RNA–Protein interactions for RNA: ENST00000526058.1

CCS-203, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 4

Gene CCS, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-203ENST00000526058 NISCHQ9Y2I1 1504 aa41.78■■■■■ 4.28
CCS-203ENST00000526058 CCDC180Q9P1Z9 1646 aa37.23■■■■□ 3.55
CCS-203ENST00000526058 ABCC9O60706 1549 aa36.75■■■■□ 3.47
CCS-203ENST00000526058 RB1CC1Q8TDY2 1594 aa35.17■■■■□ 3.22
CCS-203ENST00000526058 DCAF8L2P0C7V8 631 aa35.08■■■■□ 3.21
CCS-203ENST00000526058 NACADO15069 1562 aa35.06■■■■□ 3.2
CCS-203ENST00000526058 ZCCHC6Q5VYS8 1495 aaKnown RBP34.74■■■■□ 3.15
CCS-203ENST00000526058 MYO15BQ96JP2 1530 aa34.74■■■■□ 3.15
CCS-203ENST00000526058 DCAF1Q9Y4B6 1507 aa34.5■■■■□ 3.11
CCS-203ENST00000526058 UNC13AQ9UPW8 1703 aa34.47■■■■□ 3.11
CCS-203ENST00000526058 PABPN1Q86U42 306 aaKnown RBP eCLIP34.32■■■■□ 3.08
CCS-203ENST00000526058 BICRAQ9NZM4 1560 aa34.17■■■■□ 3.06
CCS-203ENST00000526058 DNAJC5BQ9UF47 199 aa34.02■■■■□ 3.04
CCS-203ENST00000526058 SCRIBQ14160 1630 aa34.01■■■■□ 3.04
CCS-203ENST00000526058 SHROOM4Q9ULL8 1493 aa33.67■■■□□ 2.98
CCS-203ENST00000526058 EIF4G1Q04637 1599 aaKnown RBP33.27■■■□□ 2.92
CCS-203ENST00000526058 CC2D2AQ9P2K1 1620 aa33.22■■■□□ 2.91
CCS-203ENST00000526058 CECR2Q9BXF3 1484 aa33.02■■■□□ 2.88
CCS-203ENST00000526058 SMARCA4P51532 1647 aa32.48■■■□□ 2.79
CCS-203ENST00000526058 BAZ1AQ9NRL2 1556 aaPredicted RBP32.37■■■□□ 2.77
CCS-203ENST00000526058 NCAPD3P42695 1498 aa32.37■■■□□ 2.77
CCS-203ENST00000526058 ATAD2BQ9ULI0 1458 aa32.37■■■□□ 2.77
CCS-203ENST00000526058 SMARCA2P51531 1590 aa32.28■■■□□ 2.76
CCS-203ENST00000526058 MROH2BQ7Z745 1585 aa32.23■■■□□ 2.75
CCS-203ENST00000526058 HMGXB3Q12766 1538 aa32.17■■■□□ 2.74
CCS-203ENST00000526058 PEG3Q9GZU2 1588 aa32.15■■■□□ 2.74
CCS-203ENST00000526058 BAZ1BQ9UIG0 1483 aaKnown RBP32.08■■■□□ 2.73
CCS-203ENST00000526058 WIZO95785 1651 aa31.88■■■□□ 2.69
CCS-203ENST00000526058 RSF1Q96T23 1441 aaPredicted RBP31.75■■■□□ 2.67
CCS-203ENST00000526058 NESP48681 1621 aa31.74■■■□□ 2.67
CCS-203ENST00000526058 ERCC6Q03468 1493 aa31.65■■■□□ 2.66
CCS-203ENST00000526058 LAMC3Q9Y6N6 1575 aa31.56■■■□□ 2.64
CCS-203ENST00000526058 TOP2AP11388 1531 aaKnown RBP31.47■■■□□ 2.63
CCS-203ENST00000526058 CADPSQ9ULU8 1353 aa31.43■■■□□ 2.62
CCS-203ENST00000526058 CUX2O14529 1486 aa31.39■■■□□ 2.62
CCS-203ENST00000526058 KIF21AQ7Z4S6 1674 aa31.36■■■□□ 2.61
CCS-203ENST00000526058 PDS5BQ9NTI5 1447 aa31.34■■■□□ 2.61
CCS-203ENST00000526058 THOC2Q8NI27 1593 aaKnown RBP31.28■■■□□ 2.6
CCS-203ENST00000526058 CFTRP13569 1480 aa31.18■■■□□ 2.58
CCS-203ENST00000526058 CCDC88BA6NC98 1476 aa31.14■■■□□ 2.58
CCS-203ENST00000526058 FANCD2Q9BXW9 1451 aa31.07■■■□□ 2.56
CCS-203ENST00000526058 MRC2Q9UBG0 1479 aa31.05■■■□□ 2.56
CCS-203ENST00000526058 CEP164Q9UPV0 1460 aa31.04■■■□□ 2.56
CCS-203ENST00000526058 WDR62O43379 1518 aa30.97■■■□□ 2.55
CCS-203ENST00000526058 PRDM2Q13029 1718 aa30.94■■■□□ 2.54
CCS-203ENST00000526058 URB2Q14146 1524 aaKnown RBP30.8■■■□□ 2.52
CCS-203ENST00000526058 SUPT5HO00267 1087 aaKnown RBP30.79■■■□□ 2.52
CCS-203ENST00000526058 DNAJC5Q9H3Z4 198 aa30.77■■■□□ 2.52
CCS-203ENST00000526058 TOPBP1Q92547 1522 aa30.55■■■□□ 2.48
CCS-203ENST00000526058 ABCC8Q09428 1581 aa30.48■■■□□ 2.47
CCS-203ENST00000526058 DNMBPQ6XZF7 1577 aa30.48■■■□□ 2.47
CCS-203ENST00000526058 IFT140Q96RY7 1462 aa30.4■■■□□ 2.46
CCS-203ENST00000526058 ZNF608Q9ULD9 1512 aaPredicted RBP30.33■■■□□ 2.45
CCS-203ENST00000526058 POLA1P09884 1462 aaPredicted RBP30.27■■■□□ 2.44
CCS-203ENST00000526058 TARBP1Q13395 1621 aaKnown RBP30.25■■■□□ 2.43
CCS-203ENST00000526058 CUX1P39880 1505 aa30.23■■■□□ 2.43
CCS-203ENST00000526058 RAD54L2Q9Y4B4 1467 aa30.19■■■□□ 2.42
CCS-203ENST00000526058 EIF4G3O43432 1585 aaKnown RBP30.18■■■□□ 2.42
CCS-203ENST00000526058 FGD5Q6ZNL6 1462 aa30.17■■■□□ 2.42
CCS-203ENST00000526058 SOGA1O94964 1423 aa30.14■■■□□ 2.42
CCS-203ENST00000526058 AQRO60306 1485 aaKnown RBP eCLIP30.13■■■□□ 2.414e-16■■■■■ 45.1
CCS-203ENST00000526058 OSCARQ8IYS5 282 aa30.07■■■□□ 2.4
CCS-203ENST00000526058 TDRD9Q8NDG6 1382 aaKnown RBP30.03■■■□□ 2.4
CCS-203ENST00000526058 WDR97A6NE52 1622 aa29.93■■■□□ 2.38
CCS-203ENST00000526058 WRNQ14191 1432 aaPredicted RBP eCLIP29.92■■■□□ 2.38
CCS-203ENST00000526058 SYNJ1O43426 1573 aa29.9■■■□□ 2.38
CCS-203ENST00000526058 BIVM-ERCC5R4GMW8 1640 aa29.89■■■□□ 2.38
CCS-203ENST00000526058 TOP2BQ02880 1626 aa29.89■■■□□ 2.37
CCS-203ENST00000526058 CHD1O14646 1710 aa29.88■■■□□ 2.37
CCS-203ENST00000526058 ABCA10Q8WWZ4 1543 aa29.84■■■□□ 2.37
CCS-203ENST00000526058 FBLN2P98095 1184 aa29.83■■■□□ 2.37
CCS-203ENST00000526058 SNAPC4Q5SXM2 1469 aa29.82■■■□□ 2.36
CCS-203ENST00000526058 GRIN2BQ13224 1484 aa29.8■■■□□ 2.36
CCS-203ENST00000526058 GAPVD1Q14C86 1478 aa29.79■■■□□ 2.36
CCS-203ENST00000526058 PBRM1Q86U86 1689 aa29.76■■■□□ 2.36
CCS-203ENST00000526058 ABCA5Q8WWZ7 1642 aa29.76■■■□□ 2.35
CCS-203ENST00000526058 MAGI1Q96QZ7 1491 aaPredicted RBP29.74■■■□□ 2.35
CCS-203ENST00000526058 TRIM41Q8WV44 630 aa29.69■■■□□ 2.34
CCS-203ENST00000526058 CHMP7Q8WUX9 453 aaPredicted RBP29.67■■■□□ 2.34
CCS-203ENST00000526058 RIMBP3CA6NJZ7 1639 aa29.64■■■□□ 2.34
CCS-203ENST00000526058 RIMBP3BA6NNM3 1639 aa29.64■■■□□ 2.34
CCS-203ENST00000526058 RIMBP3Q9UFD9 1639 aa29.64■■■□□ 2.34
CCS-203ENST00000526058 SYNJ2O15056 1496 aa29.64■■■□□ 2.34
CCS-203ENST00000526058 ARHGEF11O15085 1522 aa29.6■■■□□ 2.33
CCS-203ENST00000526058 CLASP1Q7Z460 1538 aa29.51■■■□□ 2.32
CCS-203ENST00000526058 ADAMTS12P58397 1594 aa29.49■■■□□ 2.31
CCS-203ENST00000526058 ERICH3Q5RHP9 1530 aa29.47■■■□□ 2.31
CCS-203ENST00000526058 GRIN2AQ12879 1464 aa29.43■■■□□ 2.3
CCS-203ENST00000526058 FHAD1B1AJZ9 1412 aa29.42■■■□□ 2.3
CCS-203ENST00000526058 CYB5RLQ6IPT4 315 aa29.37■■■□□ 2.29
CCS-203ENST00000526058 ARAP1Q96P48 1450 aa29.34■■■□□ 2.29
CCS-203ENST00000526058 CEP170Q5SW79 1584 aa29.32■■■□□ 2.28
CCS-203ENST00000526058 NUP160Q12769 1436 aa29.3■■■□□ 2.28
CCS-203ENST00000526058 KIF27Q86VH2 1401 aa29.3■■■□□ 2.28
CCS-203ENST00000526058 IGF1RP08069 1367 aa29.26■■■□□ 2.27
CCS-203ENST00000526058 CUL7Q14999 1698 aa29.15■■■□□ 2.26
CCS-203ENST00000526058 ERCC6L2Q5T890 1561 aa29.14■■■□□ 2.26
CCS-203ENST00000526058 SHROOM2Q13796 1616 aa29.12■■■□□ 2.25
CCS-203ENST00000526058 RUSC2Q8N2Y8 1516 aa29.06■■■□□ 2.24
CCS-203ENST00000526058 CARMIL1Q5VZK9 1371 aa29.06■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms