RNA–Protein interactions for RNA: ENST00000527442.5

PKP3-205, Transcript of plakophilin 3, humanhuman

TSL 3

Gene PKP3, Length 847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-205ENST00000527442 NISCHQ9Y2I1 1504 aa52.37■■■■■ 5.97
PKP3-205ENST00000527442 ABCC9O60706 1549 aa47.58■■■■■ 5.21
PKP3-205ENST00000527442 CCDC180Q9P1Z9 1646 aa47.26■■■■■ 5.16
PKP3-205ENST00000527442 RB1CC1Q8TDY2 1594 aa45.11■■■■■ 4.81
PKP3-205ENST00000527442 DNAJC5BQ9UF47 199 aa44.94■■■■■ 4.78
PKP3-205ENST00000527442 NACADO15069 1562 aa44.69■■■■■ 4.74
PKP3-205ENST00000527442 DCAF8L2P0C7V8 631 aa44.25■■■■■ 4.67
PKP3-205ENST00000527442 UNC13AQ9UPW8 1703 aa44.24■■■■■ 4.67
PKP3-205ENST00000527442 PABPN1Q86U42 306 aaKnown RBP eCLIP44.15■■■■■ 4.66
PKP3-205ENST00000527442 MYO15BQ96JP2 1530 aa43.92■■■■■ 4.62
PKP3-205ENST00000527442 BICRAQ9NZM4 1560 aa43.88■■■■■ 4.61
PKP3-205ENST00000527442 ZCCHC6Q5VYS8 1495 aaKnown RBP43.35■■■■■ 4.53
PKP3-205ENST00000527442 DCAF1Q9Y4B6 1507 aa43.22■■■■■ 4.51
PKP3-205ENST00000527442 SHROOM4Q9ULL8 1493 aa43.16■■■■■ 4.5
PKP3-205ENST00000527442 SCRIBQ14160 1630 aa43.02■■■■■ 4.48
PKP3-205ENST00000527442 CC2D2AQ9P2K1 1620 aa42.99■■■■■ 4.47
PKP3-205ENST00000527442 CECR2Q9BXF3 1484 aa42.87■■■■■ 4.45
PKP3-205ENST00000527442 EIF4G1Q04637 1599 aaKnown RBP42.79■■■■■ 4.44
PKP3-205ENST00000527442 DNAJC5Q9H3Z4 198 aa41.51■■■■■ 4.24
PKP3-205ENST00000527442 NCAPD3P42695 1498 aa41.22■■■■■ 4.19
PKP3-205ENST00000527442 CUX2O14529 1486 aa41.14■■■■■ 4.18
PKP3-205ENST00000527442 ERCC6Q03468 1493 aa41.07■■■■■ 4.16
PKP3-205ENST00000527442 ATAD2BQ9ULI0 1458 aa41.07■■■■■ 4.16
PKP3-205ENST00000527442 SMARCA4P51532 1647 aa41■■■■■ 4.15
PKP3-205ENST00000527442 HMGXB3Q12766 1538 aa40.95■■■■■ 4.15
PKP3-205ENST00000527442 SMARCA2P51531 1590 aa40.94■■■■■ 4.14
PKP3-205ENST00000527442 NESP48681 1621 aa40.78■■■■■ 4.12
PKP3-205ENST00000527442 BAZ1AQ9NRL2 1556 aaPredicted RBP40.69■■■■■ 4.1
PKP3-205ENST00000527442 BAZ1BQ9UIG0 1483 aaKnown RBP40.65■■■■■ 4.1
PKP3-205ENST00000527442 PEG3Q9GZU2 1588 aa40.58■■■■■ 4.09
PKP3-205ENST00000527442 THOC2Q8NI27 1593 aaKnown RBP40.51■■■■■ 4.08
PKP3-205ENST00000527442 LAMC3Q9Y6N6 1575 aa40.42■■■■■ 4.06
PKP3-205ENST00000527442 MROH2BQ7Z745 1585 aa40.38■■■■■ 4.05
PKP3-205ENST00000527442 KIF21AQ7Z4S6 1674 aa40.32■■■■■ 4.05
PKP3-205ENST00000527442 PDS5BQ9NTI5 1447 aa40.11■■■■■ 4.01
PKP3-205ENST00000527442 CADPSQ9ULU8 1353 aa39.93■■■■□ 3.98
PKP3-205ENST00000527442 WIZO95785 1651 aa39.92■■■■□ 3.98
PKP3-205ENST00000527442 MRC2Q9UBG0 1479 aa39.86■■■■□ 3.97
PKP3-205ENST00000527442 WDR62O43379 1518 aa39.81■■■■□ 3.96
PKP3-205ENST00000527442 CEP164Q9UPV0 1460 aa39.62■■■■□ 3.93
PKP3-205ENST00000527442 TRIM41Q8WV44 630 aa39.54■■■■□ 3.92
PKP3-205ENST00000527442 FANCD2Q9BXW9 1451 aa39.53■■■■□ 3.92
PKP3-205ENST00000527442 CFTRP13569 1480 aa39.43■■■■□ 3.9
PKP3-205ENST00000527442 TOP2AP11388 1531 aaKnown RBP39.35■■■■□ 3.89
PKP3-205ENST00000527442 RSF1Q96T23 1441 aaPredicted RBP39.34■■■■□ 3.89
PKP3-205ENST00000527442 URB2Q14146 1524 aaKnown RBP39.27■■■■□ 3.88
PKP3-205ENST00000527442 PRDM2Q13029 1718 aa39.17■■■■□ 3.86
PKP3-205ENST00000527442 OSCARQ8IYS5 282 aa39.09■■■■□ 3.85
PKP3-205ENST00000527442 CCDC88BA6NC98 1476 aa38.86■■■■□ 3.81
PKP3-205ENST00000527442 ZNF608Q9ULD9 1512 aaPredicted RBP38.84■■■■□ 3.81
PKP3-205ENST00000527442 RIMBP3CA6NJZ7 1639 aa38.81■■■■□ 3.8
PKP3-205ENST00000527442 RIMBP3BA6NNM3 1639 aa38.81■■■■□ 3.8
PKP3-205ENST00000527442 RIMBP3Q9UFD9 1639 aa38.81■■■■□ 3.8
PKP3-205ENST00000527442 IFT140Q96RY7 1462 aa38.81■■■■□ 3.8
PKP3-205ENST00000527442 TOPBP1Q92547 1522 aa38.76■■■■□ 3.8
PKP3-205ENST00000527442 EIF4G3O43432 1585 aaKnown RBP38.67■■■■□ 3.78
PKP3-205ENST00000527442 ARHGEF11O15085 1522 aa38.61■■■■□ 3.77
PKP3-205ENST00000527442 DNMBPQ6XZF7 1577 aa38.6■■■■□ 3.77
PKP3-205ENST00000527442 ABCC8Q09428 1581 aa38.58■■■■□ 3.77
PKP3-205ENST00000527442 CHD1O14646 1710 aa38.49■■■■□ 3.75
PKP3-205ENST00000527442 TARBP1Q13395 1621 aaKnown RBP38.49■■■■□ 3.75
PKP3-205ENST00000527442 AQRO60306 1485 aaKnown RBP eCLIP38.4■■■■□ 3.742e-6■■■■■ 27.4
PKP3-205ENST00000527442 POLA1P09884 1462 aaPredicted RBP38.34■■■■□ 3.73
PKP3-205ENST00000527442 CYB5RLQ6IPT4 315 aa38.23■■■■□ 3.71
PKP3-205ENST00000527442 ARAP1Q96P48 1450 aa38.22■■■■□ 3.71
PKP3-205ENST00000527442 RAD54L2Q9Y4B4 1467 aa38.2■■■■□ 3.71
PKP3-205ENST00000527442 FBLN2P98095 1184 aa38.15■■■■□ 3.7
PKP3-205ENST00000527442 SOGA1O94964 1423 aa38.09■■■■□ 3.69
PKP3-205ENST00000527442 TDRD9Q8NDG6 1382 aaKnown RBP38.08■■■■□ 3.69
PKP3-205ENST00000527442 FGD5Q6ZNL6 1462 aa38.04■■■■□ 3.68
PKP3-205ENST00000527442 SNAPC4Q5SXM2 1469 aa38.03■■■■□ 3.68
PKP3-205ENST00000527442 WDR97A6NE52 1622 aa38.03■■■■□ 3.68
PKP3-205ENST00000527442 CLASP1Q7Z460 1538 aa37.98■■■■□ 3.67
PKP3-205ENST00000527442 CUX1P39880 1505 aa37.97■■■■□ 3.67
PKP3-205ENST00000527442 TRHP20396 242 aaPredicted RBP37.93■■■■□ 3.66
PKP3-205ENST00000527442 MAGI1Q96QZ7 1491 aaPredicted RBP37.89■■■■□ 3.66
PKP3-205ENST00000527442 SYNJ1O43426 1573 aa37.88■■■■□ 3.65
PKP3-205ENST00000527442 GRIN2BQ13224 1484 aa37.84■■■■□ 3.65
PKP3-205ENST00000527442 CHMP7Q8WUX9 453 aaPredicted RBP37.8■■■■□ 3.64
PKP3-205ENST00000527442 PBRM1Q86U86 1689 aa37.79■■■■□ 3.64
PKP3-205ENST00000527442 SYNJ2O15056 1496 aa37.77■■■■□ 3.64
PKP3-205ENST00000527442 GAPVD1Q14C86 1478 aa37.64■■■■□ 3.62
PKP3-205ENST00000527442 ABCA5Q8WWZ7 1642 aa37.62■■■■□ 3.61
PKP3-205ENST00000527442 ABCA10Q8WWZ4 1543 aa37.56■■■■□ 3.6
PKP3-205ENST00000527442 ERCC6L2Q5T890 1561 aa37.38■■■■□ 3.58
PKP3-205ENST00000527442 GRIN2AQ12879 1464 aa37.38■■■■□ 3.57
PKP3-205ENST00000527442 ADAMTS12P58397 1594 aa37.37■■■■□ 3.57
PKP3-205ENST00000527442 CEP170Q5SW79 1584 aa37.31■■■■□ 3.56
PKP3-205ENST00000527442 BIVM-ERCC5R4GMW8 1640 aa37.29■■■■□ 3.56
PKP3-205ENST00000527442 WRNQ14191 1432 aaPredicted RBP eCLIP37.28■■■■□ 3.56
PKP3-205ENST00000527442 NUP160Q12769 1436 aa37.26■■■■□ 3.55
PKP3-205ENST00000527442 TOP2BQ02880 1626 aa37.25■■■■□ 3.55
PKP3-205ENST00000527442 SUPT5HO00267 1087 aaKnown RBP37.24■■■■□ 3.55
PKP3-205ENST00000527442 SHROOM2Q13796 1616 aa37.21■■■■□ 3.55
PKP3-205ENST00000527442 FHAD1B1AJZ9 1412 aa37.14■■■■□ 3.54
PKP3-205ENST00000527442 ERICH3Q5RHP9 1530 aa37.1■■■■□ 3.53
PKP3-205ENST00000527442 AEBP2Q6ZN18 517 aaPredicted RBP37.09■■■■□ 3.53
PKP3-205ENST00000527442 KIF13AQ9H1H9 1805 aa36.98■■■■□ 3.51
PKP3-205ENST00000527442 PRG4Q92954 1404 aaPredicted RBP36.9■■■■□ 3.5
PKP3-205ENST00000527442 RUSC2Q8N2Y8 1516 aa36.86■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms