RNA–Protein interactions for RNA: ENST00000525441.5

NR1H3-228, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 2

Gene NR1H3, Length 610 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-228ENST00000525441 NISCHQ9Y2I1 1504 aa42.81■■■■■ 4.44
NR1H3-228ENST00000525441 CCDC180Q9P1Z9 1646 aa38.16■■■■□ 3.7
NR1H3-228ENST00000525441 ABCC9O60706 1549 aa37.56■■■■□ 3.6
NR1H3-228ENST00000525441 RB1CC1Q8TDY2 1594 aa36.06■■■■□ 3.36
NR1H3-228ENST00000525441 NACADO15069 1562 aa35.97■■■■□ 3.35
NR1H3-228ENST00000525441 DCAF8L2P0C7V8 631 aa35.92■■■■□ 3.34
NR1H3-228ENST00000525441 MYO15BQ96JP2 1530 aa35.68■■■■□ 3.3
NR1H3-228ENST00000525441 ZCCHC6Q5VYS8 1495 aaKnown RBP35.61■■■■□ 3.29
NR1H3-228ENST00000525441 DCAF1Q9Y4B6 1507 aa35.43■■■■□ 3.26
NR1H3-228ENST00000525441 UNC13AQ9UPW8 1703 aa35.12■■■■□ 3.21
NR1H3-228ENST00000525441 PABPN1Q86U42 306 aaKnown RBP eCLIP35.07■■■■□ 3.2
NR1H3-228ENST00000525441 BICRAQ9NZM4 1560 aa34.91■■■■□ 3.18
NR1H3-228ENST00000525441 SCRIBQ14160 1630 aa34.79■■■■□ 3.16
NR1H3-228ENST00000525441 DNAJC5BQ9UF47 199 aa34.65■■■■□ 3.14
NR1H3-228ENST00000525441 SHROOM4Q9ULL8 1493 aa34.62■■■■□ 3.13
NR1H3-228ENST00000525441 EIF4G1Q04637 1599 aaKnown RBP34.04■■■■□ 3.04
NR1H3-228ENST00000525441 CC2D2AQ9P2K1 1620 aa33.95■■■■□ 3.03
NR1H3-228ENST00000525441 CECR2Q9BXF3 1484 aa33.8■■■■□ 3
NR1H3-228ENST00000525441 SMARCA4P51532 1647 aa33.25■■■□□ 2.91
NR1H3-228ENST00000525441 BAZ1AQ9NRL2 1556 aaPredicted RBP33.22■■■□□ 2.91
NR1H3-228ENST00000525441 NCAPD3P42695 1498 aa33.18■■■□□ 2.9
NR1H3-228ENST00000525441 ATAD2BQ9ULI0 1458 aa33.16■■■□□ 2.9
NR1H3-228ENST00000525441 SMARCA2P51531 1590 aa33.13■■■□□ 2.89
NR1H3-228ENST00000525441 HMGXB3Q12766 1538 aa32.99■■■□□ 2.87
NR1H3-228ENST00000525441 MROH2BQ7Z745 1585 aa32.96■■■□□ 2.87
NR1H3-228ENST00000525441 PEG3Q9GZU2 1588 aa32.94■■■□□ 2.86
NR1H3-228ENST00000525441 BAZ1BQ9UIG0 1483 aaKnown RBP32.89■■■□□ 2.86
NR1H3-228ENST00000525441 WIZO95785 1651 aa32.58■■■□□ 2.81
NR1H3-228ENST00000525441 RSF1Q96T23 1441 aaPredicted RBP32.53■■■□□ 2.8
NR1H3-228ENST00000525441 ERCC6Q03468 1493 aa32.45■■■□□ 2.79
NR1H3-228ENST00000525441 NESP48681 1621 aa32.4■■■□□ 2.78
NR1H3-228ENST00000525441 LAMC3Q9Y6N6 1575 aa32.34■■■□□ 2.77
NR1H3-228ENST00000525441 TOP2AP11388 1531 aaKnown RBP32.27■■■□□ 2.76
NR1H3-228ENST00000525441 CADPSQ9ULU8 1353 aa32.22■■■□□ 2.75
NR1H3-228ENST00000525441 CUX2O14529 1486 aa32.18■■■□□ 2.74
NR1H3-228ENST00000525441 PDS5BQ9NTI5 1447 aa32.17■■■□□ 2.74
NR1H3-228ENST00000525441 KIF21AQ7Z4S6 1674 aa32■■■□□ 2.71
NR1H3-228ENST00000525441 THOC2Q8NI27 1593 aaKnown RBP31.97■■■□□ 2.71
NR1H3-228ENST00000525441 CFTRP13569 1480 aa31.96■■■□□ 2.71
NR1H3-228ENST00000525441 CCDC88BA6NC98 1476 aa31.89■■■□□ 2.7
NR1H3-228ENST00000525441 FANCD2Q9BXW9 1451 aa31.84■■■□□ 2.69
NR1H3-228ENST00000525441 MRC2Q9UBG0 1479 aa31.83■■■□□ 2.69
NR1H3-228ENST00000525441 CEP164Q9UPV0 1460 aa31.83■■■□□ 2.69
NR1H3-228ENST00000525441 WDR62O43379 1518 aa31.7■■■□□ 2.67
NR1H3-228ENST00000525441 PRDM2Q13029 1718 aa31.65■■■□□ 2.66
NR1H3-228ENST00000525441 SUPT5HO00267 1087 aaKnown RBP31.57■■■□□ 2.64
NR1H3-228ENST00000525441 URB2Q14146 1524 aaKnown RBP31.5■■■□□ 2.63
NR1H3-228ENST00000525441 DNAJC5Q9H3Z4 198 aa31.45■■■□□ 2.63
NR1H3-228ENST00000525441 ABCC8Q09428 1581 aa31.33■■■□□ 2.61
NR1H3-228ENST00000525441 TOPBP1Q92547 1522 aa31.29■■■□□ 2.6
NR1H3-228ENST00000525441 DNMBPQ6XZF7 1577 aa31.24■■■□□ 2.59
NR1H3-228ENST00000525441 IFT140Q96RY7 1462 aa31.19■■■□□ 2.58
NR1H3-228ENST00000525441 ZNF608Q9ULD9 1512 aaPredicted RBP31.01■■■□□ 2.55
NR1H3-228ENST00000525441 POLA1P09884 1462 aaPredicted RBP31.01■■■□□ 2.55
NR1H3-228ENST00000525441 CUX1P39880 1505 aa30.95■■■□□ 2.55
NR1H3-228ENST00000525441 TARBP1Q13395 1621 aaKnown RBP30.93■■■□□ 2.54
NR1H3-228ENST00000525441 SOGA1O94964 1423 aa30.9■■■□□ 2.54
NR1H3-228ENST00000525441 FGD5Q6ZNL6 1462 aa30.9■■■□□ 2.54
NR1H3-228ENST00000525441 EIF4G3O43432 1585 aaKnown RBP30.88■■■□□ 2.53
NR1H3-228ENST00000525441 RAD54L2Q9Y4B4 1467 aa30.86■■■□□ 2.53
NR1H3-228ENST00000525441 OSCARQ8IYS5 282 aa30.83■■■□□ 2.53
NR1H3-228ENST00000525441 AQRO60306 1485 aaKnown RBP eCLIP30.82■■■□□ 2.539e-8■■■■□ 21.2
NR1H3-228ENST00000525441 TDRD9Q8NDG6 1382 aaKnown RBP30.74■■■□□ 2.51
NR1H3-228ENST00000525441 WDR97A6NE52 1622 aa30.73■■■□□ 2.51
NR1H3-228ENST00000525441 WRNQ14191 1432 aaPredicted RBP eCLIP30.71■■■□□ 2.51
NR1H3-228ENST00000525441 TOP2BQ02880 1626 aa30.63■■■□□ 2.49
NR1H3-228ENST00000525441 BIVM-ERCC5R4GMW8 1640 aa30.62■■■□□ 2.49
NR1H3-228ENST00000525441 ABCA10Q8WWZ4 1543 aa30.61■■■□□ 2.49
NR1H3-228ENST00000525441 SYNJ1O43426 1573 aa30.58■■■□□ 2.49
NR1H3-228ENST00000525441 GRIN2BQ13224 1484 aa30.57■■■□□ 2.48
NR1H3-228ENST00000525441 FBLN2P98095 1184 aa30.55■■■□□ 2.48
NR1H3-228ENST00000525441 GAPVD1Q14C86 1478 aa30.54■■■□□ 2.48
NR1H3-228ENST00000525441 SNAPC4Q5SXM2 1469 aa30.54■■■□□ 2.48
NR1H3-228ENST00000525441 MAGI1Q96QZ7 1491 aaPredicted RBP30.52■■■□□ 2.48
NR1H3-228ENST00000525441 CHD1O14646 1710 aa30.5■■■□□ 2.47
NR1H3-228ENST00000525441 ABCA5Q8WWZ7 1642 aa30.47■■■□□ 2.47
NR1H3-228ENST00000525441 CHMP7Q8WUX9 453 aaPredicted RBP30.44■■■□□ 2.46
NR1H3-228ENST00000525441 PBRM1Q86U86 1689 aa30.42■■■□□ 2.46
NR1H3-228ENST00000525441 SYNJ2O15056 1496 aa30.39■■■□□ 2.46
NR1H3-228ENST00000525441 TRIM41Q8WV44 630 aa30.33■■■□□ 2.45
NR1H3-228ENST00000525441 RIMBP3CA6NJZ7 1639 aa30.28■■■□□ 2.44
NR1H3-228ENST00000525441 RIMBP3BA6NNM3 1639 aa30.28■■■□□ 2.44
NR1H3-228ENST00000525441 RIMBP3Q9UFD9 1639 aa30.28■■■□□ 2.44
NR1H3-228ENST00000525441 ARHGEF11O15085 1522 aa30.27■■■□□ 2.44
NR1H3-228ENST00000525441 ERICH3Q5RHP9 1530 aa30.24■■■□□ 2.43
NR1H3-228ENST00000525441 ADAMTS12P58397 1594 aa30.2■■■□□ 2.43
NR1H3-228ENST00000525441 CLASP1Q7Z460 1538 aa30.2■■■□□ 2.42
NR1H3-228ENST00000525441 FHAD1B1AJZ9 1412 aa30.2■■■□□ 2.42
NR1H3-228ENST00000525441 GRIN2AQ12879 1464 aa30.16■■■□□ 2.42
NR1H3-228ENST00000525441 KIF27Q86VH2 1401 aa30.11■■■□□ 2.41
NR1H3-228ENST00000525441 CYB5RLQ6IPT4 315 aa30.04■■■□□ 2.4
NR1H3-228ENST00000525441 NUP160Q12769 1436 aa30.04■■■□□ 2.4
NR1H3-228ENST00000525441 ARAP1Q96P48 1450 aa30■■■□□ 2.39
NR1H3-228ENST00000525441 CEP170Q5SW79 1584 aa29.98■■■□□ 2.39
NR1H3-228ENST00000525441 IGF1RP08069 1367 aa29.98■■■□□ 2.39
NR1H3-228ENST00000525441 CUL7Q14999 1698 aa29.91■■■□□ 2.38
NR1H3-228ENST00000525441 CARMIL1Q5VZK9 1371 aa29.82■■■□□ 2.36
NR1H3-228ENST00000525441 SHROOM2Q13796 1616 aa29.8■■■□□ 2.36
NR1H3-228ENST00000525441 JPH4Q96JJ6 628 aa29.76■■■□□ 2.35
NR1H3-228ENST00000525441 RUSC2Q8N2Y8 1516 aa29.76■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms