RNA–Protein interactions for RNA: ENST00000524334.1

HDAC2-217, Transcript of histone deacetylase 2, humanhuman

TSL 4

Gene HDAC2, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC2-217ENST00000524334 NISCHQ9Y2I1 1504 aa31.11■■■□□ 2.57
HDAC2-217ENST00000524334 CCDC180Q9P1Z9 1646 aa27.6■■■□□ 2.01
HDAC2-217ENST00000524334 ABCC9O60706 1549 aa27.21■■□□□ 1.95
HDAC2-217ENST00000524334 DCAF8L2P0C7V8 631 aa26.17■■□□□ 1.78
HDAC2-217ENST00000524334 RB1CC1Q8TDY2 1594 aa26.12■■□□□ 1.77
HDAC2-217ENST00000524334 NACADO15069 1562 aa26.08■■□□□ 1.77
HDAC2-217ENST00000524334 MYO15BQ96JP2 1530 aa25.93■■□□□ 1.74
HDAC2-217ENST00000524334 ZCCHC6Q5VYS8 1495 aaKnown RBP25.86■■□□□ 1.73
HDAC2-217ENST00000524334 DCAF1Q9Y4B6 1507 aa25.76■■□□□ 1.71
HDAC2-217ENST00000524334 PABPN1Q86U42 306 aaKnown RBP eCLIP25.48■■□□□ 1.67
HDAC2-217ENST00000524334 UNC13AQ9UPW8 1703 aa25.29■■□□□ 1.64
HDAC2-217ENST00000524334 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
HDAC2-217ENST00000524334 SCRIBQ14160 1630 aa25.18■■□□□ 1.62
HDAC2-217ENST00000524334 DNAJC5BQ9UF47 199 aa25.12■■□□□ 1.61
HDAC2-217ENST00000524334 SHROOM4Q9ULL8 1493 aa25.1■■□□□ 1.61
HDAC2-217ENST00000524334 EIF4G1Q04637 1599 aaKnown RBP24.64■■□□□ 1.54
HDAC2-217ENST00000524334 CC2D2AQ9P2K1 1620 aa24.54■■□□□ 1.52
HDAC2-217ENST00000524334 CECR2Q9BXF3 1484 aa24.48■■□□□ 1.51
HDAC2-217ENST00000524334 NCAPD3P42695 1498 aa24.13■■□□□ 1.45
HDAC2-217ENST00000524334 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
HDAC2-217ENST00000524334 SMARCA4P51532 1647 aa24.1■■□□□ 1.45
HDAC2-217ENST00000524334 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.45
HDAC2-217ENST00000524334 SMARCA2P51531 1590 aa24.03■■□□□ 1.44
HDAC2-217ENST00000524334 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
HDAC2-217ENST00000524334 HMGXB3Q12766 1538 aa23.91■■□□□ 1.42
HDAC2-217ENST00000524334 PEG3Q9GZU2 1588 aa23.9■■□□□ 1.42
HDAC2-217ENST00000524334 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
HDAC2-217ENST00000524334 RSF1Q96T23 1441 aaPredicted RBP23.7■■□□□ 1.38
HDAC2-217ENST00000524334 WIZO95785 1651 aa23.61■■□□□ 1.37
HDAC2-217ENST00000524334 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
HDAC2-217ENST00000524334 NESP48681 1621 aa23.48■■□□□ 1.35
HDAC2-217ENST00000524334 CADPSQ9ULU8 1353 aa23.43■■□□□ 1.34
HDAC2-217ENST00000524334 LAMC3Q9Y6N6 1575 aa23.43■■□□□ 1.34
HDAC2-217ENST00000524334 TOP2AP11388 1531 aaKnown RBP23.42■■□□□ 1.34
HDAC2-217ENST00000524334 PDS5BQ9NTI5 1447 aa23.38■■□□□ 1.33
HDAC2-217ENST00000524334 CUX2O14529 1486 aa23.28■■□□□ 1.32
HDAC2-217ENST00000524334 CFTRP13569 1480 aa23.23■■□□□ 1.31
HDAC2-217ENST00000524334 CCDC88BA6NC98 1476 aa23.2■■□□□ 1.3
HDAC2-217ENST00000524334 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
HDAC2-217ENST00000524334 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
HDAC2-217ENST00000524334 CEP164Q9UPV0 1460 aa23.08■■□□□ 1.29
HDAC2-217ENST00000524334 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
HDAC2-217ENST00000524334 THOC2Q8NI27 1593 aaKnown RBP23.07■■□□□ 1.28
HDAC2-217ENST00000524334 MRC2Q9UBG0 1479 aa23.06■■□□□ 1.28
HDAC2-217ENST00000524334 WDR62O43379 1518 aa22.95■■□□□ 1.26
HDAC2-217ENST00000524334 URB2Q14146 1524 aaKnown RBP22.84■■□□□ 1.25
HDAC2-217ENST00000524334 PRDM2Q13029 1718 aa22.79■■□□□ 1.24
HDAC2-217ENST00000524334 ABCC8Q09428 1581 aa22.78■■□□□ 1.24
HDAC2-217ENST00000524334 DNAJC5Q9H3Z4 198 aa22.78■■□□□ 1.24
HDAC2-217ENST00000524334 TOPBP1Q92547 1522 aa22.7■■□□□ 1.22
HDAC2-217ENST00000524334 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
HDAC2-217ENST00000524334 IFT140Q96RY7 1462 aa22.63■■□□□ 1.21
HDAC2-217ENST00000524334 POLA1P09884 1462 aaPredicted RBP22.5■■□□□ 1.19
HDAC2-217ENST00000524334 SOGA1O94964 1423 aa22.48■■□□□ 1.19
HDAC2-217ENST00000524334 ZNF608Q9ULD9 1512 aaPredicted RBP22.48■■□□□ 1.19
HDAC2-217ENST00000524334 CUX1P39880 1505 aa22.47■■□□□ 1.19
HDAC2-217ENST00000524334 FGD5Q6ZNL6 1462 aa22.42■■□□□ 1.18
HDAC2-217ENST00000524334 OSCARQ8IYS5 282 aa22.41■■□□□ 1.18
HDAC2-217ENST00000524334 TARBP1Q13395 1621 aaKnown RBP22.41■■□□□ 1.18
HDAC2-217ENST00000524334 RAD54L2Q9Y4B4 1467 aa22.41■■□□□ 1.18
HDAC2-217ENST00000524334 AQRO60306 1485 aaKnown RBP eCLIP22.39■■□□□ 1.173e-7■■■■■ 30.5
HDAC2-217ENST00000524334 TDRD9Q8NDG6 1382 aaKnown RBP22.36■■□□□ 1.17
HDAC2-217ENST00000524334 WRNQ14191 1432 aaPredicted RBP eCLIP22.35■■□□□ 1.17
HDAC2-217ENST00000524334 EIF4G3O43432 1585 aaKnown RBP22.32■■□□□ 1.16
HDAC2-217ENST00000524334 WDR97A6NE52 1622 aa22.27■■□□□ 1.16
HDAC2-217ENST00000524334 TOP2BQ02880 1626 aa22.24■■□□□ 1.15
HDAC2-217ENST00000524334 ABCA10Q8WWZ4 1543 aa22.22■■□□□ 1.15
HDAC2-217ENST00000524334 FBLN2P98095 1184 aa22.22■■□□□ 1.15
HDAC2-217ENST00000524334 GRIN2BQ13224 1484 aa22.21■■□□□ 1.15
HDAC2-217ENST00000524334 GAPVD1Q14C86 1478 aa22.19■■□□□ 1.14
HDAC2-217ENST00000524334 SYNJ1O43426 1573 aa22.19■■□□□ 1.14
HDAC2-217ENST00000524334 BIVM-ERCC5R4GMW8 1640 aa22.18■■□□□ 1.14
HDAC2-217ENST00000524334 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
HDAC2-217ENST00000524334 SNAPC4Q5SXM2 1469 aa22.14■■□□□ 1.13
HDAC2-217ENST00000524334 MAGI1Q96QZ7 1491 aaPredicted RBP22.14■■□□□ 1.13
HDAC2-217ENST00000524334 SYNJ2O15056 1496 aa22.06■■□□□ 1.12
HDAC2-217ENST00000524334 ABCA5Q8WWZ7 1642 aa22.06■■□□□ 1.12
HDAC2-217ENST00000524334 CHD1O14646 1710 aa21.97■■□□□ 1.11
HDAC2-217ENST00000524334 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
HDAC2-217ENST00000524334 PBRM1Q86U86 1689 aa21.95■■□□□ 1.1
HDAC2-217ENST00000524334 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
HDAC2-217ENST00000524334 FHAD1B1AJZ9 1412 aa21.95■■□□□ 1.1
HDAC2-217ENST00000524334 KIF27Q86VH2 1401 aa21.93■■□□□ 1.1
HDAC2-217ENST00000524334 ARHGEF11O15085 1522 aa21.9■■□□□ 1.1
HDAC2-217ENST00000524334 GRIN2AQ12879 1464 aa21.89■■□□□ 1.09
HDAC2-217ENST00000524334 IGF1RP08069 1367 aa21.87■■□□□ 1.09
HDAC2-217ENST00000524334 ADAMTS12P58397 1594 aa21.86■■□□□ 1.09
HDAC2-217ENST00000524334 CLASP1Q7Z460 1538 aa21.85■■□□□ 1.09
HDAC2-217ENST00000524334 RIMBP3CA6NJZ7 1639 aa21.84■■□□□ 1.09
HDAC2-217ENST00000524334 RIMBP3BA6NNM3 1639 aa21.84■■□□□ 1.09
HDAC2-217ENST00000524334 RIMBP3Q9UFD9 1639 aa21.84■■□□□ 1.09
HDAC2-217ENST00000524334 CYB5RLQ6IPT4 315 aa21.82■■□□□ 1.08
HDAC2-217ENST00000524334 NUP160Q12769 1436 aa21.8■■□□□ 1.08
HDAC2-217ENST00000524334 CARMIL1Q5VZK9 1371 aa21.73■■□□□ 1.07
HDAC2-217ENST00000524334 CEP170Q5SW79 1584 aa21.71■■□□□ 1.07
HDAC2-217ENST00000524334 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
HDAC2-217ENST00000524334 JPH4Q96JJ6 628 aa21.68■■□□□ 1.06
HDAC2-217ENST00000524334 CUL7Q14999 1698 aa21.67■■□□□ 1.06
HDAC2-217ENST00000524334 KIAA0586Q9BVV6 1533 aa21.61■■□□□ 1.05
HDAC2-217ENST00000524334 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms