RNA–Protein interactions for RNA: ENST00000524277.1

SPARC-206, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 2

Gene SPARC, Length 505 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-206ENST00000524277 NISCHQ9Y2I1 1504 aa29.49■■■□□ 2.31
SPARC-206ENST00000524277 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
SPARC-206ENST00000524277 ABCC9O60706 1549 aa26.34■■□□□ 1.81
SPARC-206ENST00000524277 RB1CC1Q8TDY2 1594 aa25.18■■□□□ 1.62
SPARC-206ENST00000524277 NACADO15069 1562 aa25.04■■□□□ 1.6
SPARC-206ENST00000524277 DCAF8L2P0C7V8 631 aa24.88■■□□□ 1.57
SPARC-206ENST00000524277 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
SPARC-206ENST00000524277 DNAJC5BQ9UF47 199 aa24.68■■□□□ 1.54
SPARC-206ENST00000524277 PABPN1Q86U42 306 aaKnown RBP eCLIP24.55■■□□□ 1.52
SPARC-206ENST00000524277 UNC13AQ9UPW8 1703 aa24.44■■□□□ 1.5
SPARC-206ENST00000524277 DCAF1Q9Y4B6 1507 aa24.43■■□□□ 1.5
SPARC-206ENST00000524277 ZCCHC6Q5VYS8 1495 aaKnown RBP24.43■■□□□ 1.5
SPARC-206ENST00000524277 BICRAQ9NZM4 1560 aa24.35■■□□□ 1.49
SPARC-206ENST00000524277 SHROOM4Q9ULL8 1493 aa24.2■■□□□ 1.47
SPARC-206ENST00000524277 SCRIBQ14160 1630 aa24■■□□□ 1.43
SPARC-206ENST00000524277 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
SPARC-206ENST00000524277 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
SPARC-206ENST00000524277 CECR2Q9BXF3 1484 aa23.78■■□□□ 1.4
SPARC-206ENST00000524277 NCAPD3P42695 1498 aa23.12■■□□□ 1.29
SPARC-206ENST00000524277 ATAD2BQ9ULI0 1458 aa23.02■■□□□ 1.28
SPARC-206ENST00000524277 SMARCA2P51531 1590 aa22.98■■□□□ 1.27
SPARC-206ENST00000524277 SMARCA4P51532 1647 aa22.95■■□□□ 1.26
SPARC-206ENST00000524277 HMGXB3Q12766 1538 aa22.92■■□□□ 1.26
SPARC-206ENST00000524277 BAZ1AQ9NRL2 1556 aaPredicted RBP22.91■■□□□ 1.26
SPARC-206ENST00000524277 ERCC6Q03468 1493 aa22.8■■□□□ 1.24
SPARC-206ENST00000524277 CUX2O14529 1486 aa22.79■■□□□ 1.24
SPARC-206ENST00000524277 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
SPARC-206ENST00000524277 PEG3Q9GZU2 1588 aa22.79■■□□□ 1.24
SPARC-206ENST00000524277 DNAJC5Q9H3Z4 198 aa22.74■■□□□ 1.23
SPARC-206ENST00000524277 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
SPARC-206ENST00000524277 NESP48681 1621 aa22.61■■□□□ 1.21
SPARC-206ENST00000524277 LAMC3Q9Y6N6 1575 aa22.56■■□□□ 1.2
SPARC-206ENST00000524277 PDS5BQ9NTI5 1447 aa22.49■■□□□ 1.19
SPARC-206ENST00000524277 CADPSQ9ULU8 1353 aa22.43■■□□□ 1.18
SPARC-206ENST00000524277 THOC2Q8NI27 1593 aaKnown RBP22.38■■□□□ 1.17
SPARC-206ENST00000524277 WIZO95785 1651 aa22.36■■□□□ 1.17
SPARC-206ENST00000524277 KIF21AQ7Z4S6 1674 aa22.3■■□□□ 1.16
SPARC-206ENST00000524277 RSF1Q96T23 1441 aaPredicted RBP22.26■■□□□ 1.15
SPARC-206ENST00000524277 MRC2Q9UBG0 1479 aa22.22■■□□□ 1.15
SPARC-206ENST00000524277 TOP2AP11388 1531 aaKnown RBP22.16■■□□□ 1.14
SPARC-206ENST00000524277 CFTRP13569 1480 aa22.15■■□□□ 1.14
SPARC-206ENST00000524277 WDR62O43379 1518 aa22.15■■□□□ 1.14
SPARC-206ENST00000524277 CEP164Q9UPV0 1460 aa22.15■■□□□ 1.14
SPARC-206ENST00000524277 FANCD2Q9BXW9 1451 aa22.12■■□□□ 1.13
SPARC-206ENST00000524277 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
SPARC-206ENST00000524277 URB2Q14146 1524 aaKnown RBP21.89■■□□□ 1.09
SPARC-206ENST00000524277 PRDM2Q13029 1718 aa21.84■■□□□ 1.09
SPARC-206ENST00000524277 OSCARQ8IYS5 282 aa21.8■■□□□ 1.08
SPARC-206ENST00000524277 ABCC8Q09428 1581 aa21.76■■□□□ 1.07
SPARC-206ENST00000524277 IFT140Q96RY7 1462 aa21.74■■□□□ 1.07
SPARC-206ENST00000524277 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
SPARC-206ENST00000524277 TRIM41Q8WV44 630 aa21.68■■□□□ 1.06
SPARC-206ENST00000524277 DNMBPQ6XZF7 1577 aa21.62■■□□□ 1.05
SPARC-206ENST00000524277 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
SPARC-206ENST00000524277 POLA1P09884 1462 aaPredicted RBP21.47■■□□□ 1.03
SPARC-206ENST00000524277 EIF4G3O43432 1585 aaKnown RBP21.47■■□□□ 1.03
SPARC-206ENST00000524277 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
SPARC-206ENST00000524277 AQRO60306 1485 aaKnown RBP eCLIP21.45■■□□□ 1.02
SPARC-206ENST00000524277 SOGA1O94964 1423 aa21.42■■□□□ 1.02
SPARC-206ENST00000524277 RIMBP3CA6NJZ7 1639 aa21.37■■□□□ 1.01
SPARC-206ENST00000524277 RIMBP3BA6NNM3 1639 aa21.37■■□□□ 1.01
SPARC-206ENST00000524277 RIMBP3Q9UFD9 1639 aa21.37■■□□□ 1.01
SPARC-206ENST00000524277 RAD54L2Q9Y4B4 1467 aa21.36■■□□□ 1.01
SPARC-206ENST00000524277 WDR97A6NE52 1622 aa21.36■■□□□ 1.01
SPARC-206ENST00000524277 FBLN2P98095 1184 aa21.34■■□□□ 1.01
SPARC-206ENST00000524277 ARHGEF11O15085 1522 aa21.34■■□□□ 1.01
SPARC-206ENST00000524277 TDRD9Q8NDG6 1382 aaKnown RBP21.33■■□□□ 1
SPARC-206ENST00000524277 FGD5Q6ZNL6 1462 aa21.32■■□□□ 1
SPARC-206ENST00000524277 SUPT5HO00267 1087 aaKnown RBP21.3■■□□□ 1
SPARC-206ENST00000524277 CUX1P39880 1505 aa21.29■■□□□ 1
SPARC-206ENST00000524277 CHD1O14646 1710 aa21.26■□□□□ 0.99
SPARC-206ENST00000524277 CHMP7Q8WUX9 453 aaPredicted RBP21.24■□□□□ 0.99
SPARC-206ENST00000524277 GRIN2BQ13224 1484 aa21.24■□□□□ 0.99
SPARC-206ENST00000524277 MAGI1Q96QZ7 1491 aaPredicted RBP21.24■□□□□ 0.99
SPARC-206ENST00000524277 SNAPC4Q5SXM2 1469 aa21.22■□□□□ 0.99
SPARC-206ENST00000524277 CYB5RLQ6IPT4 315 aa21.22■□□□□ 0.99
SPARC-206ENST00000524277 SYNJ2O15056 1496 aa21.15■□□□□ 0.98
SPARC-206ENST00000524277 GAPVD1Q14C86 1478 aa21.15■□□□□ 0.98
SPARC-206ENST00000524277 ABCA10Q8WWZ4 1543 aa21.14■□□□□ 0.98
SPARC-206ENST00000524277 SYNJ1O43426 1573 aa21.14■□□□□ 0.97
SPARC-206ENST00000524277 ARAP1Q96P48 1450 aa21.12■□□□□ 0.97
SPARC-206ENST00000524277 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
SPARC-206ENST00000524277 CLASP1Q7Z460 1538 aa21.09■□□□□ 0.97
SPARC-206ENST00000524277 ABCA5Q8WWZ7 1642 aa21.04■□□□□ 0.96
SPARC-206ENST00000524277 PBRM1Q86U86 1689 aa21.03■□□□□ 0.96
SPARC-206ENST00000524277 TOP2BQ02880 1626 aa21■□□□□ 0.95
SPARC-206ENST00000524277 TRHP20396 242 aaPredicted RBP20.99■□□□□ 0.95
SPARC-206ENST00000524277 BIVM-ERCC5R4GMW8 1640 aa20.97■□□□□ 0.95
SPARC-206ENST00000524277 GRIN2AQ12879 1464 aa20.93■□□□□ 0.94
SPARC-206ENST00000524277 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
SPARC-206ENST00000524277 ERICH3Q5RHP9 1530 aa20.88■□□□□ 0.93
SPARC-206ENST00000524277 NUP160Q12769 1436 aa20.87■□□□□ 0.93
SPARC-206ENST00000524277 ADAMTS12P58397 1594 aa20.87■□□□□ 0.93
SPARC-206ENST00000524277 CEP170Q5SW79 1584 aa20.78■□□□□ 0.92
SPARC-206ENST00000524277 SHROOM2Q13796 1616 aa20.73■□□□□ 0.91
SPARC-206ENST00000524277 JPH4Q96JJ6 628 aa20.71■□□□□ 0.91
SPARC-206ENST00000524277 ERCC6L2Q5T890 1561 aa20.69■□□□□ 0.9
SPARC-206ENST00000524277 PRG4Q92954 1404 aaPredicted RBP20.67■□□□□ 0.9
SPARC-206ENST00000524277 KIF27Q86VH2 1401 aa20.66■□□□□ 0.9
SPARC-206ENST00000524277 IGF1RP08069 1367 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms