RNA–Protein interactions for RNA: ENST00000527442.5

PKP3-205, Transcript of plakophilin 3, humanhuman

TSL 3

Gene PKP3, Length 847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-205ENST00000527442 DDX3XO00571 662 aaKnown RBP eCLIP21.95■■□□□ 1.13e-24■■■■■ 37.6
PKP3-205ENST00000527442 TROVE2P10155 538 aaKnown RBP eCLIP19.87■□□□□ 0.775e-10■■■□□ 18
PKP3-205ENST00000527442 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.5■■□□□ 1.674e-9■■■□□ 14.6
PKP3-205ENST00000527442 AATFQ9NY61 560 aaKnown RBP eCLIP25.3■■□□□ 1.648e-9■■■□□ 14.8
PKP3-205ENST00000527442 HNRNPKP61978 463 aaKnown RBP eCLIP21.03■□□□□ 0.961e-8■■■■□ 22.4
PKP3-205ENST00000527442 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.06■■□□□ 1.62e-8■■■■■ 56.1
PKP3-205ENST00000527442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.71■■■■□ 3.153e-8■□□□□ 9.7
PKP3-205ENST00000527442 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.29■□□□□ 0.522e-7■■■□□ 15.9
PKP3-205ENST00000527442 FMR1Q06787 632 aaKnown RBP eCLIP27.3■■□□□ 1.963e-7■□□□□ 10.6
PKP3-205ENST00000527442 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.96■■□□□ 1.115e-7■■■■□ 23.7
PKP3-205ENST00000527442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.61■■□□□ 1.537e-7■■■■□ 23
PKP3-205ENST00000527442 AGGF1Q8N302 714 aaeCLIP20.8■□□□□ 0.928e-7■■■■□ 20
PKP3-205ENST00000527442 SF3B1O75533 1304 aaKnown RBP eCLIP22.82■■□□□ 1.241e-6■■■■■ 135.5
PKP3-205ENST00000527442 FXR2P51116 673 aaKnown RBP eCLIP23.36■■□□□ 1.331e-6■□□□□ 9.4
PKP3-205ENST00000527442 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.59■□□□□ 0.731e-6■■■■□ 24.8
PKP3-205ENST00000527442 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.68■□□□□ 0.92e-6■■■■■ 45.7
PKP3-205ENST00000527442 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.17■■□□□ 1.142e-6■■■■■ 352.1
PKP3-205ENST00000527442 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.49■■□□□ 1.512e-6■■■■□ 20.8
PKP3-205ENST00000527442 NIPBLQ6KC79 2804 aaeCLIP19.3■□□□□ 0.682e-6■■■■□ 19.3
PKP3-205ENST00000527442 NCBP2P52298 156 aaKnown RBP eCLIP19.37■□□□□ 0.692e-6■□□□□ 8.3
PKP3-205ENST00000527442 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.22■□□□□ 0.512e-6■■■■□ 25.3
PKP3-205ENST00000527442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.01■■■□□ 2.882e-6■■■■■ 28.3
PKP3-205ENST00000527442 EFTUD2Q15029 972 aaKnown RBP eCLIP20.59■□□□□ 0.892e-6■■■■■ 39.1
PKP3-205ENST00000527442 AQRO60306 1485 aaKnown RBP eCLIP38.4■■■■□ 3.742e-6■■■■■ 27.4
PKP3-205ENST00000527442 RPS3P23396 243 aaKnown RBP eCLIP20.48■□□□□ 0.873e-6■□□□□ 10.1
PKP3-205ENST00000527442 NONOQ15233 471 aaKnown RBP eCLIP23.62■■□□□ 1.373e-6■■□□□ 12.2
PKP3-205ENST00000527442 RBM15Q96T37 977 aaKnown RBP eCLIP20.92■□□□□ 0.945e-6■■□□□ 11.5
PKP3-205ENST00000527442 SF3B4Q15427 424 aaKnown RBP eCLIP18.78■□□□□ 0.66e-6■□□□□ 11
PKP3-205ENST00000527442 EWSR1Q01844 656 aaKnown RBP eCLIP16.21■□□□□ 0.197e-6■■■□□ 16.7
PKP3-205ENST00000527442 METAP2P50579 478 aaKnown RBP eCLIP24.14■■□□□ 1.459e-6■□□□□ 8.1
PKP3-205ENST00000527442 SMNDC1O75940 238 aaKnown RBP eCLIP18.62■□□□□ 0.579e-6■■■■□ 21.6
Retrieved 31 of 31 RNA–protein pairs in 9.1 ms