RNA–Protein interactions for RNA: ENST00000526066.5

CCS-204, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 872 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-204ENST00000526066 NISCHQ9Y2I1 1504 aa42.03■■■■■ 4.32
CCS-204ENST00000526066 ABCC9O60706 1549 aa38.12■■■■□ 3.69
CCS-204ENST00000526066 CCDC180Q9P1Z9 1646 aa37.92■■■■□ 3.66
CCS-204ENST00000526066 RB1CC1Q8TDY2 1594 aa36.24■■■■□ 3.39
CCS-204ENST00000526066 DNAJC5BQ9UF47 199 aa36.01■■■■□ 3.36
CCS-204ENST00000526066 NACADO15069 1562 aa35.89■■■■□ 3.34
CCS-204ENST00000526066 DCAF8L2P0C7V8 631 aa35.68■■■■□ 3.3
CCS-204ENST00000526066 PABPN1Q86U42 306 aaKnown RBP eCLIP35.42■■■■□ 3.26
CCS-204ENST00000526066 UNC13AQ9UPW8 1703 aa35.35■■■■□ 3.25
CCS-204ENST00000526066 MYO15BQ96JP2 1530 aa35.27■■■■□ 3.24
CCS-204ENST00000526066 BICRAQ9NZM4 1560 aa35.05■■■■□ 3.2
CCS-204ENST00000526066 ZCCHC6Q5VYS8 1495 aaKnown RBP34.77■■■■□ 3.16
CCS-204ENST00000526066 DCAF1Q9Y4B6 1507 aa34.71■■■■□ 3.15
CCS-204ENST00000526066 SHROOM4Q9ULL8 1493 aa34.7■■■■□ 3.15
CCS-204ENST00000526066 SCRIBQ14160 1630 aa34.51■■■■□ 3.11
CCS-204ENST00000526066 CC2D2AQ9P2K1 1620 aa34.43■■■■□ 3.1
CCS-204ENST00000526066 CECR2Q9BXF3 1484 aa34.39■■■■□ 3.1
CCS-204ENST00000526066 EIF4G1Q04637 1599 aaKnown RBP34.29■■■■□ 3.08
CCS-204ENST00000526066 DNAJC5Q9H3Z4 198 aa33.58■■■□□ 2.97
CCS-204ENST00000526066 NCAPD3P42695 1498 aa33.07■■■□□ 2.88
CCS-204ENST00000526066 ERCC6Q03468 1493 aa33.05■■■□□ 2.88
CCS-204ENST00000526066 CUX2O14529 1486 aa33.02■■■□□ 2.88
CCS-204ENST00000526066 ATAD2BQ9ULI0 1458 aa32.93■■■□□ 2.86
CCS-204ENST00000526066 SMARCA2P51531 1590 aa32.92■■■□□ 2.86
CCS-204ENST00000526066 SMARCA4P51532 1647 aa32.88■■■□□ 2.85
CCS-204ENST00000526066 HMGXB3Q12766 1538 aa32.86■■■□□ 2.85
CCS-204ENST00000526066 BAZ1AQ9NRL2 1556 aaPredicted RBP32.71■■■□□ 2.83
CCS-204ENST00000526066 BAZ1BQ9UIG0 1483 aaKnown RBP32.68■■■□□ 2.82
CCS-204ENST00000526066 NESP48681 1621 aa32.62■■■□□ 2.81
CCS-204ENST00000526066 PEG3Q9GZU2 1588 aa32.53■■■□□ 2.8
CCS-204ENST00000526066 LAMC3Q9Y6N6 1575 aa32.45■■■□□ 2.79
CCS-204ENST00000526066 THOC2Q8NI27 1593 aaKnown RBP32.39■■■□□ 2.78
CCS-204ENST00000526066 MROH2BQ7Z745 1585 aa32.35■■■□□ 2.77
CCS-204ENST00000526066 PDS5BQ9NTI5 1447 aa32.28■■■□□ 2.76
CCS-204ENST00000526066 KIF21AQ7Z4S6 1674 aa32.27■■■□□ 2.76
CCS-204ENST00000526066 CADPSQ9ULU8 1353 aa32.07■■■□□ 2.73
CCS-204ENST00000526066 MRC2Q9UBG0 1479 aa32■■■□□ 2.71
CCS-204ENST00000526066 WIZO95785 1651 aa31.99■■■□□ 2.71
CCS-204ENST00000526066 WDR62O43379 1518 aa31.9■■■□□ 2.7
CCS-204ENST00000526066 CEP164Q9UPV0 1460 aa31.84■■■□□ 2.69
CCS-204ENST00000526066 TRIM41Q8WV44 630 aa31.84■■■□□ 2.69
CCS-204ENST00000526066 FANCD2Q9BXW9 1451 aa31.74■■■□□ 2.67
CCS-204ENST00000526066 CFTRP13569 1480 aa31.65■■■□□ 2.66
CCS-204ENST00000526066 TOP2AP11388 1531 aaKnown RBP31.59■■■□□ 2.65
CCS-204ENST00000526066 RSF1Q96T23 1441 aaPredicted RBP31.58■■■□□ 2.65
CCS-204ENST00000526066 OSCARQ8IYS5 282 aa31.46■■■□□ 2.63
CCS-204ENST00000526066 URB2Q14146 1524 aaKnown RBP31.44■■■□□ 2.62
CCS-204ENST00000526066 PRDM2Q13029 1718 aa31.41■■■□□ 2.62
CCS-204ENST00000526066 IFT140Q96RY7 1462 aa31.2■■■□□ 2.58
CCS-204ENST00000526066 CCDC88BA6NC98 1476 aa31.18■■■□□ 2.58
CCS-204ENST00000526066 TOPBP1Q92547 1522 aa31.09■■■□□ 2.57
CCS-204ENST00000526066 ZNF608Q9ULD9 1512 aaPredicted RBP31.09■■■□□ 2.57
CCS-204ENST00000526066 ABCC8Q09428 1581 aa31.09■■■□□ 2.57
CCS-204ENST00000526066 RIMBP3CA6NJZ7 1639 aa31.06■■■□□ 2.56
CCS-204ENST00000526066 RIMBP3BA6NNM3 1639 aa31.06■■■□□ 2.56
CCS-204ENST00000526066 RIMBP3Q9UFD9 1639 aa31.06■■■□□ 2.56
CCS-204ENST00000526066 EIF4G3O43432 1585 aaKnown RBP30.99■■■□□ 2.55
CCS-204ENST00000526066 DNMBPQ6XZF7 1577 aa30.99■■■□□ 2.55
CCS-204ENST00000526066 ARHGEF11O15085 1522 aa30.93■■■□□ 2.54
CCS-204ENST00000526066 CHD1O14646 1710 aa30.82■■■□□ 2.52
CCS-204ENST00000526066 TARBP1Q13395 1621 aaKnown RBP30.82■■■□□ 2.52
CCS-204ENST00000526066 AQRO60306 1485 aaKnown RBP eCLIP30.8■■■□□ 2.522e-16■■■■■ 51.5
CCS-204ENST00000526066 FBLN2P98095 1184 aa30.76■■■□□ 2.51
CCS-204ENST00000526066 POLA1P09884 1462 aaPredicted RBP30.75■■■□□ 2.51
CCS-204ENST00000526066 SUPT5HO00267 1087 aaKnown RBP30.74■■■□□ 2.51
CCS-204ENST00000526066 CYB5RLQ6IPT4 315 aa30.73■■■□□ 2.51
CCS-204ENST00000526066 SOGA1O94964 1423 aa30.63■■■□□ 2.49
CCS-204ENST00000526066 RAD54L2Q9Y4B4 1467 aa30.62■■■□□ 2.49
CCS-204ENST00000526066 WDR97A6NE52 1622 aa30.58■■■□□ 2.49
CCS-204ENST00000526066 TDRD9Q8NDG6 1382 aaKnown RBP30.58■■■□□ 2.49
CCS-204ENST00000526066 ARAP1Q96P48 1450 aa30.57■■■□□ 2.48
CCS-204ENST00000526066 TRHP20396 242 aaPredicted RBP30.56■■■□□ 2.48
CCS-204ENST00000526066 FGD5Q6ZNL6 1462 aa30.54■■■□□ 2.48
CCS-204ENST00000526066 SNAPC4Q5SXM2 1469 aa30.51■■■□□ 2.48
CCS-204ENST00000526066 CHMP7Q8WUX9 453 aaPredicted RBP30.48■■■□□ 2.47
CCS-204ENST00000526066 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
CCS-204ENST00000526066 MAGI1Q96QZ7 1491 aaPredicted RBP30.46■■■□□ 2.47
CCS-204ENST00000526066 CUX1P39880 1505 aa30.42■■■□□ 2.46
CCS-204ENST00000526066 GRIN2BQ13224 1484 aa30.42■■■□□ 2.46
CCS-204ENST00000526066 CLASP1Q7Z460 1538 aa30.4■■■□□ 2.46
CCS-204ENST00000526066 SYNJ2O15056 1496 aa30.35■■■□□ 2.45
CCS-204ENST00000526066 PBRM1Q86U86 1689 aa30.3■■■□□ 2.44
CCS-204ENST00000526066 GAPVD1Q14C86 1478 aa30.26■■■□□ 2.44
CCS-204ENST00000526066 ABCA10Q8WWZ4 1543 aa30.17■■■□□ 2.42
CCS-204ENST00000526066 ABCA5Q8WWZ7 1642 aa30.15■■■□□ 2.42
CCS-204ENST00000526066 AEBP2Q6ZN18 517 aaPredicted RBP30.1■■■□□ 2.41
CCS-204ENST00000526066 WRNQ14191 1432 aaPredicted RBP eCLIP30.05■■■□□ 2.4
CCS-204ENST00000526066 GRIN2AQ12879 1464 aa30.01■■■□□ 2.4
CCS-204ENST00000526066 ADAMTS12P58397 1594 aa29.96■■■□□ 2.39
CCS-204ENST00000526066 BIVM-ERCC5R4GMW8 1640 aa29.92■■■□□ 2.38
CCS-204ENST00000526066 TOP2BQ02880 1626 aa29.91■■■□□ 2.38
CCS-204ENST00000526066 CEP170Q5SW79 1584 aa29.89■■■□□ 2.38
CCS-204ENST00000526066 FHAD1B1AJZ9 1412 aa29.88■■■□□ 2.37
CCS-204ENST00000526066 NUP160Q12769 1436 aa29.88■■■□□ 2.37
CCS-204ENST00000526066 ERCC6L2Q5T890 1561 aa29.86■■■□□ 2.37
CCS-204ENST00000526066 ERICH3Q5RHP9 1530 aa29.81■■■□□ 2.36
CCS-204ENST00000526066 SHROOM2Q13796 1616 aa29.8■■■□□ 2.36
CCS-204ENST00000526066 PRG4Q92954 1404 aaPredicted RBP29.66■■■□□ 2.34
CCS-204ENST00000526066 JPH4Q96JJ6 628 aa29.59■■■□□ 2.33
CCS-204ENST00000526066 KIF13AQ9H1H9 1805 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms