RNA–Protein interactions for RNA: ENST00000525013.1

CAPN1-203, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-203ENST00000525013 NISCHQ9Y2I1 1504 aa45.66■■■■■ 4.9
CAPN1-203ENST00000525013 CCDC180Q9P1Z9 1646 aa40.78■■■■■ 4.12
CAPN1-203ENST00000525013 ABCC9O60706 1549 aa40.4■■■■■ 4.06
CAPN1-203ENST00000525013 RB1CC1Q8TDY2 1594 aa38.62■■■■□ 3.77
CAPN1-203ENST00000525013 DCAF8L2P0C7V8 631 aa38.51■■■■□ 3.76
CAPN1-203ENST00000525013 NACADO15069 1562 aa38.45■■■■□ 3.75
CAPN1-203ENST00000525013 MYO15BQ96JP2 1530 aa38.01■■■■□ 3.67
CAPN1-203ENST00000525013 ZCCHC6Q5VYS8 1495 aaKnown RBP37.91■■■■□ 3.66
CAPN1-203ENST00000525013 UNC13AQ9UPW8 1703 aa37.78■■■■□ 3.64
CAPN1-203ENST00000525013 PABPN1Q86U42 306 aaKnown RBP eCLIP37.72■■■■□ 3.636e-6■■■□□ 17.1
CAPN1-203ENST00000525013 DCAF1Q9Y4B6 1507 aa37.7■■■■□ 3.63
CAPN1-203ENST00000525013 DNAJC5BQ9UF47 199 aa37.47■■■■□ 3.59
CAPN1-203ENST00000525013 BICRAQ9NZM4 1560 aa37.45■■■■□ 3.59
CAPN1-203ENST00000525013 SCRIBQ14160 1630 aa37.24■■■■□ 3.55
CAPN1-203ENST00000525013 SHROOM4Q9ULL8 1493 aa36.95■■■■□ 3.51
CAPN1-203ENST00000525013 EIF4G1Q04637 1599 aaKnown RBP36.51■■■■□ 3.44
CAPN1-203ENST00000525013 CC2D2AQ9P2K1 1620 aa36.5■■■■□ 3.43
CAPN1-203ENST00000525013 CECR2Q9BXF3 1484 aa36.33■■■■□ 3.41
CAPN1-203ENST00000525013 SMARCA4P51532 1647 aa35.54■■■■□ 3.28
CAPN1-203ENST00000525013 NCAPD3P42695 1498 aa35.47■■■■□ 3.27
CAPN1-203ENST00000525013 ATAD2BQ9ULI0 1458 aa35.44■■■■□ 3.26
CAPN1-203ENST00000525013 BAZ1AQ9NRL2 1556 aaPredicted RBP35.42■■■■□ 3.26
CAPN1-203ENST00000525013 SMARCA2P51531 1590 aa35.38■■■■□ 3.25
CAPN1-203ENST00000525013 HMGXB3Q12766 1538 aa35.25■■■■□ 3.23
CAPN1-203ENST00000525013 MROH2BQ7Z745 1585 aa35.2■■■■□ 3.23
CAPN1-203ENST00000525013 BAZ1BQ9UIG0 1483 aaKnown RBP35.16■■■■□ 3.22
CAPN1-203ENST00000525013 PEG3Q9GZU2 1588 aa35.13■■■■□ 3.21
CAPN1-203ENST00000525013 ERCC6Q03468 1493 aa34.87■■■■□ 3.17
CAPN1-203ENST00000525013 WIZO95785 1651 aa34.82■■■■□ 3.17
CAPN1-203ENST00000525013 NESP48681 1621 aa34.82■■■■□ 3.16
CAPN1-203ENST00000525013 RSF1Q96T23 1441 aaPredicted RBP34.63■■■■□ 3.13
CAPN1-203ENST00000525013 LAMC3Q9Y6N6 1575 aa34.62■■■■□ 3.13
CAPN1-203ENST00000525013 CUX2O14529 1486 aa34.58■■■■□ 3.13
CAPN1-203ENST00000525013 CADPSQ9ULU8 1353 aa34.45■■■■□ 3.11
CAPN1-203ENST00000525013 PDS5BQ9NTI5 1447 aa34.43■■■■□ 3.1
CAPN1-203ENST00000525013 KIF21AQ7Z4S6 1674 aa34.41■■■■□ 3.1
CAPN1-203ENST00000525013 TOP2AP11388 1531 aaKnown RBP34.38■■■■□ 3.09
CAPN1-203ENST00000525013 THOC2Q8NI27 1593 aaKnown RBP34.34■■■■□ 3.09
CAPN1-203ENST00000525013 CFTRP13569 1480 aa34.13■■■■□ 3.05
CAPN1-203ENST00000525013 MRC2Q9UBG0 1479 aa34.09■■■■□ 3.05
CAPN1-203ENST00000525013 DNAJC5Q9H3Z4 198 aa34.09■■■■□ 3.05
CAPN1-203ENST00000525013 FANCD2Q9BXW9 1451 aa34.07■■■■□ 3.04
CAPN1-203ENST00000525013 CEP164Q9UPV0 1460 aa34.07■■■■□ 3.04
CAPN1-203ENST00000525013 CCDC88BA6NC98 1476 aa34.01■■■■□ 3.03
CAPN1-203ENST00000525013 WDR62O43379 1518 aa33.97■■■■□ 3.03
CAPN1-203ENST00000525013 PRDM2Q13029 1718 aa33.87■■■■□ 3.01
CAPN1-203ENST00000525013 URB2Q14146 1524 aaKnown RBP33.74■■■□□ 2.99
CAPN1-203ENST00000525013 SUPT5HO00267 1087 aaKnown RBP33.55■■■□□ 2.96
CAPN1-203ENST00000525013 TOPBP1Q92547 1522 aa33.46■■■□□ 2.95
CAPN1-203ENST00000525013 ABCC8Q09428 1581 aa33.43■■■□□ 2.94
CAPN1-203ENST00000525013 DNMBPQ6XZF7 1577 aa33.38■■■□□ 2.93
CAPN1-203ENST00000525013 IFT140Q96RY7 1462 aa33.35■■■□□ 2.93
CAPN1-203ENST00000525013 ZNF608Q9ULD9 1512 aaPredicted RBP33.27■■■□□ 2.92
CAPN1-203ENST00000525013 OSCARQ8IYS5 282 aa33.15■■■□□ 2.9
CAPN1-203ENST00000525013 POLA1P09884 1462 aaPredicted RBP33.14■■■□□ 2.9
CAPN1-203ENST00000525013 TARBP1Q13395 1621 aaKnown RBP33.12■■■□□ 2.89
CAPN1-203ENST00000525013 EIF4G3O43432 1585 aaKnown RBP33.1■■■□□ 2.89
CAPN1-203ENST00000525013 CUX1P39880 1505 aa33.05■■■□□ 2.88
CAPN1-203ENST00000525013 AQRO60306 1485 aaKnown RBP eCLIP33.05■■■□□ 2.884e-7■■■□□ 15.6
CAPN1-203ENST00000525013 RAD54L2Q9Y4B4 1467 aa33.04■■■□□ 2.88
CAPN1-203ENST00000525013 SOGA1O94964 1423 aa33.03■■■□□ 2.88
CAPN1-203ENST00000525013 FGD5Q6ZNL6 1462 aa33.01■■■□□ 2.88
CAPN1-203ENST00000525013 TDRD9Q8NDG6 1382 aaKnown RBP32.92■■■□□ 2.86
CAPN1-203ENST00000525013 TRIM41Q8WV44 630 aa32.88■■■□□ 2.85
CAPN1-203ENST00000525013 FBLN2P98095 1184 aa32.82■■■□□ 2.84
CAPN1-203ENST00000525013 CHD1O14646 1710 aa32.81■■■□□ 2.84
CAPN1-203ENST00000525013 WDR97A6NE52 1622 aa32.79■■■□□ 2.84
CAPN1-203ENST00000525013 SNAPC4Q5SXM2 1469 aa32.7■■■□□ 2.83
CAPN1-203ENST00000525013 WRNQ14191 1432 aaPredicted RBP eCLIP32.68■■■□□ 2.82
CAPN1-203ENST00000525013 GRIN2BQ13224 1484 aa32.67■■■□□ 2.82
CAPN1-203ENST00000525013 RIMBP3CA6NJZ7 1639 aa32.64■■■□□ 2.82
CAPN1-203ENST00000525013 RIMBP3BA6NNM3 1639 aa32.64■■■□□ 2.82
CAPN1-203ENST00000525013 TOP2BQ02880 1626 aa32.64■■■□□ 2.82
CAPN1-203ENST00000525013 GAPVD1Q14C86 1478 aa32.64■■■□□ 2.82
CAPN1-203ENST00000525013 ABCA10Q8WWZ4 1543 aa32.64■■■□□ 2.82
CAPN1-203ENST00000525013 RIMBP3Q9UFD9 1639 aa32.64■■■□□ 2.82
CAPN1-203ENST00000525013 BIVM-ERCC5R4GMW8 1640 aa32.63■■■□□ 2.81
CAPN1-203ENST00000525013 SYNJ1O43426 1573 aa32.62■■■□□ 2.81
CAPN1-203ENST00000525013 MAGI1Q96QZ7 1491 aaPredicted RBP32.62■■■□□ 2.81
CAPN1-203ENST00000525013 CHMP7Q8WUX9 453 aaPredicted RBP32.61■■■□□ 2.81
CAPN1-203ENST00000525013 PBRM1Q86U86 1689 aa32.6■■■□□ 2.81
CAPN1-203ENST00000525013 ARHGEF11O15085 1522 aa32.56■■■□□ 2.8
CAPN1-203ENST00000525013 ABCA5Q8WWZ7 1642 aa32.55■■■□□ 2.8
CAPN1-203ENST00000525013 SYNJ2O15056 1496 aa32.51■■■□□ 2.79
CAPN1-203ENST00000525013 CLASP1Q7Z460 1538 aa32.37■■■□□ 2.77
CAPN1-203ENST00000525013 CYB5RLQ6IPT4 315 aa32.37■■■□□ 2.77
CAPN1-203ENST00000525013 ADAMTS12P58397 1594 aa32.28■■■□□ 2.76
CAPN1-203ENST00000525013 ARAP1Q96P48 1450 aa32.27■■■□□ 2.76
CAPN1-203ENST00000525013 GRIN2AQ12879 1464 aa32.25■■■□□ 2.75
CAPN1-203ENST00000525013 ERICH3Q5RHP9 1530 aa32.25■■■□□ 2.75
CAPN1-203ENST00000525013 FHAD1B1AJZ9 1412 aa32.22■■■□□ 2.75
CAPN1-203ENST00000525013 CEP170Q5SW79 1584 aa32.11■■■□□ 2.73
CAPN1-203ENST00000525013 NUP160Q12769 1436 aa32.1■■■□□ 2.73
CAPN1-203ENST00000525013 KIF27Q86VH2 1401 aa32.04■■■□□ 2.72
CAPN1-203ENST00000525013 IGF1RP08069 1367 aa31.95■■■□□ 2.71
CAPN1-203ENST00000525013 ERCC6L2Q5T890 1561 aa31.94■■■□□ 2.7
CAPN1-203ENST00000525013 SHROOM2Q13796 1616 aa31.91■■■□□ 2.7
CAPN1-203ENST00000525013 TRHP20396 242 aaPredicted RBP31.9■■■□□ 2.7
CAPN1-203ENST00000525013 CUL7Q14999 1698 aa31.89■■■□□ 2.7
CAPN1-203ENST00000525013 JPH4Q96JJ6 628 aa31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms