLNS1A-210ENST00000528364 UNC13AQ9UPW8 1703 aa32.26■■■□□ 2.76
CLNS1A-210ENST00000528364 ZCCHC6Q5VYS8 1495 aaKnown RBP32.1■■■□□ 2.73
CLNS1A-210ENST00000528364 BICRAQ9NZM4 1560 aa32.1■■■□□ 2.73
CLNS1A-210ENST00000528364 DCAF1Q9Y4B6 1507 aa31.93■■■□□ 2.7
CLNS1A-210ENST00000528364 SCRIBQ14160 1630 aa31.69■■■□□ 2.66
CLNS1A-210ENST00000528364 SHROOM4Q9ULL8 1493 aa31.49■■■□□ 2.63
CLNS1A-210ENST00000528364 CC2D2AQ9P2K1 1620 aa31.34■■■□□ 2.61
CLNS1A-210ENST00000528364 CECR2Q9BXF3 1484 aa31.27■■■□□ 2.6
CLNS1A-210ENST00000528364 EIF4G1Q04637 1599 aaKnown RBP31.26■■■□□ 2.6
CLNS1A-210ENST00000528364 NCAPD3P42695 1498 aa30.32■■■□□ 2.44
CLNS1A-210ENST00000528364 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
CLNS1A-210ENST00000528364 SMARCA4P51532 1647 aa30.19■■■□□ 2.42
CLNS1A-210ENST00000528364 SMARCA2P51531 1590 aa30.09■■■□□ 2.41
CLNS1A-210ENST00000528364 BAZ1AQ9NRL2 1556 aaPredicted RBP30.03■■■□□ 2.4
CLNS1A-210ENST00000528364 HMGXB3Q12766 1538 aa30.01■■■□□ 2.4
CLNS1A-210ENST00000528364 ERCC6Q03468 1493 aa29.95■■■□□ 2.39
CLNS1A-210ENST00000528364 BAZ1BQ9UIG0 1483 aaKnown RBP29.93■■■□□ 2.38
CLNS1A-210ENST00000528364 MROH2BQ7Z745 1585 aa29.92■■■□□ 2.38
CLNS1A-210ENST00000528364 NESP48681 1621 aa29.91■■■□□ 2.38
CLNS1A-210ENST00000528364 DNAJC5Q9H3Z4 198 aa29.88■■■□□ 2.37
CLNS1A-210ENST00000528364 PEG3Q9GZU2 1588 aa29.85■■■□□ 2.37
CLNS1A-210ENST00000528364 CUX2O14529 1486 aa29.81■■■□□ 2.36
CLNS1A-210ENST00000528364 WIZO95785 1651 aa29.55■■■□□ 2.32
CLNS1A-210ENST00000528364 LAMC3Q9Y6N6 1575 aa29.55■■■□□ 2.32
CLNS1A-210ENST00000528364 THOC2Q8NI27 1593 aaKnown RBP29.45■■■□□ 2.31
CLNS1A-210ENST00000528364 PDS5BQ9NTI5 1447 aa29.44■■■□□ 2.3
CLNS1A-210ENST00000528364 CADPSQ9ULU8 1353 aa29.43■■■□□ 2.3
CLNS1A-210ENST00000528364 KIF21AQ7Z4S6 1674 aa29.42■■■□□ 2.3
CLNS1A-210ENST00000528364 RSF1Q96T23 1441 aaPredicted RBP29.34■■■□□ 2.29
CLNS1A-210ENST00000528364 MRC2Q9UBG0 1479 aa29.17■■■□□ 2.26
CLNS1A-210ENST00000528364 TOP2AP11388 1531 aaKnown RBP29.11■■■□□ 2.25
CLNS1A-210ENST00000528364 CFTRP13569 1480 aa29.08■■■□□ 2.25
CLNS1A-210ENST00000528364 FANCD2Q9BXW9 1451 aa29.08■■■□□ 2.25
CLNS1A-210ENST00000528364 WDR62O43379 1518 aa29.07■■■□□ 2.24
CLNS1A-210ENST00000528364 CEP164Q9UPV0 1460 aa29.06■■■□□ 2.24
CLNS1A-210ENST00000528364 CCDC88BA6NC98 1476 aa28.88■■■□□ 2.21
CLNS1A-210ENST00000528364 URB2Q14146 1524 aaKnown RBP28.85■■■□□ 2.21
CLNS1A-210ENST00000528364 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
CLNS1A-210ENST00000528364 TRIM41Q8WV44 630 aa28.65■■■□□ 2.18
CLNS1A-210ENST00000528364 OSCARQ8IYS5 282 aa28.61■■■□□ 2.17
CLNS1A-210ENST00000528364 TOPBP1Q92547 1522 aa28.53■■■□□ 2.16
CLNS1A-210ENST00000528364 ZNF608Q9ULD9 1512 aaPredicted RBP28.53■■■□□ 2.16
CLNS1A-210ENST00000528364 IFT140Q96RY7 1462 aa28.49■■■□□ 2.15
CLNS1A-210ENST00000528364 ABCC8Q09428 1581 aa28.41■■■□□ 2.14
CLNS1A-210ENST00000528364 DNMBPQ6XZF7 1577 aa28.38■■■□□ 2.13
CLNS1A-210ENST00000528364 AQRO60306 1485 aaKnown RBP eCLIP28.3■■■□□ 2.127e-8■■■■□ 26.4
CLNS1A-210ENST00000528364 EIF4G3O43432 1585 aaKnown RBP28.25■■■□□ 2.11
CLNS1A-210ENST00000528364 POLA1P09884 1462 aaPredicted RBP28.25■■■□□ 2.11
CLNS1A-210ENST00000528364 TARBP1Q13395 1621 aaKnown RBP28.25■■■□□ 2.11
CLNS1A-210ENST00000528364 RAD54L2Q9Y4B4 1467 aa28.22■■■□□ 2.11
CLNS1A-210ENST00000528364 SUPT5HO00267 1087 aaKnown RBP28.22■■■□□ 2.11
CLNS1A-210ENST00000528364 SOGA1O94964 1423 aa28.17■■■□□ 2.1
CLNS1A-210ENST00000528364 TDRD9Q8NDG6 1382 aaKnown RBP28.15■■■□□ 2.1
CLNS1A-210ENST00000528364 FBLN2P98095 1184 aa28.14■■■□□ 2.1
CLNS1A-210ENST00000528364 RIMBP3CA6NJZ7 1639 aa28.14■■■□□ 2.09
CLNS1A-210ENST00000528364 RIMBP3BA6NNM3 1639 aa28.14■■■□□ 2.09
CLNS1A-210ENST00000528364 RIMBP3Q9UFD9 1639 aa28.14■■■□□ 2.09
CLNS1A-210ENST00000528364 FGD5Q6ZNL6 1462 aa28.09■■■□□ 2.09
CLNS1A-210ENST00000528364 CUX1P39880 1505 aa28.08■■■□□ 2.09
CLNS1A-210ENST00000528364 ARHGEF11O15085 1522 aa28.06■■■□□ 2.08
CLNS1A-210ENST00000528364 CHD1O14646 1710 aa28.06■■■□□ 2.08
CLNS1A-210ENST00000528364 CYB5RLQ6IPT4 315 aa27.99■■■□□ 2.07
CLNS1A-210ENST00000528364 SNAPC4Q5SXM2 1469 aa27.94■■■□□ 2.06
CLNS1A-210ENST00000528364 CHMP7Q8WUX9 453 aaPredicted RBP27.9■■■□□ 2.06
CLNS1A-210ENST00000528364 GRIN2BQ13224 1484 aa27.85■■■□□ 2.05
CLNS1A-210ENST00000528364 WDR97A6NE52 1622 aa27.83■■■□□ 2.05
CLNS1A-210ENST00000528364 ARAP1Q96P48 1450 aa27.81■■■□□ 2.04
CLNS1A-210ENST00000528364 MAGI1Q96QZ7 1491 aaPredicted RBP27.81■■■□□ 2.04
CLNS1A-210ENST00000528364 GAPVD1Q14C86 1478 aa27.79■■■□□ 2.04
CLNS1A-210ENST00000528364 ABCA10Q8WWZ4 1543 aa27.74■■■□□ 2.03
CLNS1A-210ENST00000528364 SYNJ2O15056 1496 aa27.74■■■□□ 2.03
CLNS1A-210ENST00000528364 CLASP1Q7Z460 1538 aa27.73■■■□□ 2.03
CLNS1A-210ENST00000528364 SYNJ1O43426 1573 aa27.69■■■□□ 2.02
CLNS1A-210ENST00000528364 PBRM1Q86U86 1689 aa27.69■■■□□ 2.02
CLNS1A-210ENST00000528364 WRNQ14191 1432 aaPredicted RBP eCLIP27.67■■■□□ 2.02
CLNS1A-210ENST00000528364 ABCA5Q8WWZ7 1642 aa27.66■■■□□ 2.02
CLNS1A-210ENST00000528364 TRHP20396 242 aaPredicted RBP27.63■■■□□ 2.01
CLNS1A-210ENST00000528364 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
CLNS1A-210ENST00000528364 BIVM-ERCC5R4GMW8 1640 aa27.57■■■□□ 2
CLNS1A-210ENST00000528364 GRIN2AQ12879 1464 aa27.49■■□□□ 1.99
CLNS1A-210ENST00000528364 ADAMTS12P58397 1594 aa27.45■■□□□ 1.99
CLNS1A-210ENST00000528364 FHAD1B1AJZ9 1412 aa27.42■■□□□ 1.98
CLNS1A-210ENST00000528364 NUP160Q12769 1436 aa27.41■■□□□ 1.98
CLNS1A-210ENST00000528364 CEP170Q5SW79 1584 aa27.4■■□□□ 1.98
CLNS1A-210ENST00000528364 ERCC6L2Q5T890 1561 aa27.4■■□□□ 1.98
CLNS1A-210ENST00000528364 ERICH3Q5RHP9 1530 aa27.36■■□□□ 1.97
CLNS1A-210ENST00000528364 JPH4Q96JJ6 628 aa27.23■■□□□ 1.95
CLNS1A-210ENST00000528364 SHROOM2Q13796 1616 aa27.23■■□□□ 1.95
CLNS1A-210ENST00000528364 PRG4Q92954 1404 aaPredicted RBP27.19■■□□□ 1.94
CLNS1A-210ENST00000528364 IGF1RP08069 1367 aa27.17■■□□□ 1.94
CLNS1A-210ENST00000528364 KIF27Q86VH2 1401 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms